CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95949	Sorghum	mitochondrion	79.31	62.44
KXG34536	Sorghum	mitochondrion	63.79	58.22
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	26.05	53.75
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	32.18	51.69
TraesCSU01G089800.1	Wheat	mitochondrion	34.67	51.57
TraesCSU01G089700.1	Wheat	mitochondrion	45.98	49.79
TraesCSU01G090200.1	Wheat	cytosol	41.57	49.09
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	34.29	47.23
OQU82832	Sorghum	cytosol	25.86	47.2
HORVU1Hr1G018190.2	Barley	cytosol	25.48	46.67
TraesCS6A01G015000.1	Wheat	mitochondrion	35.63	44.82
TraesCS6D01G076500.1	Wheat	plastid	38.51	44.37
TraesCS6D01G047700.1	Wheat	mitochondrion	51.92	39.22
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	52.87	38.6
HORVU6Hr1G014310.1	Barley	mitochondrion	50.77	38.57
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	51.92	37.96
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	51.72	37.76
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	51.34	37.48
TraesCS6B01G021600.1	Wheat	mitochondrion	51.34	37.43
TraesCS6D01G017800.1	Wheat	cytosol	35.25	34.26
OQU82856	Sorghum	cytosol	47.7	33.11
HORVU6Hr1G002890.6	Barley	cytosol, plastid	49.43	32.45
OQU82836	Sorghum	cytosol	37.93	32.35
KXG27690	Sorghum	cytosol, plastid	44.83	32.01
EES07882	Sorghum	cytosol	47.13	31.66
OQU82823	Sorghum	cytosol	48.28	31.62
OQU82827	Sorghum	cytosol	48.28	31.62
TraesCS6A01G083000.1	Wheat	cytosol	27.01	30.92
EES09203	Sorghum	cytosol	45.79	29.95
OQU80148	Sorghum	mitochondrion	41.38	29.71
KRH40513	Soybean	plastid	19.92	29.63
TraesCS6D01G017700.1	Wheat	plastid	30.27	29.59
OQU82831	Sorghum	cytosol	32.76	27.9
Solyc06g007280.2.1	Tomato	cytosol	13.6	27.84
KXG28799	Sorghum	plastid	40.42	27.76
KXG19780	Sorghum	cytosol	29.89	26.4
VIT_12s0028g02320.t01	Wine grape	mitochondrion	23.75	26.0
TraesCS6B01G114300.1	Wheat	cytosol	19.35	25.96
OQU82834	Sorghum	cytosol	47.32	25.65
KRH39054	Soybean	cytosol	23.95	25.15
KRH39057	Soybean	cytosol	23.95	25.15
TraesCS6A01G014600.1	Wheat	cytosol	18.97	25.06
Bra027636.1-P	Field mustard	cytosol	15.52	25.0
KRH39004	Soybean	cytosol	23.56	24.75
Bra027029.1-P	Field mustard	mitochondrion	11.49	24.69
KRH39072	Soybean	cytosol	23.37	24.6
KRH39074	Soybean	cytosol	23.37	24.55
AT1G63330.2	Thale cress	cytosol	26.05	24.33
Bra036649.1-P	Field mustard	cytosol	18.2	24.3
OQU88581	Sorghum	cytosol	50.57	24.29
KRH39050	Soybean	mitochondrion	24.71	24.25
AT1G62914.1	Thale cress	mitochondrion	24.52	24.24
AT1G63400.1	Thale cress	cytosol, plastid	26.44	23.92
Bra025516.1-P	Field mustard	cytosol, mitochondrion	21.84	23.9
AT1G64583.1	Thale cress	mitochondrion	23.37	23.83
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	22.99	23.76
KRH08636	Soybean	cytosol	23.56	23.56
KXG35774	Sorghum	cytosol, mitochondrion	21.26	23.47
AT1G62930.1	Thale cress	plastid	28.16	23.37
KRH08671	Soybean	cytosol, mitochondrion	24.71	23.33
KRH09084	Soybean	plastid	22.8	23.29
KRH41817	Soybean	mitochondrion	24.71	23.24
VIT_14s0030g02280.t01	Wine grape	plastid	24.9	23.17
KRH39112	Soybean	cytosol	22.03	23.14
AT3G16710.1	Thale cress	mitochondrion	22.41	23.08
KRH39066	Soybean	cytosol	24.52	23.06
AT1G12620.1	Thale cress	cytosol, mitochondrion	27.39	23.03
AT1G63080.3	Thale cress	mitochondrion	27.01	22.96
KRH17148	Soybean	mitochondrion	23.95	22.94
AT1G63070.1	Thale cress	mitochondrion	25.86	22.88
AT1G12300.1	Thale cress	mitochondrion	27.78	22.76
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	22.8	22.67
AT5G16640.1	Thale cress	mitochondrion	21.84	22.62
AT1G06580.1	Thale cress	mitochondrion	21.65	22.6
KRH25652	Soybean	cytosol, golgi	23.37	22.59
KRH08277	Soybean	plastid	24.52	22.57
PGSC0003DMT400008757	Potato	cytosol	21.46	22.49
