Factsheet for TraesCS1B01G074600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G058000.1	Wheat	cytosol	47.44	91.13
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	65.9	77.41
TraesCS1B01G072400.1	Wheat	cytosol	64.23	72.09
TraesCS1B01G075300.1	Wheat	cytosol	54.49	71.19
TraesCS1B01G073200.1	Wheat	cytosol	27.05	69.64
TraesCS1B01G092500.1	Wheat	mitochondrion	68.46	68.2
TraesCS1B01G072300.1	Wheat	plastid	49.62	68.13
TraesCS1B01G071600.1	Wheat	mitochondrion	72.56	66.75
TraesCS1B01G072900.2	Wheat	mitochondrion	74.62	66.67
TraesCS1B01G086000.1	Wheat	plastid	57.56	65.45
TraesCS1B01G073100.1	Wheat	cytosol	50.0	64.36
TraesCS1B01G072700.1	Wheat	cytosol	42.05	64.31
TraesCS1B01G085900.1	Wheat	mitochondrion	67.05	64.25
TraesCS1B01G092600.1	Wheat	plastid	41.79	63.06
TraesCS2B01G126900.1	Wheat	cytosol	30.77	62.83
TraesCS1B01G085300.1	Wheat	mitochondrion	62.18	61.24
TraesCS1B01G315500.1	Wheat	mitochondrion	24.87	60.44
TraesCS1B01G085400.1	Wheat	cytosol	49.62	60.37
TraesCS1B01G038200.1	Wheat	mitochondrion	47.56	58.61
TraesCS6B01G341800.2	Wheat	cytosol	29.62	57.89
TraesCS1B01G084800.1	Wheat	cytosol	34.1	57.33
TraesCS1B01G039200.1	Wheat	mitochondrion	56.67	56.38
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	31.67	56.26
TraesCS6B01G127200.1	Wheat	cytosol	24.49	55.52
TraesCS7B01G469500.1	Wheat	cytosol	39.74	55.16
TraesCS1B01G038500.1	Wheat	mitochondrion	55.77	55.06
TraesCS6B01G127500.1	Wheat	cytosol	34.36	54.69
TraesCS1B01G039100.1	Wheat	mitochondrion	54.87	54.66
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	30.26	54.5
TraesCS1B01G039700.1	Wheat	cytosol	42.31	54.28
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	35.0	54.06
KXG28799	Sorghum	plastid	52.44	53.82
Zm00001d007548_P001	Maize	plastid	56.15	53.81
Zm00001d007559_P001	Maize	plastid	56.28	53.73
TraesCS1B01G038400.1	Wheat	cytosol	41.79	53.62
Zm00001d007531_P001	Maize	plastid	55.9	53.56
Zm00001d007555_P001	Maize	plastid	55.77	53.44
Zm00001d007534_P001	Maize	plastid	52.95	53.15
TraesCS2B01G560700.1	Wheat	plastid	52.05	52.66
TraesCS1B01G038300.1	Wheat	plastid	36.03	51.47
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.49	50.39
TraesCS2B01G560300.1	Wheat	cytosol	36.54	50.09
TraesCS2B01G559900.1	Wheat	cytosol	34.74	50.0
KXG35774	Sorghum	cytosol, mitochondrion	28.59	47.15
TraesCS1B01G038600.1	Wheat	cytosol	21.54	46.28
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	18.59	44.62
Os04t0349600-01	Rice	plastid	21.79	43.93
TraesCS6B01G021600.1	Wheat	mitochondrion	38.59	42.04
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	38.46	41.96
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	38.46	41.96
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	20.13	41.42
TraesCS6B01G129100.1	Wheat	cytosol, plastid	14.87	40.28
Os04t0351333-00	Rice	cytosol	45.38	40.27
TraesCS6B01G114300.1	Wheat	cytosol	19.62	39.33
KRH39054	Soybean	cytosol	21.54	33.8
KRH39057	Soybean	cytosol	21.28	33.4
Solyc06g007280.2.1	Tomato	cytosol	10.77	32.94
KRH39004	Soybean	cytosol	20.9	32.8
KRH39072	Soybean	cytosol	20.64	32.46
KRH39074	Soybean	cytosol	20.64	32.39
KRH39112	Soybean	cytosol	20.64	32.39
Bra027636.1-P	Field mustard	cytosol	12.69	30.56
Solyc06g005220.2.1	Tomato	cytosol	15.77	30.3
KRH17148	Soybean	mitochondrion	20.9	29.91
KRH09084	Soybean	plastid	19.49	29.75
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.95	29.35
KRH09154	Soybean	mitochondrion	20.9	29.32
KRH08639	Soybean	mitochondrion, plastid	21.03	29.03
KRH39066	Soybean	cytosol	20.64	29.01
KRH48615	Soybean	mitochondrion	20.26	28.99
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.72	28.91
Bra006187.1-P	Field mustard	plastid	10.77	28.87
KRH08277	Soybean	plastid	20.77	28.57
PGSC0003DMT400052977	Potato	cytosol	14.1	28.28
KRH40513	Soybean	plastid	12.69	28.21
KRH08628	Soybean	plastid	19.87	28.08
KRH08636	Soybean	cytosol	18.72	27.97
KRH08671	Soybean	cytosol, mitochondrion	19.74	27.85
KRH41817	Soybean	mitochondrion	19.74	27.75
KRH08607	Soybean	cytosol	19.87	27.63
Solyc06g007810.1.1	Tomato	cytosol	9.49	27.61
KRH08625	Soybean	plastid	20.38	27.6
AT1G63330.2	Thale cress	cytosol	19.74	27.55
VIT_14s0081g00110.t01	Wine grape	cytosol	17.31	27.49
