Factsheet for TraesCS6B01G045200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G089800.1	Wheat	mitochondrion	44.2	90.03
TraesCS6B01G021600.1	Wheat	mitochondrion	89.79	89.66
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	39.44	86.77
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	84.34	84.34
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	42.1	79.42
HORVU1Hr1G018190.2	Barley	cytosol	31.47	78.95
HORVU6Hr1G002890.6	Barley	cytosol, plastid	78.18	70.31
TraesCS6B01G114300.1	Wheat	cytosol	33.01	60.67
Os10t0497366-00	Rice	mitochondrion	31.47	56.11
Os10t0495100-01	Rice	cytosol, mitochondrion	35.1	54.45
Os08t0248400-01	Rice	mitochondrion	32.31	52.5
Os10t0495200-01	Rice	mitochondrion	56.78	51.92
Os10t0497300-01	Rice	mitochondrion	57.34	51.64
OQU88594	Sorghum	cytosol	37.48	51.34
Os10t0497432-01	Rice	mitochondrion	18.88	50.75
Os10t0501700-00	Rice	cytosol	31.89	50.22
Zm00001d018982_P001	Maize	mitochondrion	24.48	50.0
Os10t0499500-01	Rice	mitochondrion	35.1	49.6
Zm00001d009733_P001	Maize	cytosol	54.55	49.06
TraesCS2B01G126900.1	Wheat	cytosol	25.87	48.43
Os08t0107700-01	Rice	cytosol, mitochondrion	25.17	48.13
EER95949	Sorghum	mitochondrion	44.62	48.11
Os08t0107800-01	Rice	mitochondrion	41.4	47.44
KXG34536	Sorghum	mitochondrion	36.78	45.98
Os08t0110200-01	Rice	mitochondrion	51.05	45.74
TraesCS1B01G038400.1	Wheat	cytosol	38.18	44.9
TraesCS6B01G127200.1	Wheat	cytosol	21.26	44.19
TraesCS1B01G085400.1	Wheat	cytosol	38.32	42.75
TraesCS1B01G072700.1	Wheat	cytosol	30.49	42.75
TraesCS1B01G092600.1	Wheat	plastid	30.77	42.55
TraesCS2B01G560300.1	Wheat	cytosol	33.85	42.53
TraesCS1B01G075300.1	Wheat	cytosol	35.38	42.38
TraesCS2B01G559900.1	Wheat	cytosol	32.03	42.25
TraesCS1B01G072400.1	Wheat	cytosol	40.98	42.16
TraesCS1B01G038600.1	Wheat	cytosol	21.26	41.87
TraesCS1B01G084800.1	Wheat	cytosol	27.13	41.81
TraesCS1B01G039700.1	Wheat	cytosol	35.52	41.78
TraesCS1B01G073100.1	Wheat	cytosol	35.38	41.75
TraesCS2B01G560700.1	Wheat	plastid	44.76	41.5
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	29.23	41.39
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	25.31	41.23
TraesCS7B01G469500.1	Wheat	cytosol	32.31	41.1
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	24.76	40.88
TraesCS1B01G085900.1	Wheat	mitochondrion	46.43	40.79
TraesCS1B01G038500.1	Wheat	mitochondrion	45.03	40.76
TraesCS1B01G039100.1	Wheat	mitochondrion	44.62	40.74
TraesCS1B01G039200.1	Wheat	mitochondrion	44.06	40.18
TraesCS1B01G092500.1	Wheat	mitochondrion	43.92	40.1
Zm00001d009735_P001	Maize	cytosol	54.55	40.08
TraesCS1B01G038200.1	Wheat	mitochondrion	35.24	39.81
TraesCS1B01G085300.1	Wheat	mitochondrion	44.06	39.77
TraesCS1B01G073200.1	Wheat	cytosol	16.78	39.6
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	36.5	39.31
TraesCS6B01G127500.1	Wheat	cytosol	26.85	39.18
TraesCS6B01G341800.2	Wheat	cytosol	21.54	38.6
