Factsheet for TraesCS6D01G076500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G014310.1	Barley	mitochondrion	80.79	53.28
Os10t0497432-01	Rice	mitochondrion	30.91	52.63
Os08t0248400-01	Rice	mitochondrion	48.79	50.23
Zm00001d018982_P001	Maize	mitochondrion	37.97	49.14
Os10t0495100-01	Rice	cytosol, mitochondrion	49.23	48.37
Os08t0107700-01	Rice	cytosol, mitochondrion	39.74	48.13
TraesCS6D01G047700.1	Wheat	mitochondrion	69.98	45.88
Os10t0499500-01	Rice	mitochondrion	49.01	43.87
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	68.21	43.22
TraesCS7D01G231400.1	Wheat	cytosol, plastid	36.2	40.69
Os10t0497366-00	Rice	mitochondrion	35.76	40.4
TraesCS1D01G057800.1	Wheat	mitochondrion	31.57	39.39
OQU88594	Sorghum	cytosol	44.37	38.51
TraesCS1D01G058000.1	Wheat	cytosol	34.0	37.93
TraesCS6D01G083300.1	Wheat	mitochondrion	37.31	37.89
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	28.04	37.13
TraesCS6D01G083100.1	Wheat	cytosol	39.74	36.73
TraesCS1D01G068600.1	Wheat	plastid	27.37	36.47
TraesCS6A01G083000.1	Wheat	cytosol	36.64	36.4
TraesCS6D01G083400.1	Wheat	mitochondrion	39.29	36.11
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	37.75	35.55
EER95949	Sorghum	mitochondrion	51.21	34.99
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	17.44	34.65
Solyc06g007280.2.1	Tomato	cytosol	18.76	33.33
TraesCS6D01G017800.1	Wheat	cytosol	39.07	32.96
TraesCS1D01G056600.1	Wheat	mitochondrion	14.57	32.67
Os08t0107800-01	Rice	mitochondrion	43.05	31.25
KXG34536	Sorghum	mitochondrion	37.09	29.37
TraesCS6D01G017700.1	Wheat	plastid	34.0	28.84
Os10t0495200-01	Rice	mitochondrion	49.45	28.64
Os10t0497300-01	Rice	mitochondrion	50.11	28.59
Os10t0501700-00	Rice	cytosol	27.59	27.53
Zm00001d009733_P001	Maize	cytosol	47.46	27.04
TraesCS6B01G114300.1	Wheat	cytosol	22.74	26.48
TraesCS6D01G290900.1	Wheat	mitochondrion	40.62	25.1
Os08t0110200-01	Rice	mitochondrion	44.15	25.06
KRH40513	Soybean	plastid	18.54	23.93
TraesCS2D01G532400.1	Wheat	cytosol	31.57	23.4
TraesCS1D01G076900.1	Wheat	plastid	33.77	23.29
TraesCS2D01G532300.1	Wheat	plastid	39.74	23.14
TraesCS1D01G056200.1	Wheat	mitochondrion	41.94	23.03
TraesCS1D01G068900.1	Wheat	mitochondrion	41.28	23.0
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.06	22.85
Zm00001d009735_P001	Maize	cytosol	49.01	22.82
TraesCS1D01G068500.1	Wheat	mitochondrion	40.84	22.78
TraesCS1D01G076500.1	Wheat	mitochondrion	33.33	22.74
TraesCS2D01G532600.1	Wheat	plastid	38.85	22.68
TraesCS1D01G068800.1	Wheat	plastid	40.84	22.67
TraesCS1D01G069100.1	Wheat	mitochondrion	32.01	22.55
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	39.07	22.49
TraesCS1D01G068400.1	Wheat	mitochondrion	40.84	22.48
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	34.44	22.38
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	38.85	22.22
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	32.23	22.15
TraesCS1D01G076400.1	Wheat	cytosol	17.66	22.04
AT1G62914.1	Thale cress	mitochondrion	25.39	21.78
TraesCS2D01G532100.1	Wheat	mitochondrion	32.23	21.1
TraesCS2D01G532500.1	Wheat	plastid	31.35	20.88
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	23.84	20.57
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	30.46	20.51
KRH09084	Soybean	plastid	22.96	20.35
TraesCS1D01G055300.1	Wheat	cytosol	27.59	20.23
KRH41817	Soybean	mitochondrion	24.72	20.18
KRH39054	Soybean	cytosol	22.08	20.12
KRH39057	Soybean	cytosol	22.08	20.12
KRH39004	Soybean	cytosol	21.85	19.92
TraesCS1D01G058400.1	Wheat	cytosol	22.52	19.81
KRH39072	Soybean	cytosol	21.63	19.76
AT1G63400.1	Thale cress	cytosol, plastid	25.17	19.76
KRH39050	Soybean	mitochondrion	23.18	19.74
Bra036649.1-P	Field mustard	cytosol	17.0	19.69
Solyc06g007740.1.1	Tomato	cytosol	25.39	19.49
KRH39074	Soybean	cytosol	21.19	19.32
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.41	19.21
KRH31646	Soybean	cytosol	21.85	19.11
VIT_14s0030g02280.t01	Wine grape	plastid	23.62	19.07
Solyc06g005220.2.1	Tomato	cytosol	17.0	18.97
AT1G63330.2	Thale cress	cytosol	23.4	18.96
KRH39112	Soybean	cytosol	20.75	18.91
VIT_14s0081g00120.t01	Wine grape	plastid	24.06	18.7
PGSC0003DMT400008757	Potato	cytosol	20.53	18.67
TraesCS1D01G056700.1	Wheat	cytosol	24.94	18.62
KRH08639	Soybean	mitochondrion, plastid	23.18	18.58
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.39	18.58
AT1G62670.1	Thale cress	mitochondrion	25.83	18.57
AT1G63130.1	Thale cress	mitochondrion	25.83	18.57
KRH09121	Soybean	mitochondrion	21.85	18.54