AT1G62910.1	Thale cress	mitochondrion	27.2	22.47
Bra021192.1-P	Field mustard	plastid	21.65	22.42
KRH48615	Soybean	mitochondrion	23.37	22.39
AT1G63130.1	Thale cress	mitochondrion	27.01	22.38
AT1G64580.1	Thale cress	mitochondrion	22.41	22.37
KRH40400	Soybean	plastid	24.71	22.36
AT3G22470.1	Thale cress	cytosol, mitochondrion	26.44	22.29
Bra026882.1-P	Field mustard	cytosol	22.8	22.28
AT1G62670.1	Thale cress	mitochondrion	26.82	22.22
Bra026884.1-P	Field mustard	cytosol	19.54	22.22
Solyc06g005220.2.1	Tomato	cytosol	17.24	22.17
AT1G62720.1	Thale cress	mitochondrion	20.5	22.06
KRH08625	Soybean	plastid	24.33	22.05
Bra028267.1-P	Field mustard	mitochondrion	26.44	22.04
KRH08607	Soybean	cytosol	23.56	21.93
AT1G62590.1	Thale cress	mitochondrion	26.63	21.92
KRH08628	Soybean	plastid	23.18	21.92
Bra036651.1-P	Field mustard	mitochondrion	22.41	21.87
KRH08639	Soybean	mitochondrion, plastid	23.56	21.77
AT1G63150.1	Thale cress	mitochondrion	26.05	21.62
VIT_14s0081g00120.t01	Wine grape	plastid	23.95	21.44
Bra016762.1-P	Field mustard	mitochondrion	24.9	21.42
KRH09154	Soybean	mitochondrion	22.8	21.4
VIT_14s0081g00270.t01	Wine grape	plastid	23.75	21.38
Bra026971.1-P	Field mustard	mitochondrion	25.67	21.3
AT1G12775.1	Thale cress	cytosol, mitochondrion	26.25	21.27
AT5G41170.1	Thale cress	mitochondrion	21.46	21.25
Bra026958.1-P	Field mustard	mitochondrion	25.86	21.19
KRH31646	Soybean	cytosol	20.88	21.04
KRH09121	Soybean	mitochondrion	21.46	20.97
Bra006187.1-P	Field mustard	plastid	11.69	20.96
Bra026954.1-P	Field mustard	mitochondrion	26.05	20.92
Solyc04g080120.1.1	Tomato	extracellular	24.52	20.91
Solyc06g007740.1.1	Tomato	cytosol	23.56	20.85
PGSC0003DMT400015293	Potato	mitochondrion	24.33	20.82
PGSC0003DMT400015298	Potato	mitochondrion	24.33	20.82
VIT_14s0081g00110.t01	Wine grape	cytosol	19.54	20.77
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.46	20.63
Bra031731.1-P	Field mustard	mitochondrion	19.92	20.47
PGSC0003DMT400025074	Potato	cytosol	21.65	20.47
Bra027026.1-P	Field mustard	mitochondrion	20.5	20.46
AT4G26800.2	Thale cress	mitochondrion, plastid	20.11	20.43
PGSC0003DMT400053556	Potato	mitochondrion	17.82	20.26
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.16	20.2
KRH09082	Soybean	cytosol	15.71	20.1
PGSC0003DMT400056665	Potato	mitochondrion	22.61	20.03
AT1G62680.2	Thale cress	plastid	20.88	19.89
PGSC0003DMT400008760	Potato	mitochondrion	22.22	19.8
Solyc06g007300.1.1	Tomato	extracellular	22.41	19.76
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.14	19.72
PGSC0003DMT400025067	Potato	cytosol	17.82	19.54
PGSC0003DMT400052977	Potato	cytosol	14.56	19.54
Bra027726.1-P	Field mustard	mitochondrion	17.43	19.32
PGSC0003DMT400056663	Potato	plastid	21.65	19.22
PGSC0003DMT400053185	Potato	mitochondrion	21.65	19.15
Bra026957.1-P	Field mustard	mitochondrion	22.03	19.07
KRH09097	Soybean	plastid	21.26	19.04
KRH09095	Soybean	plastid	21.26	18.97
OQU82833	Sorghum	cytosol	16.09	18.75
PGSC0003DMT400052971	Potato	mitochondrion	21.26	18.72
AT1G12700.2	Thale cress	cytosol	22.03	18.61
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.43	18.53
PGSC0003DMT400008759	Potato	cytosol	11.3	18.5
KRH08599	Soybean	cytosol, plastid	23.56	18.39
PGSC0003DMT400053182	Potato	cytosol	20.69	18.03
Bra026401.1-P	Field mustard	plastid	17.82	17.38
Solyc06g007810.1.1	Tomato	cytosol	8.43	16.42
AT1G64100.2	Thale cress	cytosol	24.9	16.13
KRH09085	Soybean	mitochondrion	21.46	15.91
Bra027656.1-P	Field mustard	cytosol	27.97	15.52
KRH12873	Soybean	cytosol	19.16	14.37
VIT_14s0030g02260.t01	Wine grape	cytosol	11.69	13.77
KRH39064	Soybean	cytosol	23.75	12.8
Bra016758.1-P	Field mustard	plastid	25.86	11.65
CDX68679	Canola	cytosol	2.3	10.43

