Factsheet for HORVU5Hr1G075200.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 2
mitochondrion 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
TargetP:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G051660.10
HORVU3Hr1G095080.3
HORVU3Hr1G095090.1
HORVU3Hr1G095200.4
HORVU3Hr1G095240.2
HORVU4Hr1G085370.1
HORVU4Hr1G085450.1
HORVU6Hr1G002270.1
HORVU6Hr1G002330.14
HORVU6Hr1G075650.1
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2
HORVU7Hr1G038130.1
HORVU7Hr1G054320.2
HORVU7Hr1G054390.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24550.1	HORVU1Hr1G051660.10	AT2G45660.1	21798944
AT2G24550.1	HORVU3Hr1G095080.3	AT2G45660.1	21798944
AT2G24550.1	HORVU3Hr1G095090.1	AT2G45660.1	21798944
AT2G24550.1	HORVU3Hr1G095200.4	AT2G45660.1	21798944
AT2G24550.1	HORVU3Hr1G095240.2	AT2G45660.1	21798944
AT2G24550.1	HORVU4Hr1G085370.1	AT2G45660.1	21798944
AT2G24550.1	HORVU4Hr1G085450.1	AT2G45660.1	21798944
AT2G24550.1	HORVU6Hr1G002270.1	AT2G45660.1	21798944
AT2G24550.1	HORVU6Hr1G002330.14	AT2G45660.1	21798944
AT2G24550.1	HORVU7Hr1G054320.2	AT2G45660.1	21798944
AT2G24550.1	HORVU7Hr1G054390.1	AT2G45660.1	21798944
AT2G24550.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT2G24550.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944
AT2G24550.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT2G24550.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT2G24550.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT2G24550.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT2G24550.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G277200.1	Wheat	nucleus	65.05	86.64
TraesCS5D01G284800.1	Wheat	nucleus	64.13	85.43
TraesCS5A01G277500.1	Wheat	nucleus	64.74	84.86
Zm00001d021006_P001	Maize	nucleus	47.42	60.47
EER99130	Sorghum	nucleus	45.59	58.37
Os09t0499000-01	Rice	nucleus	45.59	57.92
Zm00001d006059_P001	Maize	nucleus	45.9	57.63
HORVU7Hr1G052580.1	Barley	nucleus	37.99	45.62
GSMUA_Achr7P15940_001	Banana	nucleus	30.09	44.8
GSMUA_Achr9P13850_001	Banana	nucleus	29.18	42.67
GSMUA_Achr3P05640_001	Banana	nucleus	28.57	40.34
CDY19822	Canola	nucleus	21.58	30.74
CDY68667	Canola	cytosol	13.98	30.67
KRH52604	Soybean	nucleus	23.1	30.16
Bra036527.1-P	Field mustard	nucleus	20.97	30.13
CDX87106	Canola	nucleus	20.67	29.57
KRH61944	Soybean	nucleus	22.8	29.53
CDY05462	Canola	nucleus	19.15	29.3
Bra020475.1-P	Field mustard	nucleus	19.15	29.17
CDY05394	Canola	nucleus	18.54	27.85
Bra031516.1-P	Field mustard	nucleus	17.33	27.8
CDX88142	Canola	nucleus	19.15	27.75
Bra009802.1-P	Field mustard	nucleus	19.15	27.75
Solyc08g068970.2.1	Tomato	nucleus	14.89	27.68
CDX72307	Canola	nucleus	17.93	27.57
AT5G24890.1	Thale cress	nucleus	19.76	27.08
CDY55465	Canola	nucleus	19.15	26.92
VIT_01s0113g00410.t01	Wine grape	mitochondrion, nucleus	13.98	26.74
AT4G31510.1	Thale cress	nucleus	17.02	26.17
AT2G24550.1	Thale cress	nucleus	19.15	25.71
Bra024004.1-P	Field mustard	nucleus	16.72	25.58
PGSC0003DMT400086234	Potato	nucleus	13.68	25.57
CDY36435	Canola	nucleus	17.02	25.45
CDY13436	Canola	nucleus	16.41	25.23
CDY23302	Canola	nucleus	16.72	25.0
Bra010233.1-P	Field mustard	nucleus	16.72	25.0
CDY45582	Canola	nucleus	18.84	24.6
Bra032085.1-P	Field mustard	nucleus	19.15	24.42
Bra007841.1-P	Field mustard	nucleus	17.93	24.18
CDX76805	Canola	nucleus	17.63	23.77
CDY20324	Canola	nucleus	17.93	22.87
KRH04949	Soybean	extracellular, vacuole	21.28	21.81

Protein Annotations

EnsemblPlants:HORVU5Hr1G075200.2	EnsemblPlantsGene:HORVU5Hr1G075200	PANTHER:PTHR33172	PANTHER:PTHR33172:SF4	SEG:seg	UniParc:UPI000B46E1B8
UniProt:A0A287RTX0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:546259103..546260686

Molecular Weight (calculated)

35244.8 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.565

Length

329 amino acids

Sequence
(BLAST)

001: VSLQRPRLPN SSPVVALILS HHPFLPLPSL SLSLSLLQVA AELVFVLVLG RTNPSPIRDL LRGRRWHHRP DRRFRGADMS TAVAEAFQSY GGFPGSGRTK
101: GDALLGKKMS DGFFIEEEEE DEAEEVLTES SSIGAPSPSS SSIGEDSSSE VGGDGEDDEV ESKLKEEPGL GCLDALEDSL PIKNGLSSFY AGKSKSFTSL
201: AEAAARDAVK ELAKPENPFN KRRRILATWS RRASCSSLAT ATYLPPLLAP DHALPEGDEG EEDDDSDSGS DEQHRGKNGW EAPALPPPRL SVNTQTGAAA
301: AARRGGSFRS PRSYSLSDLR NGGDASYNQ

Best Arabidopsis Sequence Match ( AT2G24550.1 )
(BLAST)

001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE

Arabidopsis Description

At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.