Factsheet for TraesCS1B01G038300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G038600.1	Wheat	cytosol	55.86	84.02
TraesCS1B01G039200.1	Wheat	mitochondrion	86.08	59.95
TraesCS1B01G038500.1	Wheat	mitochondrion	84.25	58.23
HORVU1Hr1G004750.6	Barley	plastid	84.07	57.52
TraesCS1B01G039100.1	Wheat	mitochondrion	81.69	56.96
TraesCS6B01G341800.2	Wheat	cytosol	41.03	56.14
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	68.86	53.79
TraesCS1B01G039700.1	Wheat	cytosol	58.42	52.47
TraesCS1A01G031700.1	Wheat	plastid	69.23	51.01
TraesCS1B01G038400.1	Wheat	cytosol	55.49	49.84
TraesCS1B01G038200.1	Wheat	mitochondrion	57.51	49.61
TraesCS1B01G315500.1	Wheat	mitochondrion	27.47	46.73
TraesCS1B01G084800.1	Wheat	cytosol	39.19	46.12
TraesCS1B01G092500.1	Wheat	mitochondrion	59.89	41.76
TraesCS1B01G085900.1	Wheat	mitochondrion	60.26	40.42
Zm00001d007534_P001	Maize	plastid	55.49	39.0
TraesCS1B01G085300.1	Wheat	mitochondrion	54.76	37.75
TraesCS2B01G560700.1	Wheat	plastid	53.3	37.74
TraesCS1B01G072900.2	Wheat	mitochondrion	60.07	37.57
Zm00001d007531_P001	Maize	plastid	55.68	37.35
TraesCS1B01G085400.1	Wheat	cytosol	43.77	37.29
KXG28799	Sorghum	plastid	51.65	37.11
Zm00001d007548_P001	Maize	plastid	55.13	36.98
Zm00001d007555_P001	Maize	plastid	55.13	36.98
TraesCS1B01G075300.1	Wheat	cytosol	40.29	36.85
Zm00001d007559_P001	Maize	plastid	55.13	36.84
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	51.47	36.03
TraesCS1B01G073100.1	Wheat	cytosol	39.74	35.81
TraesCS1B01G072400.1	Wheat	cytosol	45.42	35.68
TraesCS1B01G071600.1	Wheat	mitochondrion	54.58	35.14
TraesCS2B01G560300.1	Wheat	cytosol	36.08	34.62
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	47.44	33.81
TraesCS2B01G559900.1	Wheat	cytosol	32.97	33.21
KXG35774	Sorghum	cytosol, mitochondrion	28.75	33.19
TraesCS1B01G086000.1	Wheat	plastid	40.11	31.92
TraesCS1B01G073200.1	Wheat	cytosol	17.58	31.68
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	37.91	31.17
Os04t0351333-00	Rice	cytosol	47.8	29.69
TraesCS1B01G092600.1	Wheat	plastid	28.02	29.59
TraesCS7B01G469500.1	Wheat	cytosol	30.22	29.36
TraesCS2B01G126900.1	Wheat	cytosol	20.51	29.32
CDX68679	Canola	cytosol	6.04	28.7
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	36.63	27.97
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	36.26	27.69
TraesCS6B01G021600.1	Wheat	mitochondrion	36.08	27.51
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	20.88	25.97
TraesCS6B01G129100.1	Wheat	cytosol, plastid	13.55	25.69
TraesCS1B01G072300.1	Wheat	plastid	26.19	25.18
TraesCS6B01G114300.1	Wheat	cytosol	17.77	24.94
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	19.78	21.39
Os04t0349600-01	Rice	plastid	14.65	20.67
TraesCS1B01G072700.1	Wheat	cytosol	19.23	20.59
TraesCS6B01G127500.1	Wheat	cytosol	17.95	20.0
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	13.74	17.32
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	10.07	16.92
Solyc06g007810.1.1	Tomato	cytosol	8.06	16.42
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	10.62	15.3
KRH09084	Soybean	plastid	14.29	15.26
Bra026882.1-P	Field mustard	cytosol	14.47	14.79
Bra021192.1-P	Field mustard	plastid	13.55	14.68
Bra027726.1-P	Field mustard	mitochondrion	12.64	14.65
KRH48615	Soybean	mitochondrion	14.47	14.5
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.0	14.46
VIT_14s0081g00270.t01	Wine grape	plastid	15.2	14.31
AT1G62930.1	Thale cress	plastid	16.48	14.31
KRH39004	Soybean	cytosol	13.0	14.29
KRH39057	Soybean	cytosol	13.0	14.29
KRH17148	Soybean	mitochondrion	14.1	14.13
Bra006187.1-P	Field mustard	plastid	7.51	14.09
AT1G63330.2	Thale cress	cytosol	14.29	13.95
KRH39072	Soybean	cytosol	12.64	13.91
KRH39054	Soybean	cytosol	12.64	13.88
KRH39074	Soybean	cytosol	12.64	13.88
KRH09154	Soybean	mitochondrion	14.1	13.85
Bra031731.1-P	Field mustard	mitochondrion	12.82	13.78
Bra028267.1-P	Field mustard	mitochondrion	15.75	13.74
AT1G12620.1	Thale cress	cytosol, mitochondrion	15.57	13.69
KRH39112	Soybean	cytosol	12.45	13.68
Bra026971.1-P	Field mustard	mitochondrion	15.75	13.67
AT1G62670.1	Thale cress	mitochondrion	15.75	13.65
VIT_14s0081g00120.t01	Wine grape	plastid	14.47	13.55
AT1G12300.1	Thale cress	mitochondrion	15.75	13.5
