Factsheet for TraesCS2D01G532500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G532400.1	Wheat	cytosol	83.24	92.64
TraesCS2D01G532200.1	Wheat	cytosol	38.38	89.08
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	84.85	87.56
TraesCS2D01G532100.1	Wheat	mitochondrion	87.35	85.84
TraesCS2D01G532600.1	Wheat	plastid	90.15	78.99
TraesCS2D01G532300.1	Wheat	plastid	88.97	77.76
TraesCS2A01G530600.1	Wheat	cytosol	85.59	76.08
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	38.09	59.0
TraesCS1D01G058400.1	Wheat	cytosol	43.68	57.67
TraesCS1D01G057700.1	Wheat	cytosol	26.62	55.69
TraesCS1D01G068700.1	Wheat	cytosol	35.0	54.21
TraesCS1D01G076700.1	Wheat	cytosol	26.62	54.19
TraesCS1D01G076500.1	Wheat	mitochondrion	52.21	53.46
TraesCS1D01G055300.1	Wheat	cytosol	48.53	53.4
TraesCS1D01G033000.1	Wheat	cytosol	31.32	52.72
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	53.97	52.65
TraesCS1D01G056700.1	Wheat	cytosol	46.91	52.55
TraesCS1D01G067600.1	Wheat	cytosol	27.94	52.05
TraesCS1D01G058000.1	Wheat	cytosol	30.0	50.25
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	49.41	49.93
TraesCS6D01G017800.1	Wheat	cytosol	37.94	48.04
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	55.15	47.35
TraesCS1D01G056200.1	Wheat	mitochondrion	56.76	46.79
TraesCS1D01G068500.1	Wheat	mitochondrion	55.74	46.67
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	53.97	46.63
TraesCS1D01G068900.1	Wheat	mitochondrion	55.59	46.49
TraesCS6D01G017700.1	Wheat	plastid	36.18	46.07
TraesCS1D01G068800.1	Wheat	plastid	54.85	45.71
TraesCS1D01G068400.1	Wheat	mitochondrion	55.15	45.56
TraesCS1D01G076400.1	Wheat	cytosol	24.12	45.18
TraesCS1D01G058500.1	Wheat	plastid	37.06	44.21
TraesCS6D01G290900.1	Wheat	mitochondrion	46.91	43.52
TraesCS1D01G069100.1	Wheat	mitochondrion	40.0	42.3
TraesCS6D01G083300.1	Wheat	mitochondrion	27.5	41.93
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	43.82	41.68
TraesCS6D01G083400.1	Wheat	mitochondrion	28.97	39.96
TraesCS1D01G076900.1	Wheat	plastid	37.65	38.97
TraesCS6D01G083100.1	Wheat	cytosol	27.06	37.55
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	25.44	35.97
TraesCS7D01G231400.1	Wheat	cytosol, plastid	21.03	35.48
TraesCS1D01G068600.1	Wheat	plastid	17.65	35.29
TraesCS6D01G047700.1	Wheat	mitochondrion	33.97	33.43
TraesCS1D01G057800.1	Wheat	mitochondrion	17.21	32.23
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	15.88	31.58
TraesCS6D01G076500.1	Wheat	plastid	20.88	31.35
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.74	29.56
VIT_14s0081g00110.t01	Wine grape	cytosol	21.32	29.53
PGSC0003DMT400052977	Potato	cytosol	16.76	29.31
KRH39074	Soybean	cytosol	21.32	29.18
KRH39054	Soybean	cytosol	21.03	28.77
KRH39112	Soybean	cytosol	21.03	28.77
Solyc06g007280.2.1	Tomato	cytosol	10.74	28.63
KRH39004	Soybean	cytosol	20.74	28.37
KRH40513	Soybean	plastid	14.56	28.21
CDX68679	Canola	cytosol	4.71	27.83
Bra027636.1-P	Field mustard	cytosol	13.24	27.78
KRH39057	Soybean	cytosol	20.29	27.77
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.59	27.72
KRH39072	Soybean	cytosol	20.15	27.62
Solyc06g007810.1.1	Tomato	cytosol	10.88	27.61
Solyc06g005220.2.1	Tomato	cytosol	16.47	27.59
KRH09082	Soybean	cytosol	16.47	27.45
KRH08636	Soybean	cytosol	20.88	27.2
Bra036649.1-P	Field mustard	cytosol	15.44	26.85
Bra006187.1-P	Field mustard	plastid	11.47	26.8
KRH17148	Soybean	mitochondrion	21.47	26.79
VIT_14s0081g00270.t01	Wine grape	plastid	22.65	26.55
KRH09084	Soybean	plastid	19.71	26.22
KRH39066	Soybean	cytosol	21.18	25.95
VIT_14s0081g00120.t01	Wine grape	plastid	22.21	25.9
KRH31646	Soybean	cytosol	19.71	25.87
KRH08607	Soybean	cytosol	21.18	25.67
Bra027029.1-P	Field mustard	mitochondrion	9.12	25.51
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.56	25.33
KRH08671	Soybean	cytosol, mitochondrion	20.59	25.32
Bra026884.1-P	Field mustard	cytosol	17.06	25.27
KRH08628	Soybean	plastid	20.44	25.18
KRH09121	Soybean	mitochondrion	19.71	25.09
PGSC0003DMT400008759	Potato	cytosol	11.76	25.08
KRH08277	Soybean	plastid	20.88	25.04
