Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P05640_001 | Banana | nucleus | 55.11 | 53.22 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 45.78 | 46.61 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 48.0 | 41.38 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 43.56 | 39.68 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 43.11 | 39.27 |
| EER99130 | Sorghum | nucleus | 44.44 | 38.91 |
| Os09t0499000-01 | Rice | nucleus | 44.44 | 38.61 |
| Zm00001d031545_P001 | Maize | nucleus | 46.67 | 38.6 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 42.67 | 38.25 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 46.67 | 38.18 |
| KXG25581 | Sorghum | nucleus | 47.11 | 38.13 |
| Zm00001d021006_P001 | Maize | nucleus | 43.56 | 37.98 |
| Zm00001d049768_P001 | Maize | nucleus | 43.56 | 37.69 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 46.22 | 37.68 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 45.78 | 37.59 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 46.22 | 37.55 |
| Zm00001d006059_P001 | Maize | nucleus | 40.89 | 35.11 |
| Solyc08g068970.2.1 | Tomato | nucleus | 26.22 | 33.33 |
| CDY68667 | Canola | cytosol | 21.33 | 32.0 |
| PGSC0003DMT400086234 | Potato | nucleus | 24.89 | 31.82 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 31.11 | 31.25 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 31.11 | 30.97 |
| EER88891 | Sorghum | nucleus | 30.22 | 30.91 |
| Zm00001d014648_P001 | Maize | nucleus | 24.89 | 30.77 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 23.11 | 30.23 |
| KRH52604 | Soybean | nucleus | 33.33 | 29.76 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 29.78 | 29.52 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 42.67 | 29.18 |
| KRH61944 | Soybean | nucleus | 32.44 | 28.74 |
| Bra009802.1-P | Field mustard | nucleus | 28.89 | 28.63 |
| CDX88142 | Canola | nucleus | 28.89 | 28.63 |
| AT4G31510.1 | Thale cress | nucleus | 27.11 | 28.5 |
| CDX87106 | Canola | nucleus | 28.89 | 28.26 |
| CDY19822 | Canola | nucleus | 28.89 | 28.14 |
| Bra036527.1-P | Field mustard | nucleus | 28.44 | 27.95 |
| AT5G24890.1 | Thale cress | nucleus | 28.89 | 27.08 |
| CDY55465 | Canola | nucleus | 28.0 | 26.92 |
| Bra020475.1-P | Field mustard | nucleus | 25.78 | 26.85 |
| Os06t0698748-02 | Rice | nucleus | 27.11 | 26.75 |
| CDY45582 | Canola | nucleus | 29.78 | 26.59 |
| CDY05462 | Canola | nucleus | 25.33 | 26.51 |
| AT2G24550.1 | Thale cress | nucleus | 28.44 | 26.12 |
| Zm00001d036499_P001 | Maize | nucleus | 24.89 | 25.81 |
| CDY05394 | Canola | nucleus | 24.89 | 25.57 |
| Bra007841.1-P | Field mustard | nucleus | 27.56 | 25.41 |
| CDX72307 | Canola | nucleus | 24.0 | 25.23 |
| Bra032085.1-P | Field mustard | nucleus | 28.89 | 25.19 |
| Bra024004.1-P | Field mustard | nucleus | 24.0 | 25.12 |
| CDX76805 | Canola | nucleus | 27.11 | 25.0 |
| Bra031516.1-P | Field mustard | nucleus | 22.67 | 24.88 |
| CDY13436 | Canola | nucleus | 23.56 | 24.77 |
| Bra010233.1-P | Field mustard | nucleus | 24.0 | 24.55 |
| CDY36435 | Canola | nucleus | 24.0 | 24.55 |
| CDY23302 | Canola | nucleus | 24.0 | 24.55 |
| CDY20324 | Canola | nucleus | 28.0 | 24.42 |
| KRH04949 | Soybean | extracellular, vacuole | 32.0 | 22.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P13850_001 | EnsemblPlants:GSMUA_Achr9T13850_001 | EnsemblPlantsGene:GSMUA_Achr9G13850_001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | SEG:seg |
| UniParc:UPI000294CB05 | UniProt:M0U043 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G13850_001]
Coordinates
chr9:+:8981252..8982277
Molecular Weight (calculated)
24554.3 Da
IEP (calculated)
5.447
GRAVY (calculated)
-0.920
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLLLSNVL RYHRGEQQEK VEEEGKAVGK SNGFRLGSRE EADASSDSSS IGAASTLSSD RNGSDHGGEE DEEEVESKRK DGALGSLDSL EDSLPIKRGL
101: SNFFSGKSKS FASLSDVVNA STNDIVKPEN PFNKRRRVLM MSKMRRASCS SLVCPPLPPL SAPAHTVAEA EEDEEEEEDE EKEKHGGRSP PSMGPFPRHG
201: NSSSMRRNKA FRSPRSFSLS DLQHV
101: SNFFSGKSKS FASLSDVVNA STNDIVKPEN PFNKRRRVLM MSKMRRASCS SLVCPPLPPL SAPAHTVAEA EEDEEEEEDE EKEKHGGRSP PSMGPFPRHG
201: NSSSMRRNKA FRSPRSFSLS DLQHV
001: MEVLVGSTFR DRSSVTTHDQ AVPASLSSRI GLRRCGRSPP PESSSSVGET SENEEDEDDA VSSSQGRWLN SFSSSLEDSL PIKRGLSNHY IGKSKSFGNL
101: MEASNTNDLV KVESPLNKRR RLLIANKLRR RSSLSSFSIY TKINPNSMPL LALQESDNED HKLNDDDDDD DSSSDDETSK LKEKRMKMTN HRDFMVPQTK
201: SCFSLTSFQD DDDR
101: MEASNTNDLV KVESPLNKRR RLLIANKLRR RSSLSSFSIY TKINPNSMPL LALQESDNED HKLNDDDDDD DSSSDDETSK LKEKRMKMTN HRDFMVPQTK
201: SCFSLTSFQD DDDR
Arabidopsis Description
Major centromere autoantigen B-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SV19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.