Bra036651.1-P	Field mustard	mitochondrion	13.19	13.46
AT3G16710.1	Thale cress	mitochondrion	12.45	13.41
AT3G22470.1	Thale cress	cytosol, mitochondrion	15.2	13.41
AT1G63070.1	Thale cress	mitochondrion	14.47	13.39
KRH08671	Soybean	cytosol, mitochondrion	13.55	13.38
AT1G12775.1	Thale cress	cytosol, mitochondrion	15.75	13.35
KRH39066	Soybean	cytosol	13.55	13.33
PGSC0003DMT400008759	Potato	cytosol	7.69	13.17
AT5G16640.1	Thale cress	mitochondrion	12.09	13.1
AT1G64583.1	Thale cress	mitochondrion	12.27	13.09
Bra036649.1-P	Field mustard	cytosol	9.34	13.04
KRH08628	Soybean	plastid	13.19	13.04
AT1G63130.1	Thale cress	mitochondrion	15.02	13.02
AT1G62910.1	Thale cress	mitochondrion	15.02	12.97
AT1G62590.1	Thale cress	mitochondrion	15.02	12.93
Bra026958.1-P	Field mustard	mitochondrion	15.02	12.87
AT1G63080.3	Thale cress	mitochondrion	14.47	12.87
VIT_14s0081g00280.t01	Wine grape	mitochondrion	15.02	12.83
AT1G64580.1	Thale cress	mitochondrion	12.27	12.81
AT1G62680.2	Thale cress	plastid	12.82	12.77
Bra016762.1-P	Field mustard	mitochondrion	14.1	12.69
KRH08625	Soybean	plastid	13.37	12.67
KRH08636	Soybean	cytosol	12.09	12.64
VIT_14s0081g00110.t01	Wine grape	cytosol	11.36	12.63
AT1G06580.1	Thale cress	mitochondrion	11.54	12.6
VIT_12s0028g02320.t01	Wine grape	mitochondrion	10.99	12.58
AT1G62720.1	Thale cress	mitochondrion	11.17	12.58
KRH08639	Soybean	mitochondrion, plastid	13.0	12.57
AT1G63150.1	Thale cress	mitochondrion	14.47	12.56
KRH08277	Soybean	plastid	13.0	12.52
KRH09097	Soybean	plastid	13.37	12.52
KRH40400	Soybean	plastid	13.19	12.48
VIT_14s0030g02260.t01	Wine grape	cytosol	10.07	12.42
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	11.9	12.38
KRH09121	Soybean	mitochondrion	12.09	12.36
KRH31646	Soybean	cytosol	11.72	12.36
Bra027658.1-P	Field mustard	cytosol, mitochondrion	12.27	12.34
KRH09095	Soybean	plastid	13.19	12.31
KRH41817	Soybean	mitochondrion	12.45	12.25
Bra026954.1-P	Field mustard	mitochondrion	14.47	12.15
Bra026401.1-P	Field mustard	plastid	11.9	12.15
AT1G63400.1	Thale cress	cytosol, plastid	12.82	12.13
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	11.17	12.08
AT1G12700.2	Thale cress	cytosol	13.55	11.97
AT5G41170.1	Thale cress	mitochondrion	11.54	11.95
Bra025516.1-P	Field mustard	cytosol, mitochondrion	10.26	11.74
KRH25652	Soybean	cytosol, golgi	11.54	11.67
Bra027026.1-P	Field mustard	mitochondrion	11.17	11.66
KRH39050	Soybean	mitochondrion	11.36	11.65
KRH08607	Soybean	cytosol	11.9	11.59
PGSC0003DMT400008757	Potato	cytosol	10.44	11.45
Solyc04g080120.1.1	Tomato	extracellular	12.82	11.44
AT1G64100.2	Thale cress	cytosol	16.85	11.41
PGSC0003DMT400025074	Potato	cytosol	11.54	11.41
AT1G62914.1	Thale cress	mitochondrion	10.99	11.36
PGSC0003DMT400015293	Potato	mitochondrion	12.64	11.31
PGSC0003DMT400015298	Potato	mitochondrion	12.64	11.31
PGSC0003DMT400052977	Potato	cytosol	8.06	11.31
KRH09085	Soybean	mitochondrion	14.47	11.22
PGSC0003DMT400053185	Potato	mitochondrion	12.09	11.19
Solyc06g007740.1.1	Tomato	cytosol	12.09	11.19
Solyc06g007300.1.1	Tomato	extracellular	12.09	11.15
Bra026957.1-P	Field mustard	mitochondrion	12.27	11.11
KRH40513	Soybean	plastid	7.14	11.11
AT4G26800.2	Thale cress	mitochondrion, plastid	10.44	11.09
PGSC0003DMT400056663	Potato	plastid	11.9	11.05
PGSC0003DMT400052971	Potato	mitochondrion	11.9	10.96
Bra027636.1-P	Field mustard	cytosol	6.41	10.8
PGSC0003DMT400008760	Potato	mitochondrion	11.54	10.75
VIT_14s0030g02280.t01	Wine grape	plastid	10.99	10.7
Solyc06g005220.2.1	Tomato	cytosol	7.69	10.34
Bra026884.1-P	Field mustard	cytosol	8.61	10.24
PGSC0003DMT400056665	Potato	mitochondrion	10.99	10.19
PGSC0003DMT400053182	Potato	cytosol	11.17	10.18
KRH08599	Soybean	cytosol, plastid	12.27	10.01
PGSC0003DMT400053556	Potato	mitochondrion	8.24	9.8
Bra027656.1-P	Field mustard	cytosol	16.48	9.56
PGSC0003DMT400025087	Potato	endoplasmic reticulum	8.61	9.49
KRH09082	Soybean	cytosol	6.96	9.31
KRH39064	Soybean	cytosol	15.75	8.88
PGSC0003DMT400025067	Potato	cytosol	7.51	8.61
KRH12873	Soybean	cytosol	10.81	8.48
TraesCS6B01G127200.1	Wheat	cytosol	4.95	7.85
Bra016758.1-P	Field mustard	plastid	14.1	6.64
Bra027029.1-P	Field mustard	mitochondrion	2.75	6.17
Solyc06g007280.2.1	Tomato	cytosol	0.92	1.96