KRH08607	Soybean	cytosol	22.96	18.54
KRH17148	Soybean	mitochondrion	22.3	18.53
AT1G63070.1	Thale cress	mitochondrion	24.06	18.47
AT1G62930.1	Thale cress	plastid	25.61	18.44
Bra026971.1-P	Field mustard	mitochondrion	25.61	18.44
KRH08636	Soybean	cytosol	21.19	18.39
AT1G62910.1	Thale cress	mitochondrion	25.61	18.35
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.83	18.31
PGSC0003DMT400053556	Potato	mitochondrion	18.54	18.3
KRH08628	Soybean	plastid	22.3	18.3
PGSC0003DMT400025074	Potato	cytosol	22.3	18.3
VIT_14s0081g00270.t01	Wine grape	plastid	23.4	18.28
AT5G16640.1	Thale cress	mitochondrion	20.31	18.25
AT1G63080.3	Thale cress	mitochondrion	24.72	18.24
PGSC0003DMT400056665	Potato	mitochondrion	23.62	18.17
KRH08277	Soybean	plastid	22.74	18.17
PGSC0003DMT400053185	Potato	mitochondrion	23.62	18.14
Solyc06g007300.1.1	Tomato	extracellular	23.62	18.07
KRH40400	Soybean	plastid	22.96	18.02
KRH48615	Soybean	mitochondrion	21.63	17.98
KRH09095	Soybean	plastid	23.18	17.95
Bra026958.1-P	Field mustard	mitochondrion	25.17	17.9
TraesCS1D01G058500.1	Wheat	plastid	22.52	17.89
AT1G12620.1	Thale cress	cytosol, mitochondrion	24.5	17.87
AT1G63150.1	Thale cress	mitochondrion	24.72	17.81
KRH09154	Soybean	mitochondrion	21.85	17.81
AT1G06580.1	Thale cress	mitochondrion	19.65	17.8
AT1G64580.1	Thale cress	mitochondrion	20.53	17.78
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.43	17.78
KRH08671	Soybean	cytosol, mitochondrion	21.63	17.72
PGSC0003DMT400056663	Potato	plastid	22.96	17.69
KRH09097	Soybean	plastid	22.74	17.67
KRH39066	Soybean	cytosol	21.63	17.66
Bra026882.1-P	Field mustard	cytosol	20.75	17.6
AT1G12300.1	Thale cress	mitochondrion	24.72	17.58
VIT_14s0081g00110.t01	Wine grape	cytosol	18.98	17.52
Bra028267.1-P	Field mustard	mitochondrion	24.06	17.41
PGSC0003DMT400008760	Potato	mitochondrion	22.52	17.41
PGSC0003DMT400015293	Potato	mitochondrion	23.4	17.38
PGSC0003DMT400015298	Potato	mitochondrion	23.4	17.38
KRH08625	Soybean	plastid	22.08	17.36
AT1G62590.1	Thale cress	mitochondrion	24.28	17.35
Solyc04g080120.1.1	Tomato	extracellular	23.18	17.16
Bra031731.1-P	Field mustard	mitochondrion	19.21	17.13
AT1G62720.1	Thale cress	mitochondrion	18.32	17.11
Bra021192.1-P	Field mustard	plastid	18.98	17.06
Bra016762.1-P	Field mustard	mitochondrion	22.74	16.97
Bra036651.1-P	Field mustard	mitochondrion	19.87	16.82
PGSC0003DMT400025067	Potato	cytosol	17.66	16.81
KRH25652	Soybean	cytosol, golgi	19.87	16.67
Bra026954.1-P	Field mustard	mitochondrion	23.84	16.62
AT1G64583.1	Thale cress	mitochondrion	18.76	16.6
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.87	16.57
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.44	16.56
PGSC0003DMT400053182	Potato	cytosol	21.85	16.53
PGSC0003DMT400052971	Potato	mitochondrion	21.63	16.53
Bra027029.1-P	Field mustard	mitochondrion	8.83	16.46
Bra027026.1-P	Field mustard	mitochondrion	18.98	16.44
AT3G16710.1	Thale cress	mitochondrion	18.32	16.37
Bra026884.1-P	Field mustard	cytosol	16.56	16.34
AT5G41170.1	Thale cress	mitochondrion	18.98	16.32
AT1G12775.1	Thale cress	cytosol, mitochondrion	23.18	16.3
AT4G26800.2	Thale cress	mitochondrion, plastid	17.88	15.76
PGSC0003DMT400052977	Potato	cytosol	13.47	15.68
AT1G12700.2	Thale cress	cytosol	21.19	15.53
Bra026957.1-P	Field mustard	mitochondrion	20.53	15.42
AT1G62680.2	Thale cress	plastid	18.54	15.33
KRH08599	Soybean	cytosol, plastid	22.52	15.25
Bra027636.1-P	Field mustard	cytosol	10.82	15.12
KRH09082	Soybean	cytosol	13.47	14.95
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.67	14.46
KRH09085	Soybean	mitochondrion	21.41	13.78
AT1G64100.2	Thale cress	cytosol	24.5	13.77
Bra026401.1-P	Field mustard	plastid	16.11	13.64
Bra027726.1-P	Field mustard	mitochondrion	13.69	13.16
Bra027656.1-P	Field mustard	cytosol	26.71	12.86
KRH12873	Soybean	cytosol	19.21	12.5
Bra006187.1-P	Field mustard	plastid	7.73	12.03
PGSC0003DMT400008759	Potato	cytosol	8.17	11.6
OQU88581	Sorghum	cytosol	27.37	11.41
KRH39064	Soybean	cytosol	23.18	10.84
Bra016758.1-P	Field mustard	plastid	23.84	9.32
Solyc06g007810.1.1	Tomato	cytosol	5.08	8.58
VIT_14s0030g02260.t01	Wine grape	cytosol	7.95	8.13
TraesCS1D01G068700.1	Wheat	cytosol	6.62	6.83
TraesCS1D01G033000.1	Wheat	cytosol	3.31	3.71
TraesCS1D01G076700.1	Wheat	cytosol	1.77	2.4
CDX68679	Canola	cytosol	0.22	0.87
TraesCS2D01G532200.1	Wheat	cytosol	0.44	0.68
TraesCS1D01G057700.1	Wheat	cytosol	0.44	0.62
TraesCS1D01G067600.1	Wheat	cytosol	0.44	0.55

