Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G62670.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G057700.1 | Wheat | cytosol | 55.29 | 49.85 |
| TraesCS1D01G067600.1 | Wheat | cytosol | 52.22 | 41.92 |
| TraesCS1D01G033000.1 | Wheat | cytosol | 54.95 | 39.85 |
| TraesCS2D01G533000.1 | Wheat | cytosol, extracellular | 89.42 | 39.76 |
| TraesCS1D01G076700.1 | Wheat | cytosol | 44.71 | 39.22 |
| TraesCS2D01G532500.1 | Wheat | plastid | 89.08 | 38.38 |
| TraesCS2A01G526200.1 | Wheat | golgi | 87.37 | 37.59 |
| TraesCS2D01G532100.1 | Wheat | mitochondrion | 88.05 | 37.28 |
| TraesCS1D01G068700.1 | Wheat | cytosol | 53.92 | 35.99 |
| TraesCS2D01G532400.1 | Wheat | cytosol | 73.72 | 35.35 |
| TraesCS2D01G532600.1 | Wheat | plastid | 89.42 | 33.76 |
| TraesCS2D01G532300.1 | Wheat | plastid | 88.05 | 33.16 |
| TraesCS1D01G058500.1 | Wheat | plastid | 57.0 | 29.3 |
| TraesCS1D01G056700.1 | Wheat | cytosol | 54.95 | 26.52 |
| TraesCS1D01G058400.1 | Wheat | cytosol | 46.08 | 26.21 |
| TraesCS1D01G076400.1 | Wheat | cytosol | 32.42 | 26.17 |
| CDX68679 | Canola | cytosol | 10.24 | 26.09 |
| TraesCS1D01G055300.1 | Wheat | cytosol | 54.61 | 25.89 |
| TraesCS1D01G076500.1 | Wheat | mitochondrion | 55.97 | 24.7 |
| TraesCS1D01G055500.1 | Wheat | cytosol, mitochondrion | 55.29 | 24.07 |
| TraesCS1D01G058200.1 | Wheat | extracellular, mitochondrion | 55.63 | 23.39 |
| TraesCS1D01G033100.1 | Wheat | mitochondrion, plastid | 56.66 | 21.09 |
| TraesCS6D01G017700.1 | Wheat | plastid | 38.23 | 20.97 |
| TraesCS1D01G032300.1 | Wheat | mitochondrion, plastid | 55.63 | 20.58 |
| TraesCS1D01G068400.1 | Wheat | mitochondrion | 57.0 | 20.29 |
| TraesCS1D01G068500.1 | Wheat | mitochondrion | 55.29 | 19.95 |
| TraesCS6D01G017800.1 | Wheat | cytosol | 36.52 | 19.93 |
| TraesCS1D01G056200.1 | Wheat | mitochondrion | 55.63 | 19.76 |
| TraesCS1D01G068800.1 | Wheat | plastid | 53.58 | 19.24 |
| TraesCS1D01G068900.1 | Wheat | mitochondrion | 53.24 | 19.19 |
| TraesCS7D01G487500.1 | Wheat | cytosol, mitochondrion | 37.88 | 15.52 |
| TraesCS6D01G290900.1 | Wheat | mitochondrion | 37.54 | 15.01 |
| TraesCS1D01G069100.1 | Wheat | mitochondrion | 29.35 | 13.37 |
| TraesCS1D01G076900.1 | Wheat | plastid | 26.96 | 12.02 |
| Solyc06g007810.1.1 | Tomato | cytosol | 10.92 | 11.94 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 13.99 | 9.26 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 15.02 | 8.96 |
| PGSC0003DMT400008759 | Potato | cytosol | 9.56 | 8.78 |
| TraesCS6D01G047700.1 | Wheat | mitochondrion | 20.48 | 8.68 |
| PGSC0003DMT400052977 | Potato | cytosol | 11.26 | 8.48 |
| KRH09082 | Soybean | cytosol | 10.24 | 7.35 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 14.33 | 7.24 |
| Solyc06g005220.2.1 | Tomato | cytosol | 9.56 | 6.9 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 13.65 | 6.86 |
| Bra027636.1-P | Field mustard | cytosol | 7.51 | 6.79 |
| KRH39112 | Soybean | cytosol | 11.26 | 6.64 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 14.33 | 6.57 |
| Bra026884.1-P | Field mustard | cytosol | 10.24 | 6.54 |
| Bra006187.1-P | Field mustard | plastid | 6.48 | 6.53 |
| Bra026836.1-P | Field mustard | cytosol, mitochondrion | 10.92 | 6.52 |
| KRH09084 | Soybean | plastid | 10.92 | 6.26 |
| KRH39057 | Soybean | cytosol | 10.58 | 6.24 |
| Solyc04g080120.1.1 | Tomato | extracellular | 12.97 | 6.21 |
| KRH31646 | Soybean | cytosol | 10.92 | 6.18 |
| KRH08635 | Soybean | cytosol, golgi, mitochondrion, plastid | 10.58 | 6.14 |
| KRH09154 | Soybean | mitochondrion | 11.6 | 6.12 |
