Factsheet for TraesCS1D01G068500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G068900.1	Wheat	mitochondrion	80.79	80.69
TraesCS1D01G068800.1	Wheat	plastid	80.05	79.66
TraesCS1D01G068700.1	Wheat	cytosol	42.86	79.27
TraesCS1D01G068400.1	Wheat	mitochondrion	77.96	76.91
TraesCS1D01G068600.1	Wheat	plastid	31.03	74.12
TraesCS1D01G069100.1	Wheat	mitochondrion	58.13	73.41
TraesCS1D01G058500.1	Wheat	plastid	50.49	71.93
TraesCS1D01G058400.1	Wheat	cytosol	45.57	71.84
TraesCS6D01G290900.1	Wheat	mitochondrion	63.55	70.4
TraesCS1D01G076500.1	Wheat	mitochondrion	57.39	70.18
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	60.22	70.16
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	57.64	69.54
TraesCS1D01G057700.1	Wheat	cytosol	27.83	69.54
TraesCS1D01G057800.1	Wheat	mitochondrion	30.91	69.15
TraesCS1D01G067600.1	Wheat	cytosol	30.91	68.77
TraesCS1D01G076400.1	Wheat	cytosol	30.42	68.04
TraesCS1D01G056200.1	Wheat	mitochondrion	69.09	68.0
TraesCS1D01G058000.1	Wheat	cytosol	33.99	67.98
TraesCS1D01G055300.1	Wheat	cytosol	51.72	67.96
TraesCS1D01G076700.1	Wheat	cytosol	27.59	67.07
TraesCS1D01G056700.1	Wheat	cytosol	50.12	67.05
TraesCS1D01G056600.1	Wheat	mitochondrion	16.26	65.35
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	27.22	64.62
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	17.98	64.04
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	59.61	61.5
TraesCS1D01G076900.1	Wheat	plastid	49.26	60.88
TraesCS1D01G033000.1	Wheat	cytosol	30.17	60.64
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	58.5	59.97
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	46.31	57.06
KXG28799	Sorghum	plastid	53.08	56.71
TraesCS2D01G532400.1	Wheat	cytosol	42.49	56.46
TraesCS2D01G532600.1	Wheat	plastid	53.94	56.44
TraesCS2D01G532500.1	Wheat	plastid	46.67	55.74
TraesCS2D01G532300.1	Wheat	plastid	53.33	55.66
TraesCS2D01G532100.1	Wheat	mitochondrion	47.41	55.64
Zm00001d007534_P001	Maize	plastid	52.96	55.34
TraesCS2D01G532200.1	Wheat	cytosol	19.95	55.29
Zm00001d007531_P001	Maize	plastid	55.42	55.28
Zm00001d007555_P001	Maize	plastid	55.3	55.16
Zm00001d007559_P001	Maize	plastid	55.42	55.08
Zm00001d007548_P001	Maize	plastid	55.17	55.04
TraesCS6D01G083400.1	Wheat	mitochondrion	32.27	53.14
TraesCS6D01G083300.1	Wheat	mitochondrion	29.19	53.14
TraesCS7D01G231400.1	Wheat	cytosol, plastid	25.99	52.36
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.01	51.96
TraesCS6D01G083100.1	Wheat	cytosol	30.91	51.22
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	29.31	49.48
KXG35774	Sorghum	cytosol, mitochondrion	28.82	49.47
TraesCS6D01G017800.1	Wheat	cytosol	32.39	48.98
TraesCS6D01G017700.1	Wheat	plastid	31.03	47.19
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	41.01	46.57
Os04t0349600-01	Rice	plastid	22.04	46.25
Os04t0351333-00	Rice	cytosol	48.65	44.94
TraesCS6D01G076500.1	Wheat	plastid	22.78	40.84
TraesCS6D01G047700.1	Wheat	mitochondrion	34.61	40.67
KRH39054	Soybean	cytosol	20.81	34.0
KRH39074	Soybean	cytosol	20.44	33.4
KRH39004	Soybean	cytosol	20.2	33.0
KRH39057	Soybean	cytosol	20.2	33.0
Solyc06g007280.2.1	Tomato	cytosol	10.22	32.55
KRH39112	Soybean	cytosol	19.7	32.19
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.84	32.08
VIT_14s0081g00110.t01	Wine grape	cytosol	19.34	31.98
KRH39072	Soybean	cytosol	19.34	31.65
Bra027636.1-P	Field mustard	cytosol	12.44	31.17
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.21	30.89
KRH08628	Soybean	plastid	20.94	30.8
KRH08636	Soybean	cytosol	19.7	30.65
VIT_14s0081g00270.t01	Wine grape	plastid	21.67	30.34
KRH09084	Soybean	plastid	19.09	30.33
KRH39066	Soybean	cytosol	20.69	30.27
KRH08671	Soybean	cytosol, mitochondrion	20.57	30.2
VIT_14s0081g00120.t01	Wine grape	plastid	21.67	30.19
KRH08607	Soybean	cytosol	20.81	30.12
KRH17148	Soybean	mitochondrion	20.2	30.09
KRH08639	Soybean	mitochondrion, plastid	20.94	30.09
PGSC0003DMT400052977	Potato	cytosol	14.41	30.08
Solyc06g005220.2.1	Tomato	cytosol	15.02	30.05
Bra026882.1-P	Field mustard	cytosol	19.7	29.96
KRH08625	Soybean	plastid	21.06	29.69
KRH40513	Soybean	plastid	12.81	29.63
KRH48615	Soybean	mitochondrion	19.83	29.54
KRH09154	Soybean	mitochondrion	20.2	29.5
Solyc06g007810.1.1	Tomato	cytosol	9.73	29.48
