Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05462 | Canola | nucleus | 88.58 | 90.23 |
| CDX88142 | Canola | nucleus | 72.6 | 70.04 |
| CDY55465 | Canola | nucleus | 73.52 | 68.8 |
| CDX87106 | Canola | nucleus | 68.04 | 64.78 |
| CDY19822 | Canola | nucleus | 68.04 | 64.5 |
| AT5G24890.1 | Thale cress | nucleus | 62.56 | 57.08 |
| CDY20324 | Canola | nucleus | 41.1 | 34.88 |
| CDY45582 | Canola | nucleus | 39.73 | 34.52 |
| CDX72307 | Canola | nucleus | 32.88 | 33.64 |
| KRH61944 | Soybean | nucleus | 38.81 | 33.46 |
| CDY68667 | Canola | cytosol | 22.83 | 33.33 |
| KRH52604 | Soybean | nucleus | 38.36 | 33.33 |
| CDX76805 | Canola | nucleus | 36.99 | 33.2 |
| CDY13436 | Canola | nucleus | 31.96 | 32.71 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 25.11 | 31.98 |
| CDY36435 | Canola | nucleus | 31.51 | 31.36 |
| CDY23302 | Canola | nucleus | 30.59 | 30.45 |
| Solyc08g068970.2.1 | Tomato | nucleus | 24.2 | 29.94 |
| PGSC0003DMT400086234 | Potato | nucleus | 23.29 | 28.98 |
| KRH04949 | Soybean | extracellular, vacuole | 41.55 | 28.35 |
| Zm00001d014648_P001 | Maize | nucleus | 23.29 | 28.02 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 26.48 | 26.24 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 27.4 | 25.75 |
| EER88891 | Sorghum | nucleus | 25.11 | 25.0 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 25.57 | 24.89 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 26.94 | 23.89 |
| KXG25581 | Sorghum | nucleus | 30.14 | 23.74 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 29.68 | 23.64 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 26.94 | 23.51 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 26.48 | 23.48 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 29.68 | 23.47 |
| Zm00001d021006_P001 | Maize | nucleus | 27.4 | 23.26 |
| Zm00001d036499_P001 | Maize | nucleus | 22.83 | 23.04 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 27.4 | 22.99 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 28.77 | 22.83 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 23.29 | 22.77 |
| Zm00001d049768_P001 | Maize | nucleus | 26.94 | 22.69 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 23.29 | 22.57 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 23.29 | 22.47 |
| Zm00001d031545_P001 | Maize | nucleus | 27.85 | 22.43 |
| EER99130 | Sorghum | nucleus | 26.03 | 22.18 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 26.94 | 21.53 |
| Zm00001d006059_P001 | Maize | nucleus | 25.11 | 20.99 |
| Os09t0499000-01 | Rice | nucleus | 24.66 | 20.85 |
| Os06t0698748-02 | Rice | nucleus | 19.63 | 18.86 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 27.85 | 18.54 |
Protein Annotations
| EnsemblPlants:CDY05394 | EnsemblPlantsGene:GSBRNA2T00120287001 | ncoils:Coil | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDY05394 |
| ProteinID:CDY05394.1 | SEG:seg | UniParc:UPI0004EE362B | MapMan:35.2 | : | : |
Description
BnaC02g41020D
Coordinates
chrLK031961:+:908171..909366
Molecular Weight (calculated)
23914.9 Da
IEP (calculated)
4.125
GRAVY (calculated)
-1.041
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGPTFSI ELSEHGSDLP TTEKASSFSS SGDMTNEEGA GLSRVGSGIW SGRTVDYSSE SSSSIGTPGD SEEDEESEED NDEELGLASM RSLEDSLPSK
101: GLSSHYKGKS KSFGNLGEIG SVKEVPKQEN PLNKKRRLQI YNKLARKSFY SWQNPKSMPL LPVHEDNDDE EGDDGDLSDE ERGGDVLARR PSFKNRALKS
201: MSCFALSDLQ EEEEEEEDE
101: GLSSHYKGKS KSFGNLGEIG SVKEVPKQEN PLNKKRRLQI YNKLARKSFY SWQNPKSMPL LPVHEDNDDE EGDDGDLSDE ERGGDVLARR PSFKNRALKS
201: MSCFALSDLQ EEEEEEEDE
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.