Factsheet for TraesCS6B01G114300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G083000.1	Wheat	cytosol	95.89	81.8
HORVU6Hr1G014310.1	Barley	mitochondrion	90.49	51.24
Os10t0501700-00	Rice	cytosol	40.36	34.58
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	60.67	33.01
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	60.15	32.73
TraesCS1B01G084800.1	Wheat	cytosol	38.82	32.54
TraesCS6B01G021600.1	Wheat	mitochondrion	59.38	32.26
Os10t0497366-00	Rice	mitochondrion	30.33	29.43
TraesCS6B01G341800.2	Wheat	cytosol	29.56	28.82
TraesCS2B01G126900.1	Wheat	cytosol	28.28	28.8
TraesCS2B01G560300.1	Wheat	cytosol	40.1	27.42
TraesCS1B01G075300.1	Wheat	cytosol	41.39	26.97
TraesCS2B01G559900.1	Wheat	cytosol	37.53	26.94
TraesCS1B01G038600.1	Wheat	cytosol	24.42	26.17
TraesCS1B01G039700.1	Wheat	cytosol	40.62	25.99
TraesCS1B01G073100.1	Wheat	cytosol	40.36	25.91
TraesCS1B01G038400.1	Wheat	cytosol	40.36	25.82
TraesCS1B01G072700.1	Wheat	cytosol	33.68	25.69
Solyc06g007810.1.1	Tomato	cytosol	17.22	25.0
TraesCS7B01G469500.1	Wheat	cytosol	35.22	24.38
TraesCS1B01G085400.1	Wheat	cytosol	40.1	24.34
KXG34536	Sorghum	mitochondrion	35.73	24.3
TraesCS1B01G072400.1	Wheat	cytosol	42.93	24.03
Zm00001d009733_P001	Maize	cytosol	48.59	23.77
PGSC0003DMT400008759	Potato	cytosol	19.28	23.51
CDX68679	Canola	cytosol	6.94	23.48
Os10t0497300-01	Rice	mitochondrion	47.81	23.43
Os10t0495200-01	Rice	mitochondrion	46.53	23.15
Os08t0107800-01	Rice	mitochondrion	36.5	22.76
TraesCS6D01G076500.1	Wheat	plastid	26.48	22.74
Bra006187.1-P	Field mustard	plastid	16.71	22.34
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	37.53	21.99
EER95949	Sorghum	mitochondrion	37.28	21.87
Bra027029.1-P	Field mustard	mitochondrion	13.62	21.81
TraesCS6B01G127200.1	Wheat	cytosol	18.77	21.22
TraesCS1B01G038200.1	Wheat	mitochondrion	34.45	21.17
Os08t0110200-01	Rice	mitochondrion	42.67	20.8
TraesCS1B01G038500.1	Wheat	mitochondrion	40.87	20.13
Bra027636.1-P	Field mustard	cytosol	16.71	20.06
Os10t0495100-01	Rice	cytosol, mitochondrion	23.65	19.96
TraesCS1B01G085300.1	Wheat	mitochondrion	40.62	19.95
TraesCS1B01G039100.1	Wheat	mitochondrion	40.1	19.92
TraesCS1B01G092500.1	Wheat	mitochondrion	40.1	19.92
TraesCS1B01G085900.1	Wheat	mitochondrion	41.65	19.9
TraesCS1B01G039200.1	Wheat	mitochondrion	40.1	19.9
PGSC0003DMT400052977	Potato	cytosol	19.79	19.79
TraesCS2B01G560700.1	Wheat	plastid	39.07	19.71
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	39.33	19.62
OQU88594	Sorghum	cytosol	25.96	19.35
Zm00001d009735_P001	Maize	cytosol	48.07	19.22
TraesCS1B01G072900.2	Wheat	mitochondrion	41.9	18.67
TraesCS1B01G086000.1	Wheat	plastid	32.9	18.66
VIT_14s0030g02260.t01	Wine grape	cytosol	20.57	18.06
Solyc06g005220.2.1	Tomato	cytosol	18.77	17.98
TraesCS1B01G071600.1	Wheat	mitochondrion	39.07	17.92
TraesCS1B01G092600.1	Wheat	plastid	23.65	17.8
TraesCS1B01G038300.1	Wheat	plastid	24.94	17.77
KRH09082	Soybean	cytosol	17.22	16.42
Bra036649.1-P	Field mustard	cytosol	16.45	16.37
Os10t0499500-01	Rice	mitochondrion	21.08	16.21
Bra026884.1-P	Field mustard	cytosol	19.02	16.12
VIT_14s0081g00110.t01	Wine grape	cytosol	20.31	16.09
Zm00001d018982_P001	Maize	mitochondrion	14.14	15.71
