Factsheet for TraesCS1B01G071600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G054700.2	Wheat	mitochondrion	75.35	78.69
TraesCS1D01G055300.1	Wheat	cytosol	57.08	78.32
TraesCS1A01G054500.1	Wheat	mitochondrion	69.81	75.9
TraesCS1B01G072400.1	Wheat	cytosol	59.79	72.95
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	66.75	72.56
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	54.72	69.88
TraesCS1B01G092500.1	Wheat	mitochondrion	63.33	68.58
TraesCS1B01G072900.2	Wheat	mitochondrion	69.93	67.93
TraesCS1B01G073200.1	Wheat	cytosol	24.06	67.33
TraesCS1B01G085900.1	Wheat	mitochondrion	64.62	67.32
TraesCS1B01G075300.1	Wheat	cytosol	47.29	67.17
TraesCS1B01G073100.1	Wheat	cytosol	47.76	66.83
TraesCS1B01G072300.1	Wheat	plastid	44.46	66.37
TraesCS1B01G072700.1	Wheat	cytosol	39.62	65.88
TraesCS1B01G086000.1	Wheat	plastid	52.71	65.16
TraesCS1B01G092600.1	Wheat	plastid	39.27	64.41
TraesCS1B01G315500.1	Wheat	mitochondrion	24.29	64.17
TraesCS2B01G126900.1	Wheat	cytosol	28.77	63.87
TraesCS1B01G085300.1	Wheat	mitochondrion	56.72	60.73
TraesCS1B01G038200.1	Wheat	mitochondrion	45.28	60.66
TraesCS1B01G084800.1	Wheat	cytosol	32.9	60.13
TraesCS1B01G085400.1	Wheat	cytosol	44.93	59.44
TraesCS1B01G039200.1	Wheat	mitochondrion	54.01	58.42
TraesCS1B01G039100.1	Wheat	mitochondrion	53.77	58.24
TraesCS1B01G038400.1	Wheat	cytosol	41.27	57.57
TraesCS1B01G038500.1	Wheat	mitochondrion	53.54	57.47
TraesCS6B01G341800.2	Wheat	cytosol	26.89	57.14
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	29.01	56.04
TraesCS1B01G039700.1	Wheat	cytosol	39.86	55.59
TraesCS6B01G127200.1	Wheat	cytosol	22.41	55.23
TraesCS1B01G038300.1	Wheat	plastid	35.14	54.58
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	32.19	54.06
KXG28799	Sorghum	plastid	48.35	53.95
Zm00001d007531_P001	Maize	plastid	51.65	53.81
TraesCS7B01G469500.1	Wheat	cytosol	35.5	53.56
Zm00001d007548_P001	Maize	plastid	51.18	53.32
Zm00001d007555_P001	Maize	plastid	51.18	53.32
Zm00001d007559_P001	Maize	plastid	51.3	53.24
Zm00001d007534_P001	Maize	plastid	48.47	52.9
TraesCS6B01G127500.1	Wheat	cytosol	30.31	52.45
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.77	52.42
TraesCS2B01G560700.1	Wheat	plastid	47.17	51.88
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	46.7	51.7
TraesCS1B01G038600.1	Wheat	cytosol	21.7	50.69
KXG35774	Sorghum	cytosol, mitochondrion	27.0	48.41
TraesCS2B01G560300.1	Wheat	cytosol	32.08	47.8
TraesCS2B01G559900.1	Wheat	cytosol	30.31	47.42
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	17.1	44.62
Os04t0349600-01	Rice	plastid	20.28	44.44
TraesCS6B01G021600.1	Wheat	mitochondrion	36.56	43.3
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	36.44	43.22
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	36.2	42.94
Os04t0351333-00	Rice	cytosol	44.1	42.55
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	18.99	42.48
TraesCS6B01G129100.1	Wheat	cytosol, plastid	14.39	42.36
TraesCS6B01G114300.1	Wheat	cytosol	17.92	39.07
Solyc06g007280.2.1	Tomato	cytosol	10.73	35.69
KRH39112	Soybean	cytosol	19.69	33.6
KRH39054	Soybean	cytosol	19.46	33.2
KRH39074	Soybean	cytosol	19.22	32.8
Solyc06g005220.2.1	Tomato	cytosol	15.45	32.27
KRH40513	Soybean	plastid	13.33	32.19
KRH39004	Soybean	cytosol	18.87	32.19
KRH39057	Soybean	cytosol	18.87	32.19
KRH39072	Soybean	cytosol	18.63	31.85
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.22	30.61
KRH17148	Soybean	mitochondrion	19.58	30.46
KRH09084	Soybean	plastid	18.28	30.33
VIT_14s0081g00110.t01	Wine grape	cytosol	17.45	30.14
KRH39066	Soybean	cytosol	19.69	30.09
PGSC0003DMT400052977	Potato	cytosol	13.8	30.08
KRH08636	Soybean	cytosol	18.51	30.08
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.81	29.9
Solyc06g007810.1.1	Tomato	cytosol	9.43	29.85
KRH08628	Soybean	plastid	18.99	29.17
VIT_14s0081g00120.t01	Wine grape	plastid	20.05	29.16
PGSC0003DMT400008759	Potato	cytosol	10.97	29.15
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.04	29.14
KRH08607	Soybean	cytosol	19.1	28.88
KRH48615	Soybean	mitochondrion	18.51	28.81
KRH09154	Soybean	mitochondrion	18.87	28.78
KRH08639	Soybean	mitochondrion, plastid	18.99	28.5
KRH08277	Soybean	plastid	18.99	28.4
KRH08671	Soybean	cytosol, mitochondrion	18.51	28.39