KRH08277	Soybean	plastid	20.57	29.45
Bra026884.1-P	Field mustard	cytosol	16.63	29.41
KRH39050	Soybean	mitochondrion	19.21	29.32
PGSC0003DMT400008759	Potato	cytosol	11.33	28.84
KRH40400	Soybean	plastid	20.44	28.77
AT1G63330.2	Thale cress	cytosol	19.7	28.62
Bra006187.1-P	Field mustard	plastid	10.22	28.52
Bra036649.1-P	Field mustard	cytosol	13.67	28.39
KRH25652	Soybean	cytosol, golgi	18.84	28.33
PGSC0003DMT400053185	Potato	mitochondrion	20.44	28.14
KRH41817	Soybean	mitochondrion	19.21	28.11
VIT_14s0030g02280.t01	Wine grape	plastid	19.34	27.99
AT1G62930.1	Thale cress	plastid	21.55	27.82
KRH31646	Soybean	cytosol	17.73	27.8
Solyc06g007740.1.1	Tomato	cytosol	20.2	27.8
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.18	27.79
PGSC0003DMT400025074	Potato	cytosol	18.84	27.72
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.8	27.7
Bra027029.1-P	Field mustard	mitochondrion	8.25	27.57
PGSC0003DMT400008757	Potato	cytosol	16.87	27.51
AT1G62670.1	Thale cress	mitochondrion	21.31	27.46
KRH09121	Soybean	mitochondrion	17.98	27.34
AT1G12300.1	Thale cress	mitochondrion	21.43	27.32
Bra036651.1-P	Field mustard	mitochondrion	17.98	27.29
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.61	27.24
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.69	27.05
AT1G63400.1	Thale cress	cytosol, plastid	19.21	27.04
AT1G63080.3	Thale cress	mitochondrion	20.44	27.04
Bra028267.1-P	Field mustard	mitochondrion	20.81	27.0
AT5G16640.1	Thale cress	mitochondrion	16.75	26.98
KRH09082	Soybean	cytosol	13.55	26.96
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.38	26.87
Bra016762.1-P	Field mustard	mitochondrion	20.07	26.85
Bra026958.1-P	Field mustard	mitochondrion	21.06	26.84
AT1G63130.1	Thale cress	mitochondrion	20.81	26.83
PGSC0003DMT400025067	Potato	cytosol	15.64	26.68
PGSC0003DMT400056665	Potato	mitochondrion	19.34	26.66
Bra026954.1-P	Field mustard	mitochondrion	21.31	26.62
AT1G62910.1	Thale cress	mitochondrion	20.69	26.58
Bra026971.1-P	Field mustard	mitochondrion	20.57	26.55
AT1G12700.2	Thale cress	cytosol	20.07	26.38
Solyc06g007300.1.1	Tomato	extracellular	19.21	26.35
AT1G62590.1	Thale cress	mitochondrion	20.57	26.34
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.61	26.34
AT1G63150.1	Thale cress	mitochondrion	20.32	26.23
PGSC0003DMT400056663	Potato	plastid	18.97	26.19
CDX68679	Canola	cytosol	3.69	26.09
Bra027026.1-P	Field mustard	mitochondrion	16.75	26.0
Bra021192.1-P	Field mustard	plastid	16.13	25.99
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.64	25.87
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.15	25.79
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.44	25.78
AT1G62720.1	Thale cress	mitochondrion	15.39	25.77
AT1G63070.1	Thale cress	mitochondrion	18.72	25.76
PGSC0003DMT400053182	Potato	cytosol	18.97	25.71
Solyc04g080120.1.1	Tomato	extracellular	19.34	25.65
PGSC0003DMT400052971	Potato	mitochondrion	18.72	25.63
Bra031731.1-P	Field mustard	mitochondrion	16.01	25.59
KRH09095	Soybean	plastid	18.35	25.47
AT3G16710.1	Thale cress	mitochondrion	15.89	25.44
AT1G64580.1	Thale cress	mitochondrion	16.38	25.43
PGSC0003DMT400008760	Potato	mitochondrion	18.35	25.43
AT5G41170.1	Thale cress	mitochondrion	16.38	25.24
Bra026957.1-P	Field mustard	mitochondrion	18.72	25.21
AT1G62680.2	Thale cress	plastid	17.0	25.18
PGSC0003DMT400015293	Potato	mitochondrion	18.84	25.08
PGSC0003DMT400015298	Potato	mitochondrion	18.84	25.08
AT1G62914.1	Thale cress	mitochondrion	16.26	25.0
AT1G06580.1	Thale cress	mitochondrion	15.27	24.8
KRH09097	Soybean	plastid	17.73	24.7
AT1G64583.1	Thale cress	mitochondrion	15.27	24.22
PGSC0003DMT400053556	Potato	mitochondrion	13.42	23.75
Bra026401.1-P	Field mustard	plastid	15.64	23.74
VIT_14s0030g02260.t01	Wine grape	cytosol	12.93	23.7
AT4G26800.2	Thale cress	mitochondrion, plastid	14.78	23.35
KRH08599	Soybean	cytosol, plastid	19.21	23.32
Bra027726.1-P	Field mustard	mitochondrion	13.3	22.93
AT1G64100.2	Thale cress	cytosol	21.8	21.96
KRH09085	Soybean	mitochondrion	18.47	21.31
Bra027656.1-P	Field mustard	cytosol	23.28	20.09
KRH12873	Soybean	cytosol	16.26	18.97
KRH39064	Soybean	cytosol	22.04	18.47
Bra016758.1-P	Field mustard	plastid	20.69	14.5

