Factsheet for TraesCS1B01G072300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G315500.1	Wheat	mitochondrion	33.45	59.19
TraesCS1B01G092600.1	Wheat	plastid	51.58	56.67
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	42.78	55.35
TraesCS6B01G127200.1	Wheat	cytosol	32.39	53.49
TraesCS6B01G127500.1	Wheat	cytosol	45.77	53.06
TraesCS1D01G056200.1	Wheat	mitochondrion	76.94	52.97
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	39.79	52.19
TraesCS2B01G126900.1	Wheat	cytosol	34.86	51.83
TraesCS1B01G086000.1	Wheat	plastid	61.09	50.58
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	44.72	50.3
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	68.13	49.62
TraesCS1B01G072900.2	Wheat	mitochondrion	72.54	47.19
TraesCS1B01G038200.1	Wheat	mitochondrion	52.29	46.92
TraesCS1B01G072700.1	Wheat	cytosol	41.9	46.67
TraesCS1B01G072400.1	Wheat	cytosol	55.28	45.18
TraesCS1B01G071600.1	Wheat	mitochondrion	66.37	44.46
Os04t0349600-01	Rice	plastid	30.28	44.44
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	51.94	44.43
TraesCS1B01G092500.1	Wheat	mitochondrion	60.21	43.68
TraesCS1B01G073200.1	Wheat	cytosol	23.06	43.23
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	24.47	42.77
TraesCS1B01G085900.1	Wheat	mitochondrion	61.09	42.63
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	26.58	39.84
TraesCS6B01G129100.1	Wheat	cytosol, plastid	19.89	39.24
TraesCS1B01G039200.1	Wheat	mitochondrion	53.7	38.9
KXG28799	Sorghum	plastid	51.41	38.42
TraesCS1B01G085300.1	Wheat	mitochondrion	53.35	38.26
TraesCS1B01G038500.1	Wheat	mitochondrion	52.82	37.97
TraesCS1B01G073100.1	Wheat	cytosol	39.61	37.13
TraesCS1B01G039100.1	Wheat	mitochondrion	50.7	36.78
TraesCS1B01G075300.1	Wheat	cytosol	38.56	36.68
TraesCS7B01G469500.1	Wheat	cytosol	35.74	36.12
TraesCS2B01G560700.1	Wheat	plastid	48.06	35.41
Zm00001d007548_P001	Maize	plastid	50.0	34.89
Zm00001d007559_P001	Maize	plastid	50.18	34.88
Zm00001d007555_P001	Maize	plastid	49.65	34.64
Zm00001d007534_P001	Maize	plastid	47.36	34.62
Solyc06g007280.2.1	Tomato	cytosol	15.49	34.51
Zm00001d007531_P001	Maize	plastid	49.3	34.4
TraesCS1B01G085400.1	Wheat	cytosol	36.62	32.45
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	42.78	31.72
TraesCS1B01G038400.1	Wheat	cytosol	33.27	31.09
TraesCS1B01G039700.1	Wheat	cytosol	32.92	30.76
TraesCS6B01G021600.1	Wheat	mitochondrion	38.2	30.31
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	37.15	29.51
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	36.62	29.09
TraesCS2B01G559900.1	Wheat	cytosol	25.53	26.75
KRH40513	Soybean	plastid	16.37	26.5
TraesCS1B01G038300.1	Wheat	plastid	25.18	26.19
TraesCS2B01G560300.1	Wheat	cytosol	26.06	26.01
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.13	25.16
Os04t0351333-00	Rice	cytosol	38.91	25.14
KRH39004	Soybean	cytosol	21.65	24.75
KRH39054	Soybean	cytosol	21.65	24.75
KRH39057	Soybean	cytosol	21.13	24.14
KRH39074	Soybean	cytosol	21.13	24.14
KRH39112	Soybean	cytosol	21.13	24.14
TraesCS1B01G084800.1	Wheat	cytosol	19.72	24.14
AT1G62914.1	Thale cress	mitochondrion	22.36	24.05
KRH39072	Soybean	cytosol	20.95	23.99
KRH09084	Soybean	plastid	21.48	23.87
AT5G16640.1	Thale cress	mitochondrion	21.13	23.81
Bra027029.1-P	Field mustard	mitochondrion	10.04	23.46
KRH39050	Soybean	mitochondrion	21.65	23.12
AT1G63330.2	Thale cress	cytosol	22.71	23.08
AT1G63400.1	Thale cress	cytosol, plastid	23.42	23.05
KRH39066	Soybean	cytosol	22.01	22.52
Solyc06g005220.2.1	Tomato	cytosol	16.02	22.41
AT1G62670.1	Thale cress	mitochondrion	24.82	22.38
PGSC0003DMT400052977	Potato	cytosol	15.32	22.36
Bra036649.1-P	Field mustard	cytosol	15.32	22.25
AT1G63080.3	Thale cress	mitochondrion	23.94	22.15
VIT_14s0081g00120.t01	Wine grape	plastid	22.71	22.13
KRH17148	Soybean	mitochondrion	21.13	22.02
KRH09154	Soybean	mitochondrion	21.48	21.94
KRH09121	Soybean	mitochondrion	20.6	21.91
KRH48615	Soybean	mitochondrion	20.95	21.83
VIT_14s0030g02280.t01	Wine grape	plastid	21.48	21.75
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.59	21.65
Bra021192.1-P	Field mustard	plastid	19.19	21.63
AT1G62590.1	Thale cress	mitochondrion	24.12	21.61
Bra027636.1-P	Field mustard	cytosol	12.32	21.6
VIT_14s0081g00110.t01	Wine grape	cytosol	18.66	21.59
KRH08277	Soybean	plastid	21.48	21.52