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1W0W2H8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU88594
ProteinID:OQU88594	ProteinID:OQU88594.1	PFAM:PF12854	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G059700	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0009DC939B	:	:

Description

hypothetical protein

Coordinates

chr2:-:5733343..5735193

Molecular Weight (calculated)

58038.8 Da

IEP (calculated)

6.499

GRAVY (calculated)

-0.004

Length

522 amino acids

Sequence
(BLAST)

001: RPVRQRGRRY ENRPSCELER FIGECFRSGD LDPEDALDLF DELLPQARQG SVYALTRLLT TVARAPVSSA VPNGPALAVS MFNRMARAGS KKVAPTTVTY
101: TILISCCCYV GCLNLAFAAL GQIIKTGLRA NAISFTPILR TLCAEKRTSD AMNIVIRWTP KLGCTPDVFS YTVLLKGLCD EKKCEEAVDL IHMMAEDGDH
201: CPPNVVSYTT VIHGFFKEDE VGKAYTLFCE MLDRGIPPDV VTCNSIIDGL CKVQAMDKAE EVLRQMFDKH IMPDCTTYNS LVHGYLSSGQ LKEAVRILKQ
301: MSRHGQPPNG VTYSMLIDCL CKFGGHTEAR EILNSMIQSR GNPNVATYGG LLHGLDEAML TFNKMRQQGL MPDIISYGTM IDGLCKIGRL DAAMSQFCQM
401: IDDGLSPDIV VFTNLIHGFS MYGKWEKAEE LFYEMMDRGI RPTVVVFTTM IDKLFKEGKV TEAKTLFDLM PIASVKPNVV SYNAIIHGYF LADGRIEDVL
501: TLFREMLSKA AKTDTVTENI IS

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.