Factsheet for TraesCS1D01G058000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057800.1	Wheat	mitochondrion	46.55	52.07
TraesCS6D01G083300.1	Wheat	mitochondrion	54.43	49.55
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	91.13	47.44
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	80.3	46.77
TraesCS1D01G058400.1	Wheat	cytosol	56.16	44.27
TraesCS1D01G068600.1	Wheat	plastid	36.7	43.82
TraesCS6D01G083400.1	Wheat	mitochondrion	53.2	43.81
TraesCS6D01G083100.1	Wheat	cytosol	52.71	43.67
TraesCS7D01G231400.1	Wheat	cytosol, plastid	43.1	43.42
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	48.52	40.96
TraesCS1D01G076500.1	Wheat	mitochondrion	65.52	40.06
TraesCS1D01G055300.1	Wheat	cytosol	60.59	39.81
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	33.5	39.77
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	65.02	39.23
TraesCS1D01G056200.1	Wheat	mitochondrion	78.57	38.67
TraesCS6D01G290900.1	Wheat	mitochondrion	69.21	38.34
TraesCS1D01G056700.1	Wheat	cytosol	56.9	38.06
TraesCS1D01G069100.1	Wheat	mitochondrion	56.65	35.77
TraesCS1D01G068900.1	Wheat	mitochondrion	71.43	35.67
TraesCS1D01G068800.1	Wheat	plastid	71.67	35.66
TraesCS1D01G068400.1	Wheat	mitochondrion	71.18	35.12
TraesCS2D01G532400.1	Wheat	cytosol	51.23	34.04
TraesCS6D01G076500.1	Wheat	plastid	37.93	34.0
TraesCS1D01G068500.1	Wheat	mitochondrion	67.98	33.99
TraesCS1D01G076400.1	Wheat	cytosol	30.05	33.61
TraesCS1D01G076900.1	Wheat	plastid	52.96	32.72
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	18.23	32.46
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	52.46	32.32
TraesCS1D01G056600.1	Wheat	mitochondrion	15.02	30.2
TraesCS2D01G532500.1	Wheat	plastid	50.25	30.0
Solyc06g007280.2.1	Tomato	cytosol	18.72	29.8
KXG28799	Sorghum	plastid	55.66	29.74
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	57.64	29.73
Os04t0349600-01	Rice	plastid	28.33	29.72
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	57.88	29.67
TraesCS2D01G532100.1	Wheat	mitochondrion	50.25	29.48
Zm00001d007531_P001	Maize	plastid	56.9	28.38
Zm00001d007548_P001	Maize	plastid	56.65	28.26
Zm00001d007559_P001	Maize	plastid	56.65	28.15
Zm00001d007555_P001	Maize	plastid	56.16	28.01
TraesCS2D01G532600.1	Wheat	plastid	52.22	27.32
TraesCS6D01G017800.1	Wheat	cytosol	35.71	27.0
TraesCS2D01G532300.1	Wheat	plastid	51.72	26.99
Zm00001d007534_P001	Maize	plastid	51.48	26.9
TraesCS1D01G058500.1	Wheat	plastid	37.68	26.84
TraesCS6D01G047700.1	Wheat	mitochondrion	44.83	26.34
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.26	26.11
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	44.83	25.45
KRH39054	Soybean	cytosol	30.3	24.75
KRH39057	Soybean	cytosol	29.8	24.35
KRH39004	Soybean	cytosol	29.56	24.14
KRH39074	Soybean	cytosol	29.56	24.14
KRH39072	Soybean	cytosol	29.31	23.99
KRH40513	Soybean	plastid	20.69	23.93
VIT_12s0028g02320.t01	Wine grape	mitochondrion	27.83	23.69
TraesCS6D01G017700.1	Wheat	plastid	31.03	23.6
Bra027636.1-P	Field mustard	cytosol	18.72	23.46
KRH39112	Soybean	cytosol	28.33	23.14
Solyc06g005220.2.1	Tomato	cytosol	22.91	22.91
Bra027029.1-P	Field mustard	mitochondrion	13.55	22.63
KXG35774	Sorghum	cytosol, mitochondrion	25.62	21.99
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	27.09	21.78
TraesCS1D01G068700.1	Wheat	cytosol	23.4	21.64
Bra036649.1-P	Field mustard	cytosol	20.69	21.48
KRH39066	Soybean	cytosol	29.06	21.26
TraesCS1D01G076700.1	Wheat	cytosol	17.49	21.26
KRH17148	Soybean	mitochondrion	28.08	20.92
KRH08607	Soybean	cytosol	28.82	20.86
KRH09084	Soybean	plastid	26.11	20.74
KRH08639	Soybean	mitochondrion, plastid	28.57	20.53
KRH39050	Soybean	mitochondrion	26.85	20.49
Bra026884.1-P	Field mustard	cytosol	23.15	20.48
KRH08277	Soybean	plastid	28.57	20.46
PGSC0003DMT400052977	Potato	cytosol	19.46	20.31
KRH08636	Soybean	cytosol	26.11	20.31
Bra006187.1-P	Field mustard	plastid	14.53	20.27
KRH25652	Soybean	cytosol, golgi	26.85	20.19
KRH41817	Soybean	mitochondrion	27.59	20.18
VIT_14s0081g00110.t01	Wine grape	cytosol	24.38	20.16
Os04t0351333-00	Rice	cytosol	43.6	20.14
KRH09154	Soybean	mitochondrion	27.34	19.96
KRH08671	Soybean	cytosol, mitochondrion	27.09	19.89
AT1G62914.1	Thale cress	mitochondrion	25.86	19.89
AT5G16640.1	Thale cress	mitochondrion	24.63	19.84
