Factsheet for TraesCS1D01G068600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G056600.1	Wheat	mitochondrion	39.71	66.83
TraesCS1D01G057800.1	Wheat	mitochondrion	66.76	62.53
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	37.94	56.58
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	55.29	54.97
TraesCS7D01G231400.1	Wheat	cytosol, plastid	47.65	40.2
TraesCS1D01G069100.1	Wheat	mitochondrion	70.59	37.33
TraesCS1D01G058000.1	Wheat	cytosol	43.82	36.7
Os04t0349600-01	Rice	plastid	41.18	36.18
TraesCS6D01G083400.1	Wheat	mitochondrion	49.71	34.28
TraesCS6D01G083300.1	Wheat	mitochondrion	44.41	33.86
TraesCS6D01G083100.1	Wheat	cytosol	47.06	32.65
TraesCS1D01G068900.1	Wheat	mitochondrion	77.35	32.35
TraesCS6D01G290900.1	Wheat	mitochondrion	69.71	32.33
TraesCS1D01G068400.1	Wheat	mitochondrion	78.24	32.32
TraesCS1D01G068800.1	Wheat	plastid	75.59	31.5
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	44.41	31.39
TraesCS1D01G068500.1	Wheat	mitochondrion	74.12	31.03
TraesCS1D01G056200.1	Wheat	mitochondrion	69.12	28.48
TraesCS6D01G076500.1	Wheat	plastid	36.47	27.37
TraesCS1D01G076900.1	Wheat	plastid	48.24	24.96
TraesCS1D01G058500.1	Wheat	plastid	41.47	24.74
TraesCS1D01G076400.1	Wheat	cytosol	26.18	24.52
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.47	24.24
KXG28799	Sorghum	plastid	53.82	24.08
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	55.59	24.02
TraesCS2D01G532600.1	Wheat	plastid	54.71	23.97
TraesCS2D01G532300.1	Wheat	plastid	54.12	23.65
Solyc06g007280.2.1	Tomato	cytosol	16.76	22.35
Zm00001d007534_P001	Maize	plastid	50.88	22.27
Zm00001d007531_P001	Maize	plastid	51.47	21.5
Zm00001d007559_P001	Maize	plastid	51.47	21.42
Zm00001d007548_P001	Maize	plastid	51.18	21.38
Zm00001d007555_P001	Maize	plastid	50.29	21.01
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	42.65	20.8
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	40.88	20.65
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	43.24	19.19
TraesCS2D01G532400.1	Wheat	cytosol	34.41	19.15
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	35.59	18.36
TraesCS6D01G047700.1	Wheat	mitochondrion	36.47	17.95
TraesCS2D01G532100.1	Wheat	mitochondrion	36.47	17.92
TraesCS2D01G532500.1	Wheat	plastid	35.29	17.65
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	36.76	17.48
TraesCS1D01G076500.1	Wheat	mitochondrion	33.82	17.32
KRH40513	Soybean	plastid	17.06	16.52
TraesCS1D01G058400.1	Wheat	cytosol	25.0	16.5
AT1G62914.1	Thale cress	mitochondrion	25.29	16.29
KRH09084	Soybean	plastid	24.12	16.05
AT5G16640.1	Thale cress	mitochondrion	23.53	15.87
TraesCS1D01G056700.1	Wheat	cytosol	27.94	15.65
Bra021192.1-P	Field mustard	plastid	22.35	15.08
TraesCS1D01G055300.1	Wheat	cytosol	27.35	15.05
KRH17148	Soybean	mitochondrion	24.12	15.05
KRH08639	Soybean	mitochondrion, plastid	25.0	15.04
KRH39050	Soybean	mitochondrion	23.24	14.85
VIT_14s0030g02280.t01	Wine grape	plastid	24.41	14.79
Os04t0351333-00	Rice	cytosol	37.94	14.68
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.59	14.68
KRH08628	Soybean	plastid	23.53	14.49
