Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 90.58 | 90.91 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 90.94 | 90.61 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 82.25 | 82.85 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 58.7 | 62.07 |
| KXG25581 | Sorghum | nucleus | 55.43 | 55.04 |
| Zm00001d049768_P001 | Maize | nucleus | 51.09 | 54.23 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 48.19 | 52.99 |
| Zm00001d031545_P001 | Maize | nucleus | 51.45 | 52.21 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 37.68 | 46.22 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 38.04 | 45.06 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 35.14 | 43.89 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 27.54 | 33.48 |
| CDY68667 | Canola | cytosol | 18.12 | 33.33 |
| Bra020475.1-P | Field mustard | nucleus | 23.91 | 30.56 |
| CDY05462 | Canola | nucleus | 23.55 | 30.23 |
| Bra024004.1-P | Field mustard | nucleus | 23.19 | 29.77 |
| AT4G31510.1 | Thale cress | nucleus | 22.83 | 29.44 |
| CDY13436 | Canola | nucleus | 22.83 | 29.44 |
| CDX72307 | Canola | nucleus | 22.83 | 29.44 |
| CDY19822 | Canola | nucleus | 24.64 | 29.44 |
| Solyc08g068970.2.1 | Tomato | nucleus | 18.84 | 29.38 |
| CDX87106 | Canola | nucleus | 24.28 | 29.13 |
| Bra009802.1-P | Field mustard | nucleus | 23.91 | 29.07 |
| CDX88142 | Canola | nucleus | 23.91 | 29.07 |
| CDY05394 | Canola | nucleus | 22.83 | 28.77 |
| CDY23302 | Canola | nucleus | 22.83 | 28.64 |
| Bra010233.1-P | Field mustard | nucleus | 22.83 | 28.64 |
| CDY55465 | Canola | nucleus | 24.28 | 28.63 |
| AT2G24550.1 | Thale cress | nucleus | 25.36 | 28.57 |
| PGSC0003DMT400086234 | Potato | nucleus | 18.12 | 28.41 |
| Bra036527.1-P | Field mustard | nucleus | 23.55 | 28.38 |
| Bra031516.1-P | Field mustard | nucleus | 21.01 | 28.29 |
| CDY45582 | Canola | nucleus | 25.72 | 28.17 |
| CDY36435 | Canola | nucleus | 22.1 | 27.73 |
| Bra032085.1-P | Field mustard | nucleus | 25.72 | 27.52 |
| AT5G24890.1 | Thale cress | nucleus | 23.91 | 27.5 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 17.03 | 27.33 |
| KRH52604 | Soybean | nucleus | 24.64 | 26.98 |
| CDY20324 | Canola | nucleus | 25.0 | 26.74 |
| Bra007841.1-P | Field mustard | nucleus | 23.55 | 26.64 |
| KRH61944 | Soybean | nucleus | 24.28 | 26.38 |
| CDX76805 | Canola | nucleus | 22.83 | 25.82 |
| KRH04949 | Soybean | extracellular, vacuole | 23.55 | 20.25 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G254500.1 | EnsemblPlantsGene:TraesCS7A01G254500 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF4 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7A:-:240956333..240957681
Molecular Weight (calculated)
29613.4 Da
IEP (calculated)
4.338
GRAVY (calculated)
-0.918
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTALAPGMA RGHGFRGAGK GKQRSDSEEP ETNRGGGPNG FYVEEEGEEV GREELRELEE ALSDASSIGA ASSDSSSIGE DSTSEKEEGE EEEVESEAPV
101: DEVLAMGLGT LESLEDALPS KRGLSNFYAG KSKSFTSLAE AAAKAAAKEI AKPENPFNKR RRVLAAWSRR RASCSSLVTT YLPPLLSLDH TVVEGDEEEE
201: EEEEEERSDD GDDEGNSSGN GRREKAPASP RFPPRSLHSA SQKASVMSRN TINPSTSSFR SPRSFSLSDL QNAGYN
101: DEVLAMGLGT LESLEDALPS KRGLSNFYAG KSKSFTSLAE AAAKAAAKEI AKPENPFNKR RRVLAAWSRR RASCSSLVTT YLPPLLSLDH TVVEGDEEEE
201: EEEEEERSDD GDDEGNSSGN GRREKAPASP RFPPRSLHSA SQKASVMSRN TINPSTSSFR SPRSFSLSDL QNAGYN
001: MELMAKPTFS IEVSQYGTTD LPATEKASSS SSSFETTNEE GVEESGLSRI WSGQTADYSS DSSSIGTPGD SEEDEEESEN ENDDVSSKEL GLRGLASMSS
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
101: LEDSLPSKRG LSNHYKGKSK SFGNLGEIGS VKEVAKQENP LNKRRRLQIC NKLARKSFYS WQNPKSMPLL PVNEDEDDDD EDDDEEDLKS GFDENKSSSD
201: EEGVKKVVVR KGSFKNRAYK SRSCFALSDL IEEEDDDDDQ
Arabidopsis Description
At5g24890 [Source:UniProtKB/TrEMBL;Acc:Q8L9W8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.