KRH40400	Soybean	plastid	20.26	27.38
Bra026884.1-P	Field mustard	cytosol	16.03	27.23
AT5G16640.1	Thale cress	mitochondrion	17.56	27.18
KRH09121	Soybean	mitochondrion	18.46	26.97
PGSC0003DMT400008759	Potato	cytosol	11.03	26.96
Bra036649.1-P	Field mustard	cytosol	13.46	26.85
AT1G12300.1	Thale cress	mitochondrion	21.92	26.84
Bra021192.1-P	Field mustard	plastid	17.18	26.59
KRH39050	Soybean	mitochondrion	18.08	26.5
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.82	26.48
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.9	26.33
PGSC0003DMT400025074	Potato	cytosol	18.59	26.27
VIT_14s0081g00120.t01	Wine grape	plastid	19.62	26.24
KRH09082	Soybean	cytosol	13.72	26.23
AT1G63400.1	Thale cress	cytosol, plastid	19.36	26.17
KRH25652	Soybean	cytosol, golgi	18.08	26.11
PGSC0003DMT400008757	Potato	cytosol	16.67	26.1
KRH31646	Soybean	cytosol	17.18	25.87
Bra016762.1-P	Field mustard	mitochondrion	20.13	25.86
VIT_14s0081g00270.t01	Wine grape	plastid	19.23	25.86
VIT_14s0030g02280.t01	Wine grape	plastid	18.59	25.85
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.51	25.76
PGSC0003DMT400053185	Potato	mitochondrion	19.49	25.76
Bra026882.1-P	Field mustard	cytosol	17.56	25.66
AT3G16710.1	Thale cress	mitochondrion	16.67	25.64
KRH09095	Soybean	plastid	19.23	25.64
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.15	25.62
Solyc06g007740.1.1	Tomato	cytosol	19.36	25.59
KRH09097	Soybean	plastid	19.1	25.56
AT1G62670.1	Thale cress	mitochondrion	20.64	25.56
AT1G63130.1	Thale cress	mitochondrion	20.64	25.56
AT1G62590.1	Thale cress	mitochondrion	20.77	25.55
AT1G62930.1	Thale cress	plastid	20.51	25.44
PGSC0003DMT400025067	Potato	cytosol	15.51	25.42
AT1G63080.3	Thale cress	mitochondrion	20.0	25.41
Solyc06g007300.1.1	Tomato	extracellular	19.1	25.17
AT1G63150.1	Thale cress	mitochondrion	20.26	25.12
Bra027029.1-P	Field mustard	mitochondrion	7.82	25.1
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.77	25.05
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.9	25.05
AT1G64580.1	Thale cress	mitochondrion	16.79	25.05
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.51	25.04
AT1G62910.1	Thale cress	mitochondrion	20.26	25.0
AT1G62914.1	Thale cress	mitochondrion	16.92	25.0
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.26	24.95
Bra026971.1-P	Field mustard	mitochondrion	20.0	24.8
PGSC0003DMT400056665	Potato	mitochondrion	18.72	24.79
Bra028267.1-P	Field mustard	mitochondrion	19.87	24.76
AT1G62720.1	Thale cress	mitochondrion	15.38	24.74
Bra036651.1-P	Field mustard	mitochondrion	16.92	24.67
PGSC0003DMT400056663	Potato	plastid	18.59	24.66
Bra026954.1-P	Field mustard	mitochondrion	20.51	24.62
Solyc04g080120.1.1	Tomato	extracellular	19.23	24.51
AT1G63070.1	Thale cress	mitochondrion	18.46	24.41
PGSC0003DMT400052971	Potato	mitochondrion	18.46	24.28
PGSC0003DMT400008760	Potato	mitochondrion	18.21	24.23
Bra031731.1-P	Field mustard	mitochondrion	15.77	24.21
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.79	24.13
PGSC0003DMT400053182	Potato	cytosol	18.46	24.04
AT1G64583.1	Thale cress	mitochondrion	15.77	24.02
Bra026958.1-P	Field mustard	mitochondrion	19.62	24.02
AT1G06580.1	Thale cress	mitochondrion	15.38	24.0
AT1G12700.2	Thale cress	cytosol	18.97	23.95
PGSC0003DMT400015293	Potato	mitochondrion	18.59	23.77
PGSC0003DMT400015298	Potato	mitochondrion	18.59	23.77
AT5G41170.1	Thale cress	mitochondrion	16.03	23.72
Bra026957.1-P	Field mustard	mitochondrion	18.33	23.71
PGSC0003DMT400053556	Potato	mitochondrion	13.85	23.53
CDX68679	Canola	cytosol	3.46	23.48
AT1G62680.2	Thale cress	plastid	16.41	23.36
Bra026401.1-P	Field mustard	plastid	15.9	23.18
Bra027026.1-P	Field mustard	mitochondrion	15.51	23.14
KRH08599	Soybean	cytosol, plastid	19.36	22.57
Bra027726.1-P	Field mustard	mitochondrion	13.59	22.51
AT4G26800.2	Thale cress	mitochondrion, plastid	14.62	22.18
VIT_14s0030g02260.t01	Wine grape	cytosol	12.31	21.67
KRH09085	Soybean	mitochondrion	19.49	21.59
AT1G64100.2	Thale cress	cytosol	21.67	20.97
Bra027656.1-P	Field mustard	cytosol	23.72	19.66
KRH12873	Soybean	cytosol	17.18	19.25
KRH39064	Soybean	cytosol	22.44	18.06
Bra016758.1-P	Field mustard	plastid	19.49	13.11