Protein Annotations

EnsemblPlants:TraesCS1D01G068500.1	EnsemblPlantsGene:TraesCS1D01G068500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:49973250..49975688

Molecular Weight (calculated)

89424.1 Da

IEP (calculated)

7.933

GRAVY (calculated)

0.032

Length

812 amino acids

Sequence
(BLAST)

001: MSCLHLLRRR TSSFTPTSPP SRSWSPHAAF AAATERVRAG TLTPQDAHHL FDQLLRQSTP VPGQALNGFL AGLARARDTD ACRDGPSLAL TLFNRVCREE
101: AGRRVAPPTI YTYGILMNCC CHVRRPDLGL AYFGRLLRTG LNTNEVVAST LLKCLCCAKR ADEAVNVLLH RTSVLGCVPN SFSYNIVLKS LCDDSRSQQA
201: LGLLQVMAKG DDCSPGVLSY RTLIHGFFKE GEVGKACNLF HEMMRQGVVP DVVTYSSIID ALCKAGAMDK AELFLRQMVD NSVRPDTVTY TSMIHGYSTL
301: GRWKEATKMF REMTSRGLIP NIVTWNSFMA SLCKHGKSKE AAEIFFSMAA RGHKPDIISY TILLHGYANE GSFADMMNLF NSMVGDGIVA NCQVFNILID
401: AYAKQGMMDE AMIILNKMRG QGLSPDVFTY STLVSALCKM GRLADAMGKF SQMIGRGVQP NTVVYHSLVQ GLCTHGVLVK AKELVNEMMN KGMLRPNIAF
501: FNSIMDNLCN EGRVVDAHHI FDLVTDIGEK PDVITFTTLI DGYCLVGEME KACGVLDAMV SAGIEPDVIT YNTLVSGYCK SGRIDDGLNL FREMSHMEVK
601: PTTVTYNIIL DGLFHAGRTV AAKKMLHEMI GSGTPVSMHT YDIFIRGLCR NDCTNEAIAL FQKLGALNVK FDIAILNSMI NAMYKVQRRE EANKLFAAIS
701: TTGLVPNAST YGIMIRNLLK EGSVEEAEDM FSSMEKSDCA LSSRLINDII RMLLEKGEIV KAGEYMSKVD GKSISLEAST SSLLLSLFSG KGKYREQIQL
801: LPAKYQFFDG TI

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.