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	17.48	15.49
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.05	15.45
TraesCS6B01G127500.1	Wheat	cytosol	19.28	15.31
Bra026836.1-P	Field mustard	cytosol, mitochondrion	19.28	15.27
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.51	15.09
OQU88581	Sorghum	cytosol	41.9	15.0
KRH39054	Soybean	cytosol	19.02	14.89
KRH39057	Soybean	cytosol	19.02	14.89
KRH39112	Soybean	cytosol	19.02	14.89
KRH31646	Soybean	cytosol	19.79	14.86
TraesCS1B01G073200.1	Wheat	cytosol	11.57	14.85
AT3G16710.1	Thale cress	mitochondrion	19.28	14.79
Os08t0248400-01	Rice	mitochondrion	16.71	14.77
KRH08636	Soybean	cytosol	19.79	14.75
KRH39072	Soybean	cytosol	18.77	14.72
PGSC0003DMT400025067	Potato	cytosol	17.99	14.71
KRH39004	Soybean	cytosol	18.77	14.69
PGSC0003DMT400008757	Potato	cytosol	18.77	14.66
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	19.02	14.65
TraesCS1B01G072300.1	Wheat	plastid	21.34	14.61
KRH39074	Soybean	cytosol	18.51	14.49
Bra026882.1-P	Field mustard	cytosol	19.79	14.42
AT1G62680.2	Thale cress	plastid	20.31	14.42
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.25	14.34
AT1G63330.2	Thale cress	cytosol	20.57	14.31
Bra021192.1-P	Field mustard	plastid	18.51	14.29
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.48	14.26
AT5G16640.1	Thale cress	mitochondrion	18.25	14.09
VIT_14s0081g00120.t01	Wine grape	plastid	21.08	14.07
KRH40400	Soybean	plastid	20.82	14.04
Bra036651.1-P	Field mustard	mitochondrion	19.28	14.02
PGSC0003DMT400025074	Potato	cytosol	19.79	13.95
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.88	13.93
KRH08671	Soybean	cytosol, mitochondrion	19.79	13.92
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.77	13.9
KRH08607	Soybean	cytosol	20.05	13.9
KRH08639	Soybean	mitochondrion, plastid	20.05	13.81
Bra027026.1-P	Field mustard	mitochondrion	18.51	13.77
KRH48615	Soybean	mitochondrion	19.28	13.76
Solyc06g007740.1.1	Tomato	cytosol	20.82	13.73
KRH08628	Soybean	plastid	19.28	13.59
Solyc06g007300.1.1	Tomato	extracellular	20.57	13.51
VIT_14s0081g00270.t01	Wine grape	plastid	20.05	13.45
AT1G64580.1	Thale cress	mitochondrion	17.99	13.38
KRH39050	Soybean	mitochondrion	18.25	13.35
KRH25652	Soybean	cytosol, golgi	18.51	13.33
KRH41817	Soybean	mitochondrion	19.02	13.33
PGSC0003DMT400008760	Potato	mitochondrion	20.05	13.31
AT1G62720.1	Thale cress	mitochondrion	16.45	13.2
KRH08625	Soybean	plastid	19.54	13.19
AT1G63080.3	Thale cress	mitochondrion	20.82	13.19
KRH39066	Soybean	cytosol	18.77	13.15
KRH08277	Soybean	plastid	19.02	13.05
AT1G62930.1	Thale cress	plastid	21.08	13.04
AT1G62670.1	Thale cress	mitochondrion	21.08	13.02
PGSC0003DMT400052971	Potato	mitochondrion	19.79	12.98
Bra027726.1-P	Field mustard	mitochondrion	15.68	12.95
PGSC0003DMT400015293	Potato	mitochondrion	20.31	12.95
PGSC0003DMT400015298	Potato	mitochondrion	20.31	12.95
Solyc06g007280.2.1	Tomato	cytosol	8.48	12.94
AT5G41170.1	Thale cress	mitochondrion	17.48	12.9
AT1G63130.1	Thale cress	mitochondrion	20.82	12.86
KRH17148	Soybean	mitochondrion	17.99	12.84
KRH40513	Soybean	plastid	11.57	12.82
KRH09154	Soybean	mitochondrion	18.25	12.77
AT1G62590.1	Thale cress	mitochondrion	20.57	12.62