Protein Annotations

EnsemblPlants:TraesCS6D01G076500.1	EnsemblPlantsGene:TraesCS6D01G076500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:41233814..41235258

Molecular Weight (calculated)

50646.7 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.056

Length

453 amino acids

Sequence
(BLAST)

001: MSVSTSSRRL MVQAQAASGG ERRQRRRRRP LLLRDSGQVG AMSRRMVRRV LERNIEERYR AGHIGTEDAL HLFDELLQVA GPSSTRAINC LLYVVGRDCP
101: ALGVSLFNRV ARAKVPPHNV TYSILIGCCC HAGRLDLGFA AMGNIIKLGF AAEAMFSFSH LLRAVCAENK TSYAMDIALR RMPEFNCTPN VFSYSILLKG
201: LCVEKRSQEA LELIHMMVDA GGSCQPNVVS YSTVVDGLLK EGEVNKAYSL LCEMLHQGIS PNVVTYSSII FSMCKVQAMD KAEEVLQQMF DTGILPNITT
301: YNSLIHGYYS SGQCEEVVRI FKKMSRNGVQ PDIATYNIQM DYLCKSRRFA EARTIFDSMA GKDQKPNVTS CSILLHAYAM EQSFHDMHCL IELMVENGIA
401: PDHSVYNILI VVYAKGKMVD EVMHIFTKMR QQGLNPNAAN YGTVINLQYW PNG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.