KRH09154	Soybean	mitochondrion	20.44	25.0
KRH25652	Soybean	cytosol, golgi	19.85	25.0
KRH48615	Soybean	mitochondrion	20.0	24.95
Bra026882.1-P	Field mustard	cytosol	19.56	24.91
PGSC0003DMT400008757	Potato	cytosol	18.24	24.9
KRH39050	Soybean	mitochondrion	19.41	24.81
KRH40400	Soybean	plastid	20.74	24.44
AT5G16640.1	Thale cress	mitochondrion	17.94	24.21
PGSC0003DMT400025067	Potato	cytosol	16.91	24.16
AT1G63330.2	Thale cress	cytosol	19.85	24.15
KRH08625	Soybean	plastid	20.44	24.13
KRH08639	Soybean	mitochondrion, plastid	20.0	24.07
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.21	23.64
KRH41817	Soybean	mitochondrion	19.26	23.6
PGSC0003DMT400025074	Potato	cytosol	19.12	23.55
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.47	23.48
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.06	23.47
Solyc06g007300.1.1	Tomato	extracellular	20.29	23.31
PGSC0003DMT400053185	Potato	mitochondrion	20.15	23.22
Solyc06g007740.1.1	Tomato	cytosol	20.15	23.22
Bra036651.1-P	Field mustard	mitochondrion	18.24	23.18
VIT_14s0030g02280.t01	Wine grape	plastid	19.12	23.17
AT1G62930.1	Thale cress	plastid	21.32	23.05
Bra031731.1-P	Field mustard	mitochondrion	17.21	23.03
PGSC0003DMT400052971	Potato	mitochondrion	20.0	22.93
AT1G62670.1	Thale cress	mitochondrion	21.18	22.86
AT1G06580.1	Thale cress	mitochondrion	16.76	22.8
PGSC0003DMT400015293	Potato	mitochondrion	20.44	22.79
PGSC0003DMT400015298	Potato	mitochondrion	20.44	22.79
AT1G64580.1	Thale cress	mitochondrion	17.5	22.75
Solyc04g080120.1.1	Tomato	extracellular	20.44	22.71
AT1G63400.1	Thale cress	cytosol, plastid	19.26	22.7
AT1G62720.1	Thale cress	mitochondrion	16.18	22.68
AT1G64583.1	Thale cress	mitochondrion	17.06	22.66
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.09	22.65
AT1G62680.2	Thale cress	plastid	18.24	22.63
Bra026971.1-P	Field mustard	mitochondrion	20.88	22.58
AT1G63070.1	Thale cress	mitochondrion	19.41	22.37
Bra027026.1-P	Field mustard	mitochondrion	17.21	22.37
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.29	22.22
KRH09095	Soybean	plastid	19.12	22.22
AT1G63080.3	Thale cress	mitochondrion	20.0	22.15
AT3G16710.1	Thale cress	mitochondrion	16.47	22.09
AT1G63130.1	Thale cress	mitochondrion	20.44	22.06
KRH09097	Soybean	plastid	18.82	21.96
AT1G63150.1	Thale cress	mitochondrion	20.29	21.94
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	7.35	21.93
Bra028267.1-P	Field mustard	mitochondrion	20.15	21.89
AT1G62910.1	Thale cress	mitochondrion	20.29	21.84
Bra026958.1-P	Field mustard	mitochondrion	20.44	21.82
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.85	21.81
TraesCS1D01G056600.1	Wheat	mitochondrion	6.47	21.78
VIT_14s0030g02260.t01	Wine grape	cytosol	14.12	21.67
AT1G12300.1	Thale cress	mitochondrion	20.29	21.66
PGSC0003DMT400056665	Potato	mitochondrion	18.53	21.39
PGSC0003DMT400053182	Potato	cytosol	18.82	21.37
AT1G62590.1	Thale cress	mitochondrion	19.85	21.29
PGSC0003DMT400056663	Potato	plastid	18.38	21.26
PGSC0003DMT400053556	Potato	mitochondrion	14.26	21.13
Bra016762.1-P	Field mustard	mitochondrion	18.82	21.09
Bra021192.1-P	Field mustard	plastid	15.59	21.03
Bra026954.1-P	Field mustard	mitochondrion	20.0	20.92
PGSC0003DMT400008760	Potato	mitochondrion	17.94	20.82
AT5G41170.1	Thale cress	mitochondrion	16.03	20.68
AT1G62914.1	Thale cress	mitochondrion	16.03	20.64
KRH08599	Soybean	cytosol, plastid	20.15	20.48
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.71	20.37
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.26	20.34
Bra026957.1-P	Field mustard	mitochondrion	17.79	20.07
AT1G12700.2	Thale cress	cytosol	18.09	19.9
Bra026401.1-P	Field mustard	plastid	15.44	19.63
Bra027726.1-P	Field mustard	mitochondrion	13.24	19.11
AT4G26800.2	Thale cress	mitochondrion, plastid	14.26	18.87
KRH09085	Soybean	mitochondrion	18.97	18.32
AT1G64100.2	Thale cress	cytosol	21.62	18.24
KRH12873	Soybean	cytosol	17.5	17.1
Bra027656.1-P	Field mustard	cytosol	22.35	16.15
KRH39064	Soybean	cytosol	21.91	15.38
Bra016758.1-P	Field mustard	plastid	19.12	11.22