Solyc04g080120.1.1	Tomato	extracellular	19.79	12.58
PGSC0003DMT400056665	Potato	mitochondrion	19.02	12.56
Bra026958.1-P	Field mustard	mitochondrion	20.57	12.56
AT1G63070.1	Thale cress	mitochondrion	19.02	12.54
PGSC0003DMT400053182	Potato	cytosol	19.28	12.52
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	13.88	12.47
PGSC0003DMT400053185	Potato	mitochondrion	18.77	12.37
KRH09121	Soybean	mitochondrion	16.97	12.36
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.22	12.34
AT1G63400.1	Thale cress	cytosol, plastid	18.25	12.3
AT1G64583.1	Thale cress	mitochondrion	16.2	12.3
AT1G63150.1	Thale cress	mitochondrion	19.79	12.24
Bra031731.1-P	Field mustard	mitochondrion	15.94	12.2
AT1G62910.1	Thale cress	mitochondrion	19.79	12.18
KRH09084	Soybean	plastid	15.94	12.13
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.28	12.08
AT1G06580.1	Thale cress	mitochondrion	15.42	12.0
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.02	11.95
Bra026401.1-P	Field mustard	plastid	16.2	11.78
PGSC0003DMT400056663	Potato	plastid	17.74	11.73
Bra026957.1-P	Field mustard	mitochondrion	17.99	11.61
Bra026971.1-P	Field mustard	mitochondrion	18.77	11.61
PGSC0003DMT400053556	Potato	mitochondrion	13.62	11.55
Bra026954.1-P	Field mustard	mitochondrion	19.28	11.54
Bra028267.1-P	Field mustard	mitochondrion	18.51	11.5
AT1G12700.2	Thale cress	cytosol	18.25	11.49
AT1G12300.1	Thale cress	mitochondrion	18.77	11.46
KRH08599	Soybean	cytosol, plastid	19.54	11.36
VIT_14s0030g02280.t01	Wine grape	plastid	16.2	11.23
KRH09095	Soybean	plastid	16.71	11.11
AT4G26800.2	Thale cress	mitochondrion, plastid	14.65	11.09
Bra016762.1-P	Field mustard	mitochondrion	17.22	11.04
KRH09097	Soybean	plastid	16.45	10.98
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	10.54	10.82
AT1G62914.1	Thale cress	mitochondrion	14.4	10.61
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.22	10.4
KRH12873	Soybean	cytosol	17.99	10.06
AT1G64100.2	Thale cress	cytosol	20.82	10.05
Bra027656.1-P	Field mustard	cytosol	23.14	9.56
KRH09085	Soybean	mitochondrion	15.94	8.81
Os08t0107700-01	Rice	cytosol, mitochondrion	8.23	8.56
KRH39064	Soybean	cytosol	19.28	7.74
Bra016758.1-P	Field mustard	plastid	18.77	6.3
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	4.11	4.92
TraesCS1B01G315500.1	Wheat	mitochondrion	1.03	1.25
Os10t0497432-01	Rice	mitochondrion	0.26	0.38
TraesCS6B01G129100.1	Wheat	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6B01G114300.1	EnsemblPlantsGene:TraesCS6B01G114300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:-:96638581..96642716

Molecular Weight (calculated)

44170.2 Da

IEP (calculated)

5.920

GRAVY (calculated)

0.065

Length

389 amino acids

Sequence
(BLAST)

001: MDYLCKSRRC AEARTIFDSM AGKDQKPNVT SYSILLHAYA MEQSFHDMHC LIELMVENGV APNHSVYNIL IDAYAKGKMV DDVMHIFTKM RQQGLNPNAV
101: NYGTVINLLC SIGRMDDAML QFNQMITEEL VPDIIVFNTL ISGFFSCGKW EKVHELLAEM LNRGIYPDNV FFNTIMDHLC KNGRVMESQD LADLMIHMGL
201: KPDVHTYNTL MGGYFFIGKM DEVRKLLDHM VSIGMEPDVV TYNTLIDGYF KNGMIDDALA VFSEMLDKKV KPCVITYNTV LHGLFHTGRT VAANELYLRM
301: IDSGICVDIV TYNIILSGLC RNNCMDEALR MFQNLCSRNY QLEIRTYNIM ISALLKVGRK EEATGLLDGI SAKGFVPDAV TYRLMIQSF

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.