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	41.96	38.46
TraesCS1B01G072900.2	Wheat	mitochondrion	46.43	38.03
TraesCS1B01G086000.1	Wheat	plastid	35.94	37.46
TraesCS1B01G072300.1	Wheat	plastid	29.51	37.15
TraesCS1B01G315500.1	Wheat	mitochondrion	16.5	36.76
TraesCS1B01G071600.1	Wheat	mitochondrion	43.22	36.44
TraesCS1B01G038300.1	Wheat	plastid	27.69	36.26
Solyc06g007280.2.1	Tomato	cytosol	11.89	33.33
KRH39050	Soybean	mitochondrion	23.08	31.02
KRH40513	Soybean	plastid	14.96	30.48
Solyc06g005220.2.1	Tomato	cytosol	17.2	30.3
KRH39054	Soybean	cytosol	20.7	29.78
Bra027029.1-P	Field mustard	mitochondrion	10.07	29.63
KRH39004	Soybean	cytosol	20.56	29.58
Bra036649.1-P	Field mustard	cytosol	16.08	29.41
KRH39057	Soybean	cytosol	20.28	29.18
PGSC0003DMT400052977	Potato	cytosol	15.8	29.05
AT1G63330.2	Thale cress	cytosol	22.66	28.98
KRH39112	Soybean	cytosol	20.14	28.97
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	21.26	28.95
KRH31646	Soybean	cytosol	20.84	28.76
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.02	28.51
TraesCS6B01G129100.1	Wheat	cytosol, plastid	11.47	28.47
KRH41817	Soybean	mitochondrion	22.1	28.47
KRH39074	Soybean	cytosol	19.72	28.37
KRH39072	Soybean	cytosol	19.58	28.23
AT1G62930.1	Thale cress	plastid	24.34	27.66
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.44	27.52
KRH48615	Soybean	mitochondrion	20.98	27.52
VIT_14s0081g00110.t01	Wine grape	cytosol	18.88	27.49
Bra027636.1-P	Field mustard	cytosol	12.45	27.47
KRH08636	Soybean	cytosol	19.86	27.2
Bra026882.1-P	Field mustard	cytosol	20.14	26.97
VIT_14s0081g00120.t01	Wine grape	plastid	21.96	26.93
AT1G62910.1	Thale cress	mitochondrion	23.78	26.9
PGSC0003DMT400025074	Potato	cytosol	20.7	26.81
KRH09084	Soybean	plastid	19.16	26.81
Bra026884.1-P	Field mustard	cytosol	17.2	26.8
AT1G63070.1	Thale cress	mitochondrion	22.1	26.78
Solyc06g007740.1.1	Tomato	cytosol	22.1	26.78
KRH39066	Soybean	cytosol	20.7	26.67
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.46	26.67
KRH17148	Soybean	mitochondrion	20.28	26.61
AT1G63130.1	Thale cress	mitochondrion	23.36	26.51
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.94	26.49
Solyc06g007810.1.1	Tomato	cytosol	9.93	26.49
KRH08628	Soybean	plastid	20.42	26.45
AT1G63080.3	Thale cress	mitochondrion	22.66	26.38
KRH08607	Soybean	cytosol	20.7	26.38
VIT_14s0081g00270.t01	Wine grape	plastid	21.4	26.38
Bra036651.1-P	Field mustard	mitochondrion	19.72	26.36
AT1G62590.1	Thale cress	mitochondrion	23.36	26.34
AT1G62670.1	Thale cress	mitochondrion	23.08	26.19
AT1G62720.1	Thale cress	mitochondrion	17.76	26.19
AT1G63400.1	Thale cress	cytosol, plastid	21.12	26.17
Bra006187.1-P	Field mustard	plastid	10.63	26.12
Bra026971.1-P	Field mustard	mitochondrion	22.94	26.07
Bra027026.1-P	Field mustard	mitochondrion	19.02	26.0
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.34	26.0