Protein Annotations

EnsemblPlants:TraesCS1B01G074600.1	EnsemblPlantsGene:TraesCS1B01G074600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:57789346..57791688

Molecular Weight (calculated)

85513.4 Da

IEP (calculated)

8.501

GRAVY (calculated)

0.070

Length

780 amino acids

Sequence
(BLAST)

001: MSRLRLRRSS TTPMFHILRR SSSSTSISPP SRSWSPEGAF AAATARLSTG TLSPEEAHHL FDELLRQATP VPSRSLNGFL ATLARAPASA ACSRDGPALA
101: LALALFNRVC AEEADPRVAP LTVHTYGILM DCCCRARRPD LGLALFARFL RTGLKTNEII ANTFLKCLCY AKRTDEAINL LLHRMPELGC VPDAISYTIV
201: LKSLCENSMS QRALDLLQMV AEGGGACSLN VVAYSTVIHG FFKEGETGKA CNLFHEMTRQ GVVPNVVTYS SIIDALCKSR AMDKAELVLQ QMVDSGAQPN
301: NVTYNCMIHG YSTSGQLKEA AKMFRKMTSH GLVPNAVTCS SLMTSLCKHG RSKEAAEIFY SMTAKGHKPD AVSYRILLHG YANEGCFADM IDLFNSMKSN
401: GIAADCRVFT ILIDAYAKRG MMDDAMHIFA EMREKGVSPN VVTYATVIAA LCRLGRLADA MDRFNEMTDM GVQPNTAVYH SLIQGFCMHG DLGKAKELVS
501: DMISKGIPRP NIVFFNSVIN YLCKEGRIMD AQDIFELVII IDGKPDVITF NSLIDGHCLV GKMDKAFGVL DAMLSAGIEP NVVTYNTLVN GYSRNGRIDD
601: GLTLFRQMPR KRIKPDSATY GIILDGLFRA GRTVAARKMF HDMIESGITV SISTYNIILA GLSRNNCAEE AIDLYQKLVA MNVKFNISII NTMINAMYKV
701: KRKEEAKDLF AAISASGLVP NASTYGVMII NILKDGAVED ANNMFSAMDR NGIAPCSRLI NSIIRILLKK VRSPWPDFIC

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.