Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61944 | Soybean | nucleus | 84.13 | 83.46 |
| Bra020475.1-P | Field mustard | nucleus | 33.33 | 38.89 |
| Bra036527.1-P | Field mustard | nucleus | 35.32 | 38.86 |
| CDX87106 | Canola | nucleus | 35.32 | 38.7 |
| CDY05462 | Canola | nucleus | 32.94 | 38.6 |
| CDY05394 | Canola | nucleus | 33.33 | 38.36 |
| Bra009802.1-P | Field mustard | nucleus | 34.13 | 37.89 |
| CDX88142 | Canola | nucleus | 34.13 | 37.89 |
| CDY19822 | Canola | nucleus | 34.52 | 37.66 |
| CDY55465 | Canola | nucleus | 34.92 | 37.61 |
| AT4G31510.1 | Thale cress | nucleus | 30.56 | 35.98 |
| AT5G24890.1 | Thale cress | nucleus | 33.33 | 35.0 |
| CDY68667 | Canola | cytosol | 20.24 | 34.0 |
| AT2G24550.1 | Thale cress | nucleus | 32.94 | 33.88 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 23.02 | 33.72 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 29.76 | 33.33 |
| KRH04949 | Soybean | extracellular, vacuole | 42.06 | 33.02 |
| Solyc08g068970.2.1 | Tomato | nucleus | 23.02 | 32.77 |
| CDX72307 | Canola | nucleus | 27.78 | 32.71 |
| Bra024004.1-P | Field mustard | nucleus | 27.78 | 32.56 |
| CDY45582 | Canola | nucleus | 32.54 | 32.54 |
| CDY13436 | Canola | nucleus | 26.98 | 31.78 |
| Bra007841.1-P | Field mustard | nucleus | 30.56 | 31.56 |
| Bra032085.1-P | Field mustard | nucleus | 32.14 | 31.4 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 30.56 | 31.17 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 30.56 | 31.17 |
| CDX76805 | Canola | nucleus | 30.16 | 31.15 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 30.95 | 31.08 |
| Zm00001d014648_P001 | Maize | nucleus | 22.22 | 30.77 |
| Bra031516.1-P | Field mustard | nucleus | 25.0 | 30.73 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 28.17 | 30.47 |
| CDY36435 | Canola | nucleus | 26.19 | 30.0 |
| CDY23302 | Canola | nucleus | 26.19 | 30.0 |
| Bra010233.1-P | Field mustard | nucleus | 26.19 | 30.0 |
| EER99130 | Sorghum | nucleus | 30.16 | 29.57 |
| PGSC0003DMT400086234 | Potato | nucleus | 20.63 | 29.55 |
| CDY20324 | Canola | nucleus | 29.76 | 29.07 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 25.4 | 28.96 |
| Zm00001d021006_P001 | Maize | nucleus | 29.37 | 28.68 |
| Os09t0499000-01 | Rice | nucleus | 28.57 | 27.8 |
| Zm00001d006059_P001 | Maize | nucleus | 28.57 | 27.48 |
| Zm00001d049768_P001 | Maize | nucleus | 27.78 | 26.92 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 26.98 | 26.05 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 28.17 | 25.91 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 23.02 | 25.89 |
| Zm00001d036499_P001 | Maize | nucleus | 22.22 | 25.81 |
| KXG25581 | Sorghum | nucleus | 28.17 | 25.54 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 27.78 | 25.27 |
| Zm00001d031545_P001 | Maize | nucleus | 26.98 | 25.0 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 22.22 | 24.78 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 26.98 | 24.73 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 22.22 | 24.67 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 26.98 | 24.64 |
| EER88891 | Sorghum | nucleus | 21.03 | 24.09 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 30.16 | 23.1 |
| Os06t0698748-02 | Rice | nucleus | 20.24 | 22.37 |
Protein Annotations
| EMBL:ACUP02003424 | EnsemblPlants:KRH52604 | EnsemblPlantsGene:GLYMA_06G077200 | EntrezGene:100776044 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 |
| ProteinID:KRH52604 | ProteinID:KRH52604.1 | SEG:seg | UniParc:UPI000233A5D4 | UniProt:I1K947 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr6:-:5962956..5964561
Molecular Weight (calculated)
28195.0 Da
IEP (calculated)
4.324
GRAVY (calculated)
-1.017
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLVGPAFT IDVPSSPPRD GGSENRIFLN GSPEKDDGSN FRISGPPKFF AGGESESSSS IGTPDDSDNE EEEVQSQLKI RTGLGSLDAM EDSLPIKRGL
101: SGHFDGKSKS FSDLSQVSNL SNLKELQKQE SPFNKRRRVL IASKWSRRSS FYSWSNPQSM PLLPVDEDQD YDYEEEEEDE EENARKVPSA SSSSSSSLAE
201: EKKQEDQVQL RFNRMPESYA AHMRLRLGSF KARSFSLADL QEHDDEEEGD DH
101: SGHFDGKSKS FSDLSQVSNL SNLKELQKQE SPFNKRRRVL IASKWSRRSS FYSWSNPQSM PLLPVDEDQD YDYEEEEEDE EENARKVPSA SSSSSSSLAE
201: EKKQEDQVQL RFNRMPESYA AHMRLRLGSF KARSFSLADL QEHDDEEEGD DH
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.