KRH08636	Soybean	cytosol	19.72	21.46
AT1G64580.1	Thale cress	mitochondrion	19.72	21.41
AT1G63070.1	Thale cress	mitochondrion	22.18	21.36
PGSC0003DMT400053556	Potato	mitochondrion	17.25	21.35
TraesCS6B01G114300.1	Wheat	cytosol	14.61	21.34
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.72	21.33
AT1G63130.1	Thale cress	mitochondrion	23.59	21.27
KRH08607	Soybean	cytosol	20.95	21.21
KRH40400	Soybean	plastid	21.48	21.14
PGSC0003DMT400008757	Potato	cytosol	18.49	21.08
KRH41817	Soybean	mitochondrion	20.6	21.08
AT1G62910.1	Thale cress	mitochondrion	23.42	21.04
VIT_14s0081g00270.t01	Wine grape	plastid	21.48	21.03
AT1G62720.1	Thale cress	mitochondrion	17.96	21.03
KRH08628	Soybean	plastid	20.42	21.01
KRH08625	Soybean	plastid	21.3	21.01
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.61	20.96
Bra006187.1-P	Field mustard	plastid	10.74	20.96
Bra036651.1-P	Field mustard	mitochondrion	19.72	20.93
Bra026884.1-P	Field mustard	cytosol	16.9	20.91
AT1G12300.1	Thale cress	mitochondrion	23.42	20.88
AT1G62930.1	Thale cress	plastid	23.06	20.83
Bra026971.1-P	Field mustard	mitochondrion	23.06	20.83
AT1G12775.1	Thale cress	cytosol, mitochondrion	23.59	20.81
KRH08671	Soybean	cytosol, mitochondrion	20.25	20.8
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.49	20.79
KRH08639	Soybean	mitochondrion, plastid	20.6	20.71
Solyc06g007740.1.1	Tomato	cytosol	21.48	20.68
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.54	20.61
Bra028267.1-P	Field mustard	mitochondrion	22.71	20.61
Bra026882.1-P	Field mustard	cytosol	19.37	20.6
Bra026958.1-P	Field mustard	mitochondrion	23.06	20.57
KRH09095	Soybean	plastid	21.13	20.51
KXG35774	Sorghum	cytosol, mitochondrion	17.08	20.51
KRH09097	Soybean	plastid	20.95	20.41
PGSC0003DMT400056665	Potato	mitochondrion	21.13	20.37
AT1G64583.1	Thale cress	mitochondrion	18.31	20.31
Bra026954.1-P	Field mustard	mitochondrion	23.24	20.31
Solyc06g007300.1.1	Tomato	extracellular	21.13	20.27
AT1G06580.1	Thale cress	mitochondrion	17.78	20.2
PGSC0003DMT400053185	Potato	mitochondrion	20.95	20.17
AT3G16710.1	Thale cress	mitochondrion	17.96	20.12
AT5G41170.1	Thale cress	mitochondrion	18.66	20.11
Bra016762.1-P	Field mustard	mitochondrion	21.48	20.1
PGSC0003DMT400025074	Potato	cytosol	19.37	19.93
PGSC0003DMT400052971	Potato	mitochondrion	20.77	19.9
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.01	19.89
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.36	19.87
AT1G63150.1	Thale cress	mitochondrion	22.01	19.87
KRH25652	Soybean	cytosol, golgi	18.84	19.81
PGSC0003DMT400008760	Potato	mitochondrion	20.42	19.8
AT1G12700.2	Thale cress	cytosol	21.48	19.74
Bra027026.1-P	Field mustard	mitochondrion	18.13	19.69
KRH31646	Soybean	cytosol	17.96	19.69
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.08	19.6
PGSC0003DMT400056663	Potato	plastid	20.25	19.56
PGSC0003DMT400025067	Potato	cytosol	16.37	19.54
AT1G62680.2	Thale cress	plastid	18.84	19.53
AT4G26800.2	Thale cress	mitochondrion, plastid	17.43	19.26
Bra026957.1-P	Field mustard	mitochondrion	20.42	19.24
KRH09082	Soybean	cytosol	13.73	19.12
Bra031731.1-P	Field mustard	mitochondrion	16.9	18.9
PGSC0003DMT400053182	Potato	cytosol	19.54	18.53
Bra026401.1-P	Field mustard	plastid	16.9	17.94
PGSC0003DMT400015293	Potato	mitochondrion	19.01	17.7
PGSC0003DMT400015298	Potato	mitochondrion	19.01	17.7
Solyc04g080120.1.1	Tomato	extracellular	18.84	17.48
KRH09085	Soybean	mitochondrion	21.65	17.47
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.96	17.31
PGSC0003DMT400008759	Potato	cytosol	9.68	17.24
KRH08599	Soybean	cytosol, plastid	20.25	17.19
Bra027726.1-P	Field mustard	mitochondrion	14.08	16.99
AT1G64100.2	Thale cress	cytosol	22.89	16.13
KRH12873	Soybean	cytosol	19.37	15.8
Solyc06g007810.1.1	Tomato	cytosol	7.22	15.3
TraesCS6B01G341800.2	Wheat	cytosol	10.39	14.79
VIT_14s0030g02260.t01	Wine grape	cytosol	10.92	14.0
Bra027656.1-P	Field mustard	cytosol	22.54	13.6
KRH39064	Soybean	cytosol	22.89	13.42
Bra016758.1-P	Field mustard	plastid	22.54	11.04
TraesCS1B01G038600.1	Wheat	cytosol	5.81	9.09
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1B01G072300.1	EnsemblPlantsGene:TraesCS1B01G072300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:57009346..57012053

