Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33416 | Sorghum | cytosol | 95.7 | 95.7 |
| TraesCS3A01G305600.1 | Wheat | cytosol | 88.17 | 82.83 |
| TraesCS3B01G330900.1 | Wheat | cytosol | 88.17 | 82.83 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 87.1 | 81.82 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 86.02 | 80.81 |
| TraesCS2B01G143000.1 | Wheat | cytosol | 83.87 | 78.79 |
| TraesCS1B01G110900.1 | Wheat | cytosol | 83.87 | 78.79 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 83.87 | 78.79 |
| TraesCS5B01G340700.1 | Wheat | cytosol | 82.8 | 77.78 |
| HORVU3Hr1G073190.1 | Barley | cytosol | 86.02 | 76.92 |
| TraesCS2B01G427400.1 | Wheat | cytosol | 81.72 | 76.77 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 68.82 | 73.56 |
| CDY02551 | Canola | cytosol | 74.19 | 73.4 |
| Bra018957.1-P | Field mustard | cytosol | 74.19 | 73.4 |
| Bra014318.1-P | Field mustard | cytosol | 74.19 | 73.4 |
| AT1G52245.1 | Thale cress | cytosol | 73.12 | 72.34 |
| Solyc12g044240.1.1 | Tomato | cytosol | 73.12 | 72.34 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 72.04 | 72.04 |
| PGSC0003DMT400019607 | Potato | cytosol | 72.04 | 71.28 |
| Solyc03g120690.2.1 | Tomato | cytosol | 72.04 | 71.28 |
| KRH09878 | Soybean | cytosol | 72.04 | 70.53 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 72.04 | 70.53 |
| PGSC0003DMT400006527 | Potato | cytosol | 70.97 | 70.21 |
| KRH23441 | Soybean | cytosol | 70.97 | 69.47 |
| AT3G16120.1 | Thale cress | cytosol | 68.82 | 68.82 |
| CDY30135 | Canola | cytosol | 68.82 | 68.82 |
| CDX97722 | Canola | cytosol | 68.82 | 68.82 |
| Bra027190.1-P | Field mustard | cytosol | 68.82 | 68.82 |
| KRH60274 | Soybean | cytosol | 67.74 | 67.74 |
| KRH41561 | Soybean | cytosol | 66.67 | 66.67 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 66.67 | 64.58 |
| Zm00001d016016_P001 | Maize | cytosol | 70.97 | 55.0 |
| CDY47528 | Canola | cytosol | 66.67 | 47.69 |
| Zm00001d008330_P001 | Maize | mitochondrion | 38.71 | 29.51 |
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 37.63 | 27.34 |
| Zm00001d017947_P001 | Maize | cytosol, mitochondrion | 38.71 | 23.38 |
| Zm00001d051789_P002 | Maize | cytosol | 37.63 | 22.58 |
| Zm00001d003400_P001 | Maize | cytosol | 38.71 | 20.0 |
| Zm00001d009402_P001 | Maize | cytosol, mitochondrion | 38.71 | 20.0 |
| Zm00001d050905_P001 | Maize | cytosol | 38.71 | 18.56 |
| Zm00001d016977_P002 | Maize | cytosol | 38.71 | 13.58 |
Protein Annotations
| EntrezGene:100284150 | Gene3D:3.30.740.10 | MapMan:35.2 | UniProt:B6TQK4 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 |
| EMBL:EU967269 | GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 | InterPro:IPR037177 | ProteinID:ONM37726.1 | PFAM:PF01221 |
| PANTHER:PTHR11886 | PANTHER:PTHR11886:SF47 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI000182E0C5 | EnsemblPlantsGene:Zm00001d043386 |
| EnsemblPlants:Zm00001d043386_P001 | EnsemblPlants:Zm00001d043386_T001 | SEG:seg | : | : | : |
Description
Dynein light chain LC6%2C flagellar outer arm
Coordinates
chr3:-:198369839..198370639
Molecular Weight (calculated)
10190.3 Da
IEP (calculated)
8.075
GRAVY (calculated)
0.087
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGKAVVED TDMPAKMQAQ AMSAASRALD RFDVLDCRSI ASHIKKEFDA IHGPGWQCVV GSGFGCYITH SKGSFIYFRL ESLRFLVFKG AAA
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.