KRH08625	Soybean	plastid	24.41	14.41
KRH09154	Soybean	mitochondrion	23.53	14.39
AT1G63400.1	Thale cress	cytosol, plastid	24.41	14.38
Bra036649.1-P	Field mustard	cytosol	16.47	14.32
KRH40400	Soybean	plastid	24.12	14.21
KRH39004	Soybean	cytosol	20.59	14.08
KRH39054	Soybean	cytosol	20.59	14.08
KRH39057	Soybean	cytosol	20.59	14.08
KRH41817	Soybean	mitochondrion	22.94	14.05
AT4G26800.2	Thale cress	mitochondrion, plastid	21.18	14.01
Bra027026.1-P	Field mustard	mitochondrion	21.47	13.96
KRH08671	Soybean	cytosol, mitochondrion	22.65	13.92
KRH39072	Soybean	cytosol	20.29	13.91
PGSC0003DMT400053185	Potato	mitochondrion	24.12	13.9
Solyc06g007740.1.1	Tomato	cytosol	24.12	13.9
KRH39112	Soybean	cytosol	20.29	13.88
Bra036651.1-P	Field mustard	mitochondrion	21.76	13.83
KRH48615	Soybean	mitochondrion	22.06	13.76
KRH08277	Soybean	plastid	22.94	13.76
KRH39074	Soybean	cytosol	20.0	13.68
KRH09121	Soybean	mitochondrion	21.47	13.67
AT1G62670.1	Thale cress	mitochondrion	25.29	13.65
VIT_14s0081g00270.t01	Wine grape	plastid	23.24	13.62
VIT_14s0081g00120.t01	Wine grape	plastid	23.24	13.55
KRH08607	Soybean	cytosol	22.35	13.55
AT1G63080.3	Thale cress	mitochondrion	24.41	13.52
KRH09095	Soybean	plastid	23.24	13.5
AT1G63130.1	Thale cress	mitochondrion	25.0	13.49
AT1G63330.2	Thale cress	cytosol	22.06	13.42
PGSC0003DMT400025074	Potato	cytosol	21.76	13.41
AT1G62720.1	Thale cress	mitochondrion	19.12	13.4
AT1G64580.1	Thale cress	mitochondrion	20.59	13.38
KRH09097	Soybean	plastid	22.94	13.38
AT1G62930.1	Thale cress	plastid	24.71	13.35
PGSC0003DMT400053556	Potato	mitochondrion	17.94	13.29
PGSC0003DMT400056663	Potato	plastid	22.94	13.27
KRH39066	Soybean	cytosol	21.47	13.15
Bra026401.1-P	Field mustard	plastid	20.59	13.08
PGSC0003DMT400056665	Potato	mitochondrion	22.65	13.07
AT1G12775.1	Thale cress	cytosol, mitochondrion	24.71	13.04
AT1G12300.1	Thale cress	mitochondrion	24.41	13.03
KRH08636	Soybean	cytosol	20.0	13.03
AT3G16710.1	Thale cress	mitochondrion	19.41	13.02
AT1G62910.1	Thale cress	mitochondrion	24.12	12.97
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.0	12.95
AT1G62590.1	Thale cress	mitochondrion	24.12	12.93
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.53	12.92
AT1G64583.1	Thale cress	mitochondrion	19.41	12.89
Solyc06g007300.1.1	Tomato	extracellular	22.35	12.84
Solyc06g005220.2.1	Tomato	cytosol	15.29	12.81
AT1G06580.1	Thale cress	mitochondrion	18.82	12.8
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.94	12.79
Bra026954.1-P	Field mustard	mitochondrion	24.41	12.77
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.53	12.73
AT1G63070.1	Thale cress	mitochondrion	22.06	12.71
Bra016762.1-P	Field mustard	mitochondrion	22.65	12.69
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.82	12.67
PGSC0003DMT400052971	Potato	mitochondrion	22.06	12.65
Bra028267.1-P	Field mustard	mitochondrion	23.24	12.62
Bra026971.1-P	Field mustard	mitochondrion	23.24	12.56
Bra026958.1-P	Field mustard	mitochondrion	23.53	12.56
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.65	12.4
