Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G346700.1 | Wheat | mitochondrion | 45.79 | 58.14 |
| TraesCS6D01G295500.1 | Wheat | mitochondrion | 45.79 | 57.87 |
| TraesCS6A01G316200.1 | Wheat | mitochondrion | 45.42 | 57.67 |
| Os02t0758000-01 | Rice | plastid | 42.12 | 52.27 |
| OQU85385 | Sorghum | mitochondrion | 40.29 | 49.77 |
| Zm00001d052194_P001 | Maize | mitochondrion | 38.83 | 48.62 |
| GSMUA_Achr10P... | Banana | mitochondrion | 31.87 | 40.28 |
| KRH23958 | Soybean | mitochondrion | 31.14 | 40.09 |
| KRH39841 | Soybean | mitochondrion | 21.25 | 39.46 |
| HORVU7Hr1G036500.7 | Barley | plastid | 29.3 | 39.22 |
| AT5G51440.1 | Thale cress | mitochondrion | 28.21 | 36.67 |
| CDY00476 | Canola | mitochondrion | 21.61 | 36.65 |
| Solyc08g078700.2.1 | Tomato | plastid | 27.84 | 36.19 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 27.84 | 36.02 |
| CDX99920 | Canola | mitochondrion | 20.88 | 35.62 |
| Bra028253.1-P | Field mustard | mitochondrion | 20.88 | 35.4 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 25.64 | 34.83 |
| CDY38862 | Canola | mitochondrion | 24.91 | 34.69 |
| Bra029174.1-P | Field mustard | mitochondrion | 24.91 | 34.52 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 25.27 | 34.33 |
| HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 30.4 | 34.3 |
| Bra013872.1-P | Field mustard | mitochondrion | 26.37 | 33.8 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 25.64 | 33.65 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 27.11 | 33.48 |
| CDX89437 | Canola | mitochondrion | 26.01 | 33.33 |
| CDY03368 | Canola | mitochondrion | 26.01 | 33.33 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 30.77 | 32.56 |
| AT4G25200.1 | Thale cress | mitochondrion | 24.91 | 32.38 |
| CDY32630 | Canola | mitochondrion | 19.78 | 31.76 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 17.22 | 23.98 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 16.85 | 23.59 |
| PGSC0003DMT400012246 | Potato | plastid | 13.55 | 21.76 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 13.19 | 21.43 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G077710.3 | EnsemblPlantsGene:HORVU6Hr1G077710 | Gene3D:2.60.40.790 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0008150 |
| GO:GO:0009408 | GO:GO:0009628 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 |
| InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | PFAM:PF00011 | PFscan:PS01031 | SEG:seg |
| SUPFAM:SSF49764 | UniParc:UPI000B47E867 | UniProt:A0A287UT21 | MapMan:19.1.8.8 | : | : |
Description
No Description!
Coordinates
chrchr6H:+:531940326..531941429
Molecular Weight (calculated)
29743.8 Da
IEP (calculated)
8.323
GRAVY (calculated)
-0.630
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: RQQNPETSEQ DSHSQGEKGE RGEWLQGWWP PAGSRWCAPW RTSWPRRPAR LSGRLPSPSA SAGTTPARPS AATTGTRRSK TPATAAAARA SAVPPCPASS
101: QVAVFSNRAA PIAAETNAWP SCCNLQYHFR GELVADVFRD PFSAPQSLGR LLNMMDDVAA AGAPVGARAA PLRLGWNAKE DEDALRLRVD MPGLGKEHVK
201: VWAEQNSLVI KGEGEKESEE EDGFAAPRYS GRLELTGDVY RMDQIKAEMK NGVLRVVVPK VEKRTDVYEV NVD
101: QVAVFSNRAA PIAAETNAWP SCCNLQYHFR GELVADVFRD PFSAPQSLGR LLNMMDDVAA AGAPVGARAA PLRLGWNAKE DEDALRLRVD MPGLGKEHVK
201: VWAEQNSLVI KGEGEKESEE EDGFAAPRYS GRLELTGDVY RMDQIKAEMK NGVLRVVVPK VEKRTDVYEV NVD
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
Arabidopsis Description
HSP23.523.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.