Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007841.1-P | Field mustard | nucleus | 95.9 | 95.9 |
| CDY68667 | Canola | cytosol | 58.61 | 95.33 |
| CDY45582 | Canola | nucleus | 72.54 | 70.24 |
| CDY20324 | Canola | nucleus | 70.9 | 67.05 |
| AT2G24550.1 | Thale cress | nucleus | 66.39 | 66.12 |
| CDY23302 | Canola | nucleus | 44.26 | 49.09 |
| CDY36435 | Canola | nucleus | 43.03 | 47.73 |
| CDX72307 | Canola | nucleus | 40.98 | 46.73 |
| CDY13436 | Canola | nucleus | 36.48 | 41.59 |
| CDY19822 | Canola | nucleus | 38.52 | 40.69 |
| CDY05462 | Canola | nucleus | 35.25 | 40.0 |
| CDX87106 | Canola | nucleus | 37.7 | 40.0 |
| CDX88142 | Canola | nucleus | 36.07 | 38.77 |
| CDY55465 | Canola | nucleus | 36.07 | 37.61 |
| CDY05394 | Canola | nucleus | 33.2 | 36.99 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 22.95 | 32.56 |
| KRH61944 | Soybean | nucleus | 31.97 | 30.71 |
| KRH52604 | Soybean | nucleus | 31.15 | 30.16 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 28.28 | 29.61 |
| EER88891 | Sorghum | nucleus | 26.23 | 29.09 |
| Solyc08g068970.2.1 | Tomato | nucleus | 20.9 | 28.81 |
| Zm00001d014648_P001 | Maize | nucleus | 20.9 | 28.02 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 25.0 | 27.6 |
| PGSC0003DMT400086234 | Potato | nucleus | 19.67 | 27.27 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 25.0 | 27.11 |
| Zm00001d036499_P001 | Maize | nucleus | 23.36 | 26.27 |
| Os06t0698748-02 | Rice | nucleus | 24.18 | 25.88 |
| EER99130 | Sorghum | nucleus | 27.05 | 25.68 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 23.36 | 25.22 |
| Zm00001d021006_P001 | Maize | nucleus | 26.64 | 25.19 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 26.64 | 24.9 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 25.0 | 24.7 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 25.0 | 24.7 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 22.54 | 24.55 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 22.54 | 24.23 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 24.59 | 23.9 |
| Os09t0499000-01 | Rice | nucleus | 25.0 | 23.55 |
| KRH04949 | Soybean | extracellular, vacuole | 30.74 | 23.36 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 25.82 | 22.83 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 25.41 | 22.63 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 25.41 | 22.55 |
| Zm00001d006059_P001 | Maize | nucleus | 24.18 | 22.52 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 25.41 | 22.38 |
| KXG25581 | Sorghum | nucleus | 24.59 | 21.58 |
| Zm00001d049768_P001 | Maize | nucleus | 22.54 | 21.15 |
| Zm00001d031545_P001 | Maize | nucleus | 23.36 | 20.96 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 23.77 | 17.63 |
Protein Annotations
| EnsemblPlants:CDX76805 | EnsemblPlantsGene:GSBRNA2T00127306001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDX76805 | ProteinID:CDX76805.1 |
| SEG:seg | UniParc:UPI0004EF33A3 | MapMan:35.2 | : | : | : |
Description
BnaC08g33910D
Coordinates
chrLK031808:+:1192933..1193955
Molecular Weight (calculated)
26298.5 Da
IEP (calculated)
4.385
GRAVY (calculated)
-0.614
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVMVGSSFG IGTAACVRDR GGVSAQDKAV PPPALLMADE SGRGGGSQIG LASRIELSMS NKSAEESSED SSSSIGEISD NEEEDEDDAV SSQGEGGALV
101: SFSSSLEDSL PIKRGLSNHY VGKSKSFGNL MESSNIKAKD LEKVENPFNK KRRLIIANKL RSRGRSMSVS SFYTWQNPNS TPLLALQEPN KLDADGDIQT
201: ISLFERRKMM MKSKQDLMAQ TQSCFCLSSL QEEDDDGGSC DDNE
101: SFSSSLEDSL PIKRGLSNHY VGKSKSFGNL MESSNIKAKD LEKVENPFNK KRRLIIANKL RSRGRSMSVS SFYTWQNPNS TPLLALQEPN KLDADGDIQT
201: ISLFERRKMM MKSKQDLMAQ TQSCFCLSSL QEEDDDGGSC DDNE
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.