Protein Annotations

EnsemblPlants:TraesCS1B01G038300.1	EnsemblPlantsGene:TraesCS1B01G038300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:17964601..17966241

Molecular Weight (calculated)

60355.0 Da

IEP (calculated)

8.929

GRAVY (calculated)

0.077

Length

546 amino acids

Sequence
(BLAST)

001: MPGFSSAASM SPLRLRLRLH ARHSSSASQP SRRQGWDPHA AFAAATECAR SGNLTPEDAH HLFDELLRQG NPVLGRPLNN LLAALARAPA SSACRDGPAL
101: AVALFSRISQ GARLRVLHPT ACTYGILMDC SCRAHRLNLA FAFFGRLLRT GLKAGVIEVN SLLKGLCHAK RADEAMEVLL HRMPELFIGV QGTAVYRSLI
201: QGFCTHGDLV KAKEYVTEMM KKGMPPPDIM FFSSIMQNLC TEGRVIEARD ILDLIVRIGM RPDVFIFNIL IGGYCLVGKM EDASKIFDDM VSYGLEPCNF
301: TYGILINGYC KNKRIDDGLI LFKEMLRKGL KPTTFNYNVI LDGLFLAGQT VAAKEKFDEM VESGVSVCID TYSIVLGGLC RNSCSSEAIT LFRKLSAMNV
401: KFNITIVNTI IGAFYRVERN QEAKDLFAAI PASGLVPNVV TYTIMIKNLI KEGSVEEADN LFLSMEKSGC SANSYLLNHI IRRLLEKGEI VKAGNYMSKV
501: DAKSYSLEAK TVSLLISLFS RKGKYREHIK LLPTKYQFLE EAATVE

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.