Factsheet for VIT_02s0154g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0154g00490.t01	Wine grape	mitochondrion	84.08	84.08
PGSC0003DMT400012249	Potato	mitochondrion	63.68	60.66
Solyc08g078700.2.1	Tomato	plastid	62.69	60.0
VIT_16s0022g00510.t01	Wine grape	mitochondrion	58.21	56.25
GSMUA_Achr10P...	Banana	mitochondrion	51.74	48.15
TraesCS7D01G178900.1	Wheat	cytosol	28.86	47.54
OQU85385	Sorghum	mitochondrion	48.76	44.34
Os02t0758000-01	Rice	plastid	46.27	42.27
Zm00001d052194_P001	Maize	mitochondrion	45.27	41.74
TraesCS7B01G083300.1	Wheat	cytosol	26.87	40.6
TraesCS6B01G346700.1	Wheat	mitochondrion	43.28	40.47
TraesCS6A01G316200.1	Wheat	mitochondrion	42.79	40.0
TraesCS6D01G295500.1	Wheat	mitochondrion	42.79	39.81
TraesCS7A01G232500.1	Wheat	plastid	38.31	37.38
TraesCS7D01G179400.1	Wheat	plastid	38.81	37.14
TraesCS7D01G179000.1	Wheat	plastid	39.3	37.09
TraesCS7D01G232600.1	Wheat	plastid	38.31	36.84
HORVU7Hr1G036500.7	Barley	plastid	37.31	36.76
TraesCS7B01G083100.1	Wheat	plastid	38.81	36.62
TraesCS7B01G082900.1	Wheat	plastid	35.82	36.0
TraesCS7D01G179200.1	Wheat	cytosol, plastid	37.31	35.89
TraesCS7D01G179300.1	Wheat	plastid	37.81	35.85
TraesCS7A01G236700.1	Wheat	plastid	37.81	35.85
TraesCS7D01G179100.1	Wheat	plastid	38.31	35.81
TraesCS7B01G083500.1	Wheat	mitochondrion	41.29	35.62
TraesCS7A01G177700.1	Wheat	cytosol, plastid	37.81	35.19
TraesCS7A01G177500.1	Wheat	cytosol, plastid	37.81	35.19
TraesCS7D01G179600.1	Wheat	mitochondrion	40.8	35.04
TraesCS7D01G179500.1	Wheat	plastid	37.31	34.88
TraesCS7A01G177600.1	Wheat	plastid	36.82	34.42
TraesCS7B01G083200.2	Wheat	plastid	37.81	34.39
TraesCS7B01G083400.1	Wheat	plastid	36.32	34.27
TraesCS2B01G531300.1	Wheat	plastid	29.85	34.09
OQU75930	Sorghum	plastid	35.32	31.84
OQU75612	Sorghum	plastid	35.32	31.84
OQU76071	Sorghum	plastid	31.84	31.68
HORVU7Hr1G036570.2	Barley	cytosol	34.83	31.67
TraesCS7B01G130900.1	Wheat	plastid	25.37	31.48
EER89430	Sorghum	plastid	35.32	31.28
Zm00001d044874_P001	Maize	cytosol, plastid	32.34	31.25
HORVU7Hr1G036470.3	Barley	cytosol, nucleus	36.82	30.58
HORVU7Hr1G036540.3	Barley	mitochondrion, nucleus, plastid	37.81	29.46
TraesCS7A01G177800.1	Wheat	nucleus	32.84	28.7
EER89431	Sorghum	plastid	29.35	27.19
KXG19616	Sorghum	plastid	34.83	26.02
HORVU6Hr1G077710.3	Barley	cytosol	34.83	25.64
Os06t0219500-00	Rice	mitochondrion	33.83	22.01
TraesCS5B01G123900.1	Wheat	plastid	24.38	20.5

Protein Annotations

EntrezGene:100243757	wikigene:100243757	MapMan:19.1.8.8	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CBI31920
ProteinID:CBI31920.3	UniProt:D7TN47	EMBL:FN596001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100243757	wikigene:LOC100243757	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF136	SUPFAM:SSF49764	TIGR:TC56467	UniParc:UPI00015CDCD0	ArrayExpress:VIT_02s0154g00480	EnsemblPlantsGene:VIT_02s0154g00480
EnsemblPlants:VIT_02s0154g00480.t01	unigene:Vvi.6940	RefSeq:XP_002270632	RefSeq:XP_002270632.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:5248542..5250041

Molecular Weight (calculated)

22455.8 Da

IEP (calculated)

9.844

GRAVY (calculated)

-0.531

Length

201 amino acids

Sequence
(BLAST)

001: MASSLALRRA TSSPLFTKLV SPIRVASASR SFNTNAQVAD YNDGEDRRTV SRPRYSPSNL FSDVFDPFSR TRSLSQVLNL MDQFMENPLV AASRGMGAVS
101: RRGWDVKEEK DALFVRMDMP GLGKEDVKVS VEQNTLIIKG EGGKELENDE TGRKYTSRID LPANLYKFDE IKAEMKNGVL KVVVPKVKED GKKDAFQVNI
201: N

Best Arabidopsis Sequence Match ( AT4G25200.1 )
(BLAST)

001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN

Arabidopsis Description

HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.