AT5G16640.1	Thale cress	mitochondrion	16.86	28.37
Bra026884.1-P	Field mustard	cytosol	15.33	28.32
PGSC0003DMT400008757	Potato	cytosol	16.63	28.31
KRH41817	Soybean	mitochondrion	18.51	28.29
KRH09121	Soybean	mitochondrion	17.81	28.28
Bra036649.1-P	Field mustard	cytosol	12.97	28.13
Bra027636.1-P	Field mustard	cytosol	10.73	28.09
KRH39050	Soybean	mitochondrion	17.57	28.01
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.4	27.95
CDX68679	Canola	cytosol	3.77	27.83
AT1G63330.2	Thale cress	cytosol	18.28	27.73
Solyc06g007740.1.1	Tomato	cytosol	19.22	27.63
PGSC0003DMT400025074	Potato	cytosol	17.92	27.54
Bra026882.1-P	Field mustard	cytosol	17.33	27.53
PGSC0003DMT400025067	Potato	cytosol	15.45	27.52
AT1G62670.1	Thale cress	mitochondrion	20.4	27.46
KRH09082	Soybean	cytosol	13.21	27.45
KRH08625	Soybean	plastid	18.63	27.43
VIT_14s0081g00270.t01	Wine grape	plastid	18.75	27.41
KRH40400	Soybean	plastid	18.63	27.38
Solyc06g007300.1.1	Tomato	extracellular	19.1	27.36
PGSC0003DMT400053185	Potato	mitochondrion	18.99	27.29
AT1G62914.1	Thale cress	mitochondrion	16.98	27.27
Bra021192.1-P	Field mustard	plastid	16.16	27.18
Bra006187.1-P	Field mustard	plastid	9.32	27.15
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.8	27.07
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.81	27.05
PGSC0003DMT400056663	Potato	plastid	18.75	27.04
KRH31646	Soybean	cytosol	16.51	27.03
PGSC0003DMT400056665	Potato	mitochondrion	18.75	26.99
PGSC0003DMT400008760	Potato	mitochondrion	18.63	26.96
AT1G12300.1	Thale cress	mitochondrion	20.17	26.84
AT1G63130.1	Thale cress	mitochondrion	19.93	26.83
Bra026971.1-P	Field mustard	mitochondrion	19.81	26.71
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.1	26.7
AT1G63400.1	Thale cress	cytosol, plastid	18.16	26.69
AT1G63070.1	Thale cress	mitochondrion	18.51	26.61
Bra016762.1-P	Field mustard	mitochondrion	18.99	26.52
KRH25652	Soybean	cytosol, golgi	16.86	26.48
AT1G63080.3	Thale cress	mitochondrion	19.1	26.38
VIT_14s0030g02280.t01	Wine grape	plastid	17.45	26.38
Bra028267.1-P	Field mustard	mitochondrion	19.46	26.36
VIT_14s0081g00280.t01	Wine grape	mitochondrion	19.81	26.29
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.93	26.24
AT1G62930.1	Thale cress	plastid	19.46	26.23
AT1G63150.1	Thale cress	mitochondrion	19.34	26.07
AT3G16710.1	Thale cress	mitochondrion	15.57	26.04
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.62	26.0
Bra026958.1-P	Field mustard	mitochondrion	19.46	25.9
PGSC0003DMT400052971	Potato	mitochondrion	18.04	25.8
AT1G62910.1	Thale cress	mitochondrion	19.22	25.79
Bra031731.1-P	Field mustard	mitochondrion	15.45	25.79
AT1G62720.1	Thale cress	mitochondrion	14.74	25.77
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.86	25.66
Bra026401.1-P	Field mustard	plastid	16.16	25.61
AT1G12700.2	Thale cress	cytosol	18.63	25.57
KRH09097	Soybean	plastid	17.57	25.56
AT1G62590.1	Thale cress	mitochondrion	19.1	25.55
Bra026954.1-P	Field mustard	mitochondrion	19.58	25.54
PGSC0003DMT400053556	Potato	mitochondrion	13.8	25.49
KRH09095	Soybean	plastid	17.57	25.47
Bra026957.1-P	Field mustard	mitochondrion	18.04	25.37
PGSC0003DMT400053182	Potato	cytosol	17.81	25.21
Solyc04g080120.1.1	Tomato	extracellular	18.16	25.16
Bra027029.1-P	Field mustard	mitochondrion	7.19	25.1
Bra036651.1-P	Field mustard	mitochondrion	15.8	25.05
AT5G41170.1	Thale cress	mitochondrion	15.21	24.48
PGSC0003DMT400015293	Potato	mitochondrion	17.57	24.43
PGSC0003DMT400015298	Potato	mitochondrion	17.57	24.43
AT1G64583.1	Thale cress	mitochondrion	14.74	24.41
AT1G64580.1	Thale cress	mitochondrion	14.74	23.9
AT1G62680.2	Thale cress	plastid	15.33	23.72
KRH08599	Soybean	cytosol, plastid	18.63	23.62
AT1G06580.1	Thale cress	mitochondrion	13.92	23.6
Bra027026.1-P	Field mustard	mitochondrion	14.5	23.52
AT4G26800.2	Thale cress	mitochondrion, plastid	13.8	22.76
AT1G64100.2	Thale cress	cytosol	20.75	21.84
Bra027726.1-P	Field mustard	mitochondrion	11.91	21.44
KRH09085	Soybean	mitochondrion	17.69	21.31
VIT_14s0030g02260.t01	Wine grape	cytosol	10.85	20.77
Bra027656.1-P	Field mustard	cytosol	22.17	19.98
KRH12873	Soybean	cytosol	15.21	18.53
KRH39064	Soybean	cytosol	20.28	17.75
Bra016758.1-P	Field mustard	plastid	19.1	13.98