AT5G16640.1	Thale cress	mitochondrion	18.32	25.99
AT1G62914.1	Thale cress	mitochondrion	19.16	25.95
PGSC0003DMT400008757	Potato	cytosol	18.04	25.9
Bra016762.1-P	Field mustard	mitochondrion	21.96	25.86
AT1G63150.1	Thale cress	mitochondrion	22.66	25.76
KRH08277	Soybean	plastid	20.42	25.75
Bra026958.1-P	Field mustard	mitochondrion	22.94	25.75
Solyc06g007300.1.1	Tomato	extracellular	21.26	25.68
KRH08639	Soybean	mitochondrion, plastid	20.28	25.66
AT3G16710.1	Thale cress	mitochondrion	18.18	25.64
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.24	25.6
KRH08671	Soybean	cytosol, mitochondrion	19.72	25.5
KRH40400	Soybean	plastid	20.56	25.48
PGSC0003DMT400025067	Potato	cytosol	16.92	25.42
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.3	25.41
Bra021192.1-P	Field mustard	plastid	17.9	25.4
PGSC0003DMT400008759	Potato	cytosol	11.33	25.39
KRH09154	Soybean	mitochondrion	19.72	25.36
CDX68679	Canola	cytosol	4.06	25.22
VIT_14s0030g02280.t01	Wine grape	plastid	19.72	25.13
PGSC0003DMT400056665	Potato	mitochondrion	20.7	25.13
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.38	25.04
AT1G62680.2	Thale cress	plastid	19.16	25.0
KRH08625	Soybean	plastid	20.14	25.0
AT1G12300.1	Thale cress	mitochondrion	22.24	24.96
Bra028267.1-P	Field mustard	mitochondrion	21.82	24.92
PGSC0003DMT400053185	Potato	mitochondrion	20.56	24.92
PGSC0003DMT400056663	Potato	plastid	20.42	24.83
KRH09121	Soybean	mitochondrion	18.46	24.72
KRH25652	Soybean	cytosol, golgi	18.6	24.63
Bra026954.1-P	Field mustard	mitochondrion	22.38	24.62
AT1G12700.2	Thale cress	cytosol	21.26	24.6
KRH09082	Soybean	cytosol	13.99	24.51
PGSC0003DMT400008760	Potato	mitochondrion	20.0	24.4
PGSC0003DMT400052971	Potato	mitochondrion	20.14	24.28
AT1G64580.1	Thale cress	mitochondrion	17.76	24.28
OQU88581	Sorghum	cytosol	36.64	24.1
PGSC0003DMT400015293	Potato	mitochondrion	20.56	24.1
PGSC0003DMT400015298	Potato	mitochondrion	20.56	24.1
AT1G64583.1	Thale cress	mitochondrion	17.2	24.02
Bra031731.1-P	Field mustard	mitochondrion	17.06	24.02
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.54	23.91
Solyc04g080120.1.1	Tomato	extracellular	20.42	23.86
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.36	23.83
Bra026957.1-P	Field mustard	mitochondrion	20.0	23.71
AT1G06580.1	Thale cress	mitochondrion	16.5	23.6
AT5G41170.1	Thale cress	mitochondrion	17.2	23.34
PGSC0003DMT400053556	Potato	mitochondrion	14.96	23.31
AT4G26800.2	Thale cress	mitochondrion, plastid	16.64	23.15
PGSC0003DMT400053182	Potato	cytosol	19.3	23.04
KRH09097	Soybean	plastid	18.32	22.47
Bra027726.1-P	Field mustard	mitochondrion	14.69	22.29
KRH09095	Soybean	plastid	18.04	22.05
KRH08599	Soybean	cytosol, plastid	20.42	21.82
Bra026401.1-P	Field mustard	plastid	16.08	21.5
AT1G64100.2	Thale cress	cytosol	23.92	21.22
VIT_14s0030g02260.t01	Wine grape	cytosol	12.87	20.77
KRH