| Bra031731.1-P | Field mustard | mitochondrion | 10.58 | 6.1 |
| KRH39004 | Soybean | cytosol | 10.24 | 6.04 |
| KRH39074 | Soybean | cytosol | 10.24 | 6.04 |
| KRH08636 | Soybean | cytosol | 10.58 | 5.94 |
| KRH48615 | Soybean | mitochondrion | 10.92 | 5.87 |
| KRH39072 | Soybean | cytosol | 9.9 | 5.85 |
| PGSC0003DMT400053182 | Potato | cytosol | 11.95 | 5.84 |
| AT1G62680.2 | Thale cress | plastid | 10.92 | 5.84 |
| KRH39054 | Soybean | cytosol | 9.9 | 5.84 |
| PGSC0003DMT400008757 | Potato | cytosol | 9.9 | 5.82 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 11.6 | 5.76 |
| KRH25652 | Soybean | cytosol, golgi | 10.58 | 5.74 |
| KRH17148 | Soybean | mitochondrion | 10.58 | 5.69 |
| PGSC0003DMT400025067 | Potato | cytosol | 9.22 | 5.67 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 9.22 | 5.66 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 9.56 | 5.66 |
| KRH09121 | Soybean | mitochondrion | 10.24 | 5.62 |
| KRH08671 | Soybean | cytosol, mitochondrion | 10.58 | 5.61 |
| Solyc06g007740.1.1 | Tomato | cytosol | 11.26 | 5.59 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 11.6 | 5.57 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 11.6 | 5.57 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 11.26 | 5.56 |
| Bra027658.1-P | Field mustard | cytosol, mitochondrion | 10.24 | 5.52 |
| KRH08628 | Soybean | plastid | 10.24 | 5.43 |
| PGSC0003DMT400025074 | Potato | cytosol | 10.24 | 5.43 |
| Bra026882.1-P | Field mustard | cytosol | 9.9 | 5.43 |
| KRH39066 | Soybean | cytosol | 10.24 | 5.41 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 11.26 | 5.31 |
| Solyc06g007300.1.1 | Tomato | extracellular | 10.58 | 5.24 |
| KRH08625 | Soybean | plastid | 10.24 | 5.21 |
| KRH40400 | Soybean | plastid | 10.24 | 5.2 |
| KRH08607 | Soybean | cytosol | 9.9 | 5.17 |
| KRH09097 | Soybean | plastid | 10.24 | 5.15 |
| KRH08639 | Soybean | mitochondrion, plastid | 9.9 | 5.13 |
| KRH08277 | Soybean | plastid | 9.9 | 5.11 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 10.24 | 5.09 |
| AT1G62930.1 | Thale cress | plastid | 10.92 | 5.09 |
| Bra026971.1-P | Field mustard | mitochondrion | 10.92 | 5.09 |
| AT1G64100.2 | Thale cress | cytosol | 13.99 | 5.09 |
| KRH41817 | Soybean | mitochondrion | 9.56 | 5.05 |
| Bra026958.1-P | Field mustard | mitochondrion | 10.92 | 5.02 |
| KRH09085 | Soybean | mitochondrion | 11.95 | 4.97 |
| KRH09095 | Soybean | plastid | 9.9 | 4.96 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 9.9 | 4.95 |
| KRH08599 | Soybean | cytosol, plastid | 11.26 | 4.93 |
| AT1G63150.1 | Thale cress | mitochondrion | 10.58 | 4.93 |
| AT1G62670.1 | Thale cress | mitochondrion | 10.58 | 4.92 |
| AT1G63130.1 | Thale cress | mitochondrion | 10.58 | 4.92 |
| AT1G63070.1 | Thale cress | mitochondrion | 9.9 | 4.92 |
| AT1G12300.1 | Thale cress | mitochondrion | 10.58 | 4.87 |
| AT1G12700.2 | Thale cress | cytosol | 10.24 | 4.85 |
| Bra028267.1-P | Field mustard | mitochondrion | 10.24 | 4.79 |
| Bra027026.1-P | Field mustard | mitochondrion | 8.53 | 4.78 |
| PGSC0003DMT400056663 | Potato | plastid | 9.56 | 4.76 |
| AT1G64583.1 | Thale cress | mitochondrion | 8.19 | 4.69 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 9.9 | 4.68 |
| Bra036651.1-P | Field mustard | mitochondrion | 8.53 | 4.67 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 10.24 | 4.66 |
| AT1G63330.2 | Thale cress | cytosol | 8.87 | 4.65 |
| Bra026954.1-P | Field mustard | mitochondrion | 10.24 | 4.62 |
| AT1G62910.1 | Thale cress | mitochondrion | 9.9 | 4.59 |