Protein Annotations

EnsemblPlants:TraesCS1B01G071600.1	EnsemblPlantsGene:TraesCS1B01G071600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:56491183..56493829

Molecular Weight (calculated)

94279.3 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.025

Length

848 amino acids

Sequence
(BLAST)

001: MLRRIRISTP VIGGKKAPVR TPDADAPRHP HPPPSPPLPL LHLAGVRSPP PSPPLVRLHQ YRTTSTPMSR IHLHLHQHRR LFSSTSPPSR SWSPHEAFAA
101: ATERVRAGNF SWEDAHNLFD ELLRQATPVP GRSLNGFLAA LARAPASEAC RDGPALALAL FNHVCRDESG ARVAPPTIFT YGILMNCCCR AHRPDLGLAF
201: FGRLLRTGLK ADLIVANTLL KCLCRAKRTD EAVNVLLHRM SELGCVPDAF SYSIVLKSLC DNGMSQQALN LLHMMAKVGG GCSPDVVAYS TVIHGFFKEG
301: ETGKACNLFH EMMQQGVEPN VWTYSSIIDA LCKARAMDKA ELVLQQMVNK GVQPDNVTYN CMIHGYSTSG RWKEAVKLFR EMKSRGLIPD NFTCNSLMTY
401: LCKHGRSKEG AEFFDAMTAK GHRDVISYYI LLHGYANEEC FADMIDLFNS MERNGIAANC RVFNILINGY AKRGMTDEAM LIFTEMWEKG VSPNVVTYST
501: VIAALSRMGR LTDSMEKFNQ MIAMGIQPNT AVYHSLIQGC FMHGGLVKAK ELMFEMMNKG IPRPNIVFFS SVINSLCKEG RVMDAHAVFD LAIGIGERPN
601: VITFNSLIDG YCLVGKMDKA FKILHVMESV GVESDVVTYS ALLDGYFKNR RIDDALTLFR EMPRKRIKPN TVTYGIMLGG LFHAGRTVAA MKMFHEMIES
701: GATVRISTYN IILGGLCQTN CVDEAIALFQ KLRAMNVKFN IEIFNTMIDA MYKVQRKEEA KELFAAISGN GLVPNEYTYA VMIRNLLKGG AVEDADNMFS
801: SMDNSGIVPS SRLINDIIRM LLEKGKGNIW RILSCSLQSI NFLMDLVD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.