PGSC0003DMT400025067	Potato	cytosol	17.35	12.39
Bra027636.1-P	Field mustard	cytosol	11.76	12.35
AT5G41170.1	Thale cress	mitochondrion	19.12	12.33
KXG35774	Sorghum	cytosol, mitochondrion	17.06	12.26
AT1G63150.1	Thale cress	mitochondrion	22.65	12.24
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.94	12.21
Bra026882.1-P	Field mustard	cytosol	19.12	12.17
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.41	12.15
VIT_14s0081g00110.t01	Wine grape	cytosol	17.35	12.02
Bra026957.1-P	Field mustard	mitochondrion	21.18	11.94
AT1G62680.2	Thale cress	plastid	19.12	11.86
PGSC0003DMT400053182	Potato	cytosol	20.88	11.85
KRH25652	Soybean	cytosol, golgi	18.82	11.85
AT1G12700.2	Thale cress	cytosol	21.47	11.81
KRH31646	Soybean	cytosol	17.94	11.78
PGSC0003DMT400008760	Potato	mitochondrion	20.29	11.77
Solyc04g080120.1.1	Tomato	extracellular	21.18	11.76
TraesCS6D01G017800.1	Wheat	cytosol	18.24	11.55
TraesCS6D01G017700.1	Wheat	plastid	17.94	11.42
PGSC0003DMT400015293	Potato	mitochondrion	20.29	11.31
PGSC0003DMT400015298	Potato	mitochondrion	20.29	11.31
PGSC0003DMT400008757	Potato	cytosol	16.47	11.24
PGSC0003DMT400052977	Potato	cytosol	12.65	11.05
KRH09085	Soybean	mitochondrion	22.65	10.94
Bra031731.1-P	Field mustard	mitochondrion	16.18	10.83
Bra027029.1-P	Field mustard	mitochondrion	7.65	10.7
KRH08599	Soybean	cytosol, plastid	20.88	10.61
KRH09082	Soybean	cytosol	12.65	10.54
Bra026884.1-P	Field mustard	cytosol	13.82	10.24
Bra027726.1-P	Field mustard	mitochondrion	14.12	10.19
AT1G64100.2	Thale cress	cytosol	22.65	9.55
KRH39064	Soybean	cytosol	23.53	8.26
KRH12873	Soybean	cytosol	16.76	8.19
Bra027656.1-P	Field mustard	cytosol	22.65	8.18
Bra026836.1-P	Field mustard	cytosol, mitochondrion	10.88	7.54
Bra016758.1-P	Field mustard	plastid	23.82	6.99
Bra006187.1-P	Field mustard	plastid	5.88	6.87
PGSC0003DMT400008759	Potato	cytosol	4.71	5.02
VIT_14s0030g02260.t01	Wine grape	cytosol	5.59	4.29
CDX68679	Canola	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0
TraesCS1D01G033000.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G057700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G067600.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G068700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G076700.1	Wheat	cytosol	0.0	0.0
TraesCS2D01G532200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G068600.1	EnsemblPlantsGene:TraesCS1D01G068600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:+:50007422..50008444

Molecular Weight (calculated)

37736.9 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.046

Length

340 amino acids

Sequence
(BLAST)

001: MSSIHLRHCS TMPMSHVCLR RRLSSSSSSF SNCTSPPSPP WSPHAAFAAA TERVRARTLS PEDAHHLFDV LFQQATPVPE RSLDGFLAAL SRATPSEACG
101: DGPALALTLF NRVCREEAGM QVVPPTIFTY GILMNCCCRE RRPDLGLAFF GRILKAGLKT NLITANTVLK CLYCAKHTDE AVDMLLHRMS DLGCVPDDFS
201: YNTVLHGFFK EGKIGKACNL FHEMMLQGFV PDVVTYNLII EALCKARAMD NAELFLRQMV DNVVPPDKVT YTSMIHGYST LGRWKEATKM FREMTSRGLI
301: PNIVTWSSFM DSLCKHGKSK EAAEIFFSMA GKGHKPNIVS

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.