Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G179500.1 | Wheat | plastid | 87.56 | 85.12 |
| TraesCS7B01G082900.1 | Wheat | plastid | 80.86 | 84.5 |
| TraesCS7D01G179300.1 | Wheat | plastid | 85.17 | 83.96 |
| TraesCS7D01G179000.1 | Wheat | plastid | 84.21 | 82.63 |
| TraesCS7D01G179100.1 | Wheat | plastid | 84.21 | 81.86 |
| TraesCS7D01G232600.1 | Wheat | plastid | 80.38 | 80.38 |
| TraesCS7D01G179400.1 | Wheat | plastid | 79.9 | 79.52 |
| HORVU7Hr1G036500.7 | Barley | plastid | 73.68 | 75.49 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 75.12 | 71.04 |
| HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 77.99 | 67.36 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 80.38 | 65.12 |
| TraesCS7D01G178900.1 | Wheat | cytosol | 35.89 | 61.48 |
| TraesCS7D01G179600.1 | Wheat | mitochondrion | 63.16 | 56.41 |
| TraesCS6D01G295500.1 | Wheat | mitochondrion | 43.54 | 42.13 |
| OQU76071 | Sorghum | plastid | 39.23 | 40.59 |
| Zm00001d044874_P001 | Maize | cytosol, plastid | 39.71 | 39.9 |
| EER89430 | Sorghum | plastid | 43.06 | 39.65 |
| Solyc08g078700.2.1 | Tomato | plastid | 39.71 | 39.52 |
| KRH39841 | Soybean | mitochondrion | 27.75 | 39.46 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 39.71 | 39.34 |
| KRH23958 | Soybean | mitochondrion | 39.71 | 39.15 |
| OQU75930 | Sorghum | plastid | 40.19 | 37.67 |
| OQU75612 | Sorghum | plastid | 40.19 | 37.67 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 35.89 | 37.31 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 36.36 | 36.54 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 34.93 | 36.32 |
| CDY38862 | Canola | mitochondrion | 33.97 | 36.22 |
| AT5G51440.1 | Thale cress | mitochondrion | 36.36 | 36.19 |
| AT4G25200.1 | Thale cress | mitochondrion | 36.36 | 36.19 |
| Bra029174.1-P | Field mustard | mitochondrion | 33.49 | 35.53 |
| CDY00476 | Canola | mitochondrion | 26.79 | 34.78 |
| CDX89437 | Canola | mitochondrion | 35.41 | 34.74 |
| Bra013872.1-P | Field mustard | mitochondrion | 35.41 | 34.74 |
| CDY03368 | Canola | mitochondrion | 34.93 | 34.27 |
| GSMUA_Achr10P... | Banana | mitochondrion | 34.93 | 33.8 |
| CDY32630 | Canola | mitochondrion | 27.27 | 33.53 |
| CDX99920 | Canola | mitochondrion | 24.88 | 32.5 |
| EER89431 | Sorghum | plastid | 33.49 | 32.26 |
| Bra028253.1-P | Field mustard | mitochondrion | 23.92 | 31.06 |
| KXG19616 | Sorghum | plastid | 37.8 | 29.37 |
| Os06t0219500-00 | Rice | mitochondrion | 39.71 | 26.86 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 21.05 | 22.56 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 21.05 | 22.45 |
| PGSC0003DMT400012246 | Potato | plastid | 16.27 | 20.0 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 14.83 | 18.45 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G179200.1 | EnsemblPlantsGene:TraesCS7D01G179200 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06464 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7D:+:132197407..132198295
Molecular Weight (calculated)
22951.2 Da
IEP (calculated)
5.432
GRAVY (calculated)
-0.459
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVVCKGE DSAPASLLKS SAPVAFCPLR SPAVTAGRRP YNTQAKEVSR YYDDDDDDYS ARDLVTPSFF SQDVLDSLGA PTSMARLLSL MKAGLSSPAG
101: TGASRLGRWV AKEDDDAVYL KVPMPGLTKD HVEVRADKNI LVIKGEGEKQ PWDGDDDSAV PKYNRRIEVP ADAYKMDKIK AEMKNGVLWV TLLKVKEDER
201: KDVFHVKVE
101: TGASRLGRWV AKEDDDAVYL KVPMPGLTKD HVEVRADKNI LVIKGEGEKQ PWDGDDDSAV PKYNRRIEVP ADAYKMDKIK AEMKNGVLWV TLLKVKEDER
201: KDVFHVKVE
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
Arabidopsis Description
HSP23.523.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.