| Bra027656.1-P | Field mustard | cytosol | 14.68 | 4.57 |
| AT1G63080.3 | Thale cress | mitochondrion | 9.56 | 4.56 |
| Bra027726.1-P | Field mustard | mitochondrion | 7.17 | 4.46 |
| Bra016762.1-P | Field mustard | mitochondrion | 9.22 | 4.45 |
| Bra021192.1-P | Field mustard | plastid | 7.51 | 4.37 |
| AT3G16710.1 | Thale cress | mitochondrion | 7.51 | 4.34 |
| Bra026957.1-P | Field mustard | mitochondrion | 8.87 | 4.31 |
| AT1G64580.1 | Thale cress | mitochondrion | 7.51 | 4.21 |
| KRH00678 | Soybean | endoplasmic reticulum, extracellular, plastid | 7.51 | 4.19 |
| AT1G62590.1 | Thale cress | mitochondrion | 8.87 | 4.1 |
| AT5G16640.1 | Thale cress | mitochondrion | 6.83 | 3.97 |
| KRH39050 | Soybean | mitochondrion | 7.17 | 3.95 |
| Bra036649.1-P | Field mustard | cytosol | 5.12 | 3.84 |
| Bra026401.1-P | Field mustard | plastid | 6.83 | 3.74 |
| KRH39064 | Soybean | cytosol | 11.95 | 3.61 |
| KRH12873 | Soybean | cytosol | 8.53 | 3.59 |
| Bra025516.1-P | Field mustard | cytosol, mitochondrion | 5.8 | 3.56 |
| AT1G62720.1 | Thale cress | mitochondrion | 5.8 | 3.51 |
| AT5G41170.1 | Thale cress | mitochondrion | 6.14 | 3.42 |
| AT1G06580.1 | Thale cress | mitochondrion | 5.8 | 3.4 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 6.48 | 3.39 |
| AT1G63400.1 | Thale cress | cytosol, plastid | 6.48 | 3.29 |
| AT4G26800.2 | Thale cress | mitochondrion, plastid | 5.46 | 3.11 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 4.1 | 2.61 |
| Bra016758.1-P | Field mustard | plastid | 9.9 | 2.5 |
| TraesCS1D01G058000.1 | Wheat | cytosol | 2.39 | 1.72 |
| KRH40513 | Soybean | plastid | 2.05 | 1.71 |
| AT1G62914.1 | Thale cress | mitochondrion | 2.39 | 1.33 |
| Bra027029.1-P | Field mustard | mitochondrion | 1.02 | 1.23 |
| TraesCS1D01G075800.1 | Wheat | mitochondrion, plastid | 1.37 | 1.17 |
| TraesCS2B01G560000.1 | Wheat | mitochondrion, plastid | 1.37 | 0.91 |
| TraesCS6D01G089500.1 | Wheat | cytosol, mitochondrion, plastid | 1.37 | 0.83 |
| TraesCS6D01G076500.1 | Wheat | plastid | 0.68 | 0.44 |
| Solyc06g007280.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| TraesCS1D01G056600.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS1D01G057800.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS1D01G068600.1 | Wheat | plastid | 0.0 | 0.0 |
| TraesCS1D01G076800.1 | Wheat | cytosol, mitochondrion | 0.0 | 0.0 |
| TraesCS6D01G083100.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS6D01G083300.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS6D01G083400.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS7D01G231400.1 | Wheat | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G532200.1 | EnsemblPlantsGene:TraesCS2D01G532200 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF874 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr2D:+:617547874..617548755
Molecular Weight (calculated)
32389.3 Da
IEP (calculated)
9.099
GRAVY (calculated)
0.254
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDFIVGIGQ RPDVIMYNSL MDGYCLVGKV EEALRVLDAM KSAGLQPDAF TYGILLNGYC KIGRIAAGLS LFMEMSLSRV KPTTIMYNII LDGLFRSGRT
101: VSAKEKFRTM SESGIPVGID TYNIVLNGLC KNNCTDEAIE LFKKLRATNV KIDVITFSTM ISAMFKTRRI EEAKDLFATI SAIGLVPSVV TYSLMMTNFI
201: KEGLLADADD MFLAMEKAGC APDSRLLNQV VRVFLKNGEV VKAVTYLAKL DAKQLSVEAS TISLIVSLFS RKGKLREHVK LLPVKYQPPE MLG
101: VSAKEKFRTM SESGIPVGID TYNIVLNGLC KNNCTDEAIE LFKKLRATNV KIDVITFSTM ISAMFKTRRI EEAKDLFATI SAIGLVPSVV TYSLMMTNFI
201: KEGLLADADD MFLAMEKAGC APDSRLLNQV VRVFLKNGEV VKAVTYLAKL DAKQLSVEAS TISLIVSLFS RKGKLREHVK LLPVKYQPPE MLG
001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.