Molecular Weight (calculated)

62723.8 Da

IEP (calculated)

9.043

GRAVY (calculated)

-0.031

Length

568 amino acids

Sequence
(BLAST)

001: MSGLRLRPRR SSSSTFPMPR SRLRHYASAM PMSSLRPLHR SSSSTTSPAR AWSPHAAFAA ATERVRAGAL RPEDAHTLFD ELLRQATPVP ERSLNGFLAA
101: LARAPASGNC IRDGPALAVV LFNRVCREEA GPQVAALTGC TYSILMDCYC RARRPDLGLA LFGRFLREGL KTHQIVANTF LKCLCYAKLT DEAVDVLLHR
201: MSEFGCVPDA ISYNTVLKSL CDNGMSQRGL ELLQMIAKEV GVCSLNLVAY NTVIYGFFKE GETGKACNLF HEMMQQGVEP DVVTYNLIID ALCKARAMDK
301: AEVVLQQMIS KGAQPDTVTY NCMINGYATS GRLKKSAKMF REMKSRGLMP DIVTCNSFLS SLCKHGRSKE AREIFDSMTA KGHKPDIVSY RILLHGYASE
401: GCFADMIDLF NSMKSNGIAA DCRVFTILIG AYAKHGMMDD AMLIFTEMQQ QGLSPNVVTY STVISALSRM GRLANAMEKF NQMISMGVQP NKAVYHTLIQ
501: GSCMHGDLIK AKELVSEMMN KADKYTSSCW TLLHSMLLSV ALVGARHIQV KVWPRIHRCE LSLQGVGH

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.