KRH48615	Soybean	mitochondrion	26.6	19.82
KRH08628	Soybean	plastid	26.85	19.75
KRH09121	Soybean	mitochondrion	25.86	19.66
KRH09082	Soybean	cytosol	19.7	19.61
VIT_14s0030g02280.t01	Wine grape	plastid	27.09	19.61
AT1G63330.2	Thale cress	cytosol	26.85	19.5
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.12	19.43
KRH40400	Soybean	plastid	27.34	19.24
PGSC0003DMT400025067	Potato	cytosol	22.17	18.91
PGSC0003DMT400008757	Potato	cytosol	23.15	18.88
Bra026882.1-P	Field mustard	cytosol	24.63	18.73
KRH08625	Soybean	plastid	26.35	18.58
AT1G63400.1	Thale cress	cytosol, plastid	26.35	18.54
AT1G12300.1	Thale cress	mitochondrion	29.06	18.52
AT3G22470.1	Thale cress	cytosol, mitochondrion	28.08	18.42
VIT_14s0081g00120.t01	Wine grape	plastid	26.35	18.35
KRH31646	Soybean	cytosol	23.4	18.34
AT1G12775.1	Thale cress	cytosol, mitochondrion	29.06	18.32
Bra026954.1-P	Field mustard	mitochondrion	29.31	18.31
PGSC0003DMT400025087	Potato	endoplasmic reticulum	22.17	18.18
AT3G16710.1	Thale cress	mitochondrion	22.66	18.15
KRH09095	Soybean	plastid	26.11	18.12
AT1G12620.1	Thale cress	cytosol, mitochondrion	27.59	18.04
Solyc06g007740.1.1	Tomato	cytosol	26.11	17.97
Bra016762.1-P	Field mustard	mitochondrion	26.85	17.96
AT1G62720.1	Thale cress	mitochondrion	21.43	17.94
PGSC0003DMT400025074	Potato	cytosol	24.38	17.93
PGSC0003DMT400053556	Potato	mitochondrion	20.2	17.86
PGSC0003DMT400053185	Potato	mitochondrion	25.86	17.8
AT1G64580.1	Thale cress	mitochondrion	22.91	17.78
AT1G62670.1	Thale cress	mitochondrion	27.59	17.78
AT1G64583.1	Thale cress	mitochondrion	22.41	17.77
KRH09097	Soybean	plastid	25.37	17.67
Bra021192.1-P	Field mustard	plastid	21.92	17.66
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.69	17.61
AT1G06580.1	Thale cress	mitochondrion	21.67	17.6
VIT_14s0081g00270.t01	Wine grape	plastid	25.12	17.59
PGSC0003DMT400008759	Potato	cytosol	13.79	17.55
Bra026971.1-P	Field mustard	mitochondrion	27.09	17.49
AT1G63080.3	Thale cress	mitochondrion	26.35	17.43
Bra028267.1-P	Field mustard	mitochondrion	26.85	17.41
Bra036651.1-P	Field mustard	mitochondrion	22.91	17.38
VIT_14s0081g00280.t01	Wine grape	mitochondrion	27.34	17.37
AT1G62590.1	Thale cress	mitochondrion	27.09	17.35
PGSC0003DMT400056665	Potato	mitochondrion	25.12	17.32
Solyc06g007300.1.1	Tomato	extracellular	25.12	17.23
PGSC0003DMT400056663	Potato	plastid	24.88	17.18
AT1G62930.1	Thale cress	plastid	26.6	17.17
Bra026958.1-P	Field mustard	mitochondrion	26.6	16.95
Bra026957.1-P	Field mustard	mitochondrion	25.12	16.92
AT5G41170.1	Thale cress	mitochondrion	21.92	16.89
PGSC0003DMT400052971	Potato	mitochondrion	24.63	16.86
AT1G62680.2	Thale cress	plastid	22.66	16.79
Bra027658.1-P	Field mustard	cytosol, mitochondrion	22.41	16.76
KRH08599	Soybean	cytosol, plastid	27.59	16.74
AT1G63130.1	Thale cress	mitochondrion	25.86	16.67
AT1G62910.1	Thale cress	mitochondrion	25.86	16.61
AT1G63070.1	Thale cress	mitochondrion	24.14	16.61
Bra031731.1-P	Field mustard	mitochondrion	20.69	16.54
PGSC0003DMT400053182	Potato	cytosol	24.38	16.53
AT1G12700.2	Thale cress	cytosol	25.12	16.5
Bra027026.1-P	Field mustard	mitochondrion	21.18	16.44
AT1G63150.1	Thale cress	mitochondrion	25.37	16.38
Solyc04g080120.1.1	Tomato	extracellular	24.63	16.34
PGSC0003DMT400015293	Potato	mitochondrion	24.38	16.23
PGSC0003DMT400015298	Potato	mitochondrion	24.38	16.23
PGSC0003DMT400008760	Potato	mitochondrion	23.4	16.21
Solyc06g007810.1.1	Tomato	cytosol	10.59	16.04
TraesCS1D01G033000.1	Wheat	cytosol	15.52	15.59
Bra026836.1-P	Field mustard	cytosol, mitochondrion	18.72	15.48
AT4G26800.2	Thale cress	mitochondrion, plastid	19.21	15.18
Bra026401.1-P	Field mustard	plastid	19.46	14.77
AT1G64100.2	Thale cress	cytosol	29.31	14.76
KRH09085	Soybean	mitochondrion	25.37	14.63
KRH12873	Soybean	cytosol	24.88	14.51
VIT_14s0030g02260.t01	Wine grape	cytosol	15.76	14.45
Bra027726.1-P	Field mustard	mitochondrion	16.01	13.8
KRH39064	Soybean	cytosol	30.3	12.69
Bra027656.1-P	Field mustard	cytosol	28.33	12.22
TraesCS1D01G067600.1	Wheat	cytosol	10.34	11.51
Bra016758.1-P	Field mustard	plastid	27.83	9.75
TraesCS1D01G057700.1	Wheat	cytosol	4.93	6.15
TraesCS2D01G532200.1	Wheat	cytosol	1.72	2.39
CDX68679	Canola	cytosol	0.49	1.74