Protein Annotations

EnsemblPlants:TraesCS2D01G532500.1	EnsemblPlantsGene:TraesCS2D01G532500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:617760376..617762418

Molecular Weight (calculated)

74982.3 Da

IEP (calculated)

7.867

GRAVY (calculated)

0.166

Length

680 amino acids

Sequence
(BLAST)

001: MARALPSPSS TACPEALVHG WCRCRAGRPD LVVAFFGRLL RLGLCLNVIS LSNLLKGLCQ VKRTNEAVDL LLHRTPELDC VPNVFSYSIV INGCFKQGEV
101: DKACNLFHGM IQLGVQPNVV IYTSIIDALS KCGAMDKAEV VFRQMVDKGI GPDVMTCTSL IHGYSISGRW KAAVRVFKEM ISLGVVPDTV MWNSFVDSLC
201: KHRRTKEARV IFDSMAAKGQ KPDTVSYSIM LNGYVKEGCF DDMTGLFNSM LQNGVVPNHH IFNILINAYA KRGLMDEAMH MFEVMRQQGV NPDVVDYQIV
301: MDSLCKMGRM DAALDKFNQM VNQGVSPDKA VYRCLVLGSC SHGDFVKAKE LISEAVNRGL CSNSVFFYPV INDLCKEGKV KEAQDMFDFI VGIGQRPDVI
401: MYNSLMDGYC LVGKVEEALR VLDAMKSAGL QPDAITYAIL LNGYCKIGRI ADGLSLFREM SLLGVKPTTI MYNIILDGLF RSGRTVSAKE KFRTMSESGI
501: PVGVDTYNIV LHGLCRNNCT DEAIELFNKL RAMKLKINVI TLNTMISAMF KTRRIEEAKD LFATISAIGL VPSVVTYSVM MTNFIKEGLL AEADDMFLAM
601: EKASCAPDSI LLNQVVRALL EKGAVVKAAT YLAKLDAKQL SVEASTISLI VSLFSGEGKL REHVQLLPVK YQPPESSADN

Best Arabidopsis Sequence Match ( AT3G22470.1 )
(BLAST)

001: MIQRLIPLNR KASNFTQILE KGTSLLHYSS ITEAKLSYKE RLRNGIVDIK VNDAIDLFES MIQSRPLPTP IDFNRLCSAV ARTKQYDLVL GFCKGMELNG
101: IEHDMYTMTI MINCYCRKKK LLFAFSVLGR AWKLGYEPDT ITFSTLVNGF CLEGRVSEAV ALVDRMVEMK QRPDLVTVST LINGLCLKGR VSEALVLIDR
201: MVEYGFQPDE VTYGPVLNRL CKSGNSALAL DLFRKMEERN IKASVVQYSI VIDSLCKDGS FDDALSLFNE MEMKGIKADV VTYSSLIGGL CNDGKWDDGA
301: KMLREMIGRN IIPDVVTFSA LIDVFVKEGK LLEAKELYNE MITRGIAPDT ITYNSLIDGF CKENCLHEAN QMFDLMVSKG CEPDIVTYSI LINSYCKAKR
401: VDDGMRLFRE ISSKGLIPNT ITYNTLVLGF CQSGKLNAAK ELFQEMVSRG VPPSVVTYGI LLDGLCDNGE LNKALEIFEK MQKSRMTLGI GIYNIIIHGM
501: CNASKVDDAW SLFCSLSDKG VKPDVVTYNV MIGGLCKKGS LSEADMLFRK MKEDGCTPDD FTYNILIRAH LGGSGLISSV ELIEEMKVCG FSADSSTIKM
601: VIDMLSDRRL DKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ83]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.