CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93395
KRG93626
KRG95278
KRG95926
KRH04949
KRH18405
KRH18591
KRH33097
KRH44616
KRH52604
KRH61944
KRH66963
KRH67641
KRH71974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	KRH04949	AT2G24550.1	21798944
AT3G16120.1	KRH52604	AT2G24550.1	21798944
AT3G16120.1	KRH61944	AT2G24550.1	21798944
AT3G16120.1	KRH44616	AT3G21175.1	21798944
AT3G16120.1	KRG93626	AT3G29320.1	21798944
AT3G16120.1	KRH18405	AT3G29320.1	21798944
AT3G16120.1	KRG95926	AT3G53320.1	21798944
AT3G16120.1	KRH67641	AT3G53320.1	21798944
AT3G16120.1	KRG95278	AT3G57540.1	21798944
AT3G16120.1	KRH33097	AT3G57540.1	21798944
AT3G16120.1	KRH66963	AT3G57540.1	21798944
AT3G16120.1	KRH71974	AT3G57540.1	21798944
AT3G16120.1	KRG93395	AT5G14910.1	21798944
AT3G16120.1	KRH18591	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09878	Soybean	cytosol	98.95	98.95
Solyc12g044240.1.1	Tomato	cytosol	83.16	84.04
PGSC0003DMT400019607	Potato	cytosol	82.11	82.98
VIT_09s0002g04280.t01	Wine grape	cytosol	81.05	81.05
Solyc03g120690.2.1	Tomato	cytosol	80.0	80.85
PGSC0003DMT400006527	Potato	cytosol	78.95	79.79
AT1G52245.1	Thale cress	cytosol	78.95	79.79
GSMUA_Achr2P19900_001	Banana	cytosol	76.84	78.49
Bra018957.1-P	Field mustard	cytosol	76.84	77.66
KRH60274	Soybean	cytosol	75.79	77.42
Bra014318.1-P	Field mustard	cytosol	75.79	76.6
CDY02551	Canola	cytosol	75.79	76.6
AT3G16120.1	Thale cress	cytosol	74.74	76.34
KRH41561	Soybean	cytosol	74.74	76.34
GSMUA_Achr7P25190_001	Banana	cytosol	74.74	76.34
GSMUA_Achr10P...	Banana	cytosol	73.68	75.27
CDY30135	Canola	cytosol	73.68	75.27
KXG33416	Sorghum	cytosol	73.68	75.27
CDX97722	Canola	cytosol	73.68	75.27
Bra027190.1-P	Field mustard	cytosol	73.68	75.27
GSMUA_Achr10P...	Banana	cytosol	76.84	71.57
Zm00001d043386_P001	Maize	cytosol	69.47	70.97
GSMUA_Achr7P14400_001	Banana	cytosol	69.47	70.97
TraesCS3D01G296300.1	Wheat	cytosol	70.53	67.68
TraesCS3B01G330900.1	Wheat	cytosol	69.47	66.67
TraesCS3A01G305600.1	Wheat	cytosol	69.47	66.67
TraesCS1D01G203800.1	Wheat	cytosol	68.42	65.66
HORVU3Hr1G073190.1	Barley	cytosol	70.53	64.42
TraesCS2B01G143000.1	Wheat	cytosol	66.32	63.64
TraesCS2A01G245600.1	Wheat	cytosol	66.32	63.64
TraesCS1B01G110900.1	Wheat	cytosol	65.26	62.63
TraesCS7A01G061500.1	Wheat	cytosol	68.42	61.9
TraesCS4A01G427300.1	Wheat	cytosol	68.42	61.9
TraesCS2B01G427400.1	Wheat	cytosol	64.21	61.62
TraesCS5B01G340700.1	Wheat	cytosol	64.21	61.62
EES06648	Sorghum	cytosol	64.21	61.62
Os02t0269200-01	Rice	cytosol	64.21	61.62
TraesCS7D01G056400.1	Wheat	cytosol	67.37	60.95
TraesCS7A01G284100.1	Wheat	cytosol, plastid	52.63	57.47
KRH25852	Soybean	cytosol	34.74	55.93
KRH27167	Soybean	cytosol	51.58	52.13
Zm00001d016016_P001	Maize	cytosol	63.16	50.0
CDY47528	Canola	cytosol	68.42	50.0
KRH40947	Soybean	cytosol	26.32	49.02
TraesCS4A01G428300.1	Wheat	cytosol	67.37	47.76
KRH55664	Soybean	cytosol, mitochondrion, peroxisome	52.63	45.87
KRH49195	Soybean	cytosol	50.53	42.86
HORVU7Hr1G011400.2	Barley	plastid	66.32	38.89
KRH37076	Soybean	cytosol	36.84	29.66
KRH41675	Soybean	cytosol	40.0	28.57
KRH12076	Soybean	cytosol	35.79	27.87
KRH60372	Soybean	cytosol	38.95	27.82
KRH08469	Soybean	cytosol	36.84	26.92
KRH70126	Soybean	cytosol	36.84	26.32
KRH12077	Soybean	cytosol	36.84	25.18
KRH27230	Soybean	cytosol	38.95	24.34
KRH22104	Soybean	cytosol, plastid	36.84	22.29
KRH37077	Soybean	mitochondrion	35.79	21.66
KRH33092	Soybean	plastid	28.42	18.12
KRH03712	Soybean	cytosol	45.26	17.55
KRH20287	Soybean	cytosol	44.21	17.21
KRH03396	Soybean	cytosol	41.05	15.06
KRH56986	Soybean	cytosol	41.05	14.77
KRH40946	Soybean	plastid	15.79	12.93

Protein Annotations

EntrezGene:100808818	Gene3D:3.30.740.10	MapMan:35.2	EMBL:ACUP02008465	EMBL:BT096396	UniProt:C6TFK8
InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	EnsemblPlantsGene:GLYMA_13G357500	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005868	GO:GO:0005874	GO:GO:0006810	GO:GO:0007017	GO:GO:0008092
GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970	GO:GO:0016043	GO:GO:0016787
GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177
EnsemblPlants:KRH23441	ProteinID:KRH23441	ProteinID:KRH23441.1	PFAM:PF01221	PANTHER:PTHR11886	PANTHER:PTHR11886:SF47
SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI0001B166D0	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:44533408..44534468

Molecular Weight (calculated)

10649.7 Da

IEP (calculated)

4.485

GRAVY (calculated)

0.182

Length

95 amino acids

Sequence
(BLAST)

1: MLEGKAVIED TDMPDKMQIQ AMASAYEALD LYDVFDCTSI AAHIKKEFDT KYGSGWQCVV GSSFGCFFTH SKGTFVYFTL ETLNFLIFKG ASYLI

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.