Protein Annotations

EnsemblPlants:TraesCS1D01G058000.1	EnsemblPlantsGene:TraesCS1D01G058000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:38258125..38259345

Molecular Weight (calculated)

45038.2 Da

IEP (calculated)

7.846

GRAVY (calculated)

0.082

Length

406 amino acids

Sequence
(BLAST)

001: MDCCCRARRP DLGLALFGRF LRTGLKTNEI IANTFLKCLC YAKRTNEAIN LLLHRMPELG CVPDAFSYNI VLKSLCENSM SQRALDLLQM VAEGGGACSL
101: NVVAYSTVIH GFFKEGETGK ACNLFHEMIH QGVVPNVVTY SSIIDALCKA REMDKAELVL QQMVDSGAQP NNVTYNCMIH GYSTSGQLKE AAKMFRKMTS
201: HGLVPNAVTC SSLMTSLCKH GRSKEAAEIF YSMTAKGHKP DAVSYRILLH GYATEGCFAD MIDLFNSMES NGFVADCHVF TILIDAYAKR GMMDEAMLIF
301: TEMQEKGVSP NVVTYSTVIA ALCRLGRLAD AMDKFNEMID MGVQPGTTVY HSLIQGFCMH VDLVKAKELV SDMISKGIPR PNIVFLQFSY KLFVQRRTGY
401: GCTRYL

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.