Factsheet for VIT_02s0154g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0154g00480.t01	Wine grape	mitochondrion, plastid	84.08	84.08
PGSC0003DMT400012249	Potato	mitochondrion	57.71	54.98
Solyc08g078700.2.1	Tomato	plastid	56.22	53.81
VIT_16s0022g00510.t01	Wine grape	mitochondrion	55.22	53.37
TraesCS7D01G178900.1	Wheat	cytosol	27.86	45.9
GSMUA_Achr10P...	Banana	mitochondrion	46.77	43.52
OQU85385	Sorghum	mitochondrion	47.26	42.99
Os02t0758000-01	Rice	plastid	43.28	39.55
Zm00001d052194_P001	Maize	mitochondrion	42.79	39.45
TraesCS6A01G316200.1	Wheat	mitochondrion	41.29	38.6
TraesCS7B01G083300.1	Wheat	cytosol	25.37	38.35
TraesCS6B01G346700.1	Wheat	mitochondrion	40.8	38.14
TraesCS6D01G295500.1	Wheat	mitochondrion	40.8	37.96
TraesCS7D01G232600.1	Wheat	plastid	37.31	35.89
TraesCS7D01G179100.1	Wheat	plastid	38.31	35.81
TraesCS7D01G179400.1	Wheat	plastid	37.31	35.71
TraesCS7D01G179000.1	Wheat	plastid	37.81	35.68
TraesCS7A01G232500.1	Wheat	plastid	36.32	35.44
TraesCS7A01G236700.1	Wheat	plastid	37.31	35.38
HORVU7Hr1G036500.7	Barley	plastid	35.82	35.29
TraesCS7B01G083100.1	Wheat	plastid	37.31	35.21
TraesCS7D01G179200.1	Wheat	cytosol, plastid	36.32	34.93
TraesCS7B01G083500.1	Wheat	mitochondrion	40.3	34.76
TraesCS7A01G177700.1	Wheat	cytosol, plastid	36.82	34.26
TraesCS7A01G177500.1	Wheat	cytosol, plastid	36.82	34.26
TraesCS7D01G179600.1	Wheat	mitochondrion	39.8	34.19
TraesCS7B01G082900.1	Wheat	plastid	33.83	34.0
TraesCS7D01G179300.1	Wheat	plastid	35.82	33.96
TraesCS7D01G179500.1	Wheat	plastid	36.32	33.95
TraesCS7A01G177600.1	Wheat	plastid	35.82	33.49
TraesCS7B01G083200.2	Wheat	plastid	36.32	33.03
TraesCS7B01G083400.1	Wheat	plastid	34.83	32.86
Zm00001d044874_P001	Maize	cytosol, plastid	32.34	31.25
TraesCS2B01G531300.1	Wheat	plastid	27.36	31.25
OQU76071	Sorghum	plastid	31.34	31.19
TraesCS7B01G130900.1	Wheat	plastid	24.88	30.86
OQU75930	Sorghum	plastid	33.83	30.49
OQU75612	Sorghum	plastid	33.83	30.49
EER89430	Sorghum	plastid	34.33	30.4
HORVU7Hr1G036570.2	Barley	cytosol	32.84	29.86
TraesCS7A01G177800.1	Wheat	nucleus	32.84	28.7
HORVU7Hr1G036540.3	Barley	mitochondrion, nucleus, plastid	36.82	28.68
HORVU7Hr1G036470.3	Barley	cytosol, nucleus	34.33	28.51
EER89431	Sorghum	plastid	29.85	27.65
HORVU6Hr1G077710.3	Barley	cytosol	34.33	25.27
KXG19616	Sorghum	plastid	33.33	24.91
Os06t0219500-00	Rice	mitochondrion	31.84	20.71
TraesCS5B01G123900.1	Wheat	plastid	22.89	19.25

Protein Annotations

EntrezGene:100248906	wikigene:100248906	MapMan:19.1.8.8	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CBI31921
ProteinID:CBI31921.3	UniProt:D7TN48	EMBL:FN596001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100248906	wikigene:LOC100248906	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF136	SUPFAM:SSF49764	UniParc:UPI00015CDCCF	ArrayExpress:VIT_02s0154g00490	EnsemblPlantsGene:VIT_02s0154g00490	EnsemblPlants:VIT_02s0154g00490.t01
RefSeq:XP_002270596	RefSeq:XP_002270596.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:5255141..5256154

Molecular Weight (calculated)

22551.0 Da

IEP (calculated)

9.639

GRAVY (calculated)

-0.561

Length

201 amino acids

Sequence
(BLAST)

001: MASSLAPRRA ASSPLLAKLV GTIRVASASR SFNTNAQVAD YDDGEDRRTV SRPRYSPSNL FADAFDPFSR TRSLIQTLNL MDRFMKSPLV AAAQGMGAVS
101: RRGWDVKEEK DALFVRMDMP GLGKEDVKVS VEQNTLTIKG EEGEKWENDE CRRKYTSRID LPAKMYKFDE IKADMKNGVL KVVVPKVKED GRKEVLQVDI
201: D

Best Arabidopsis Sequence Match ( AT4G25200.1 )
(BLAST)

001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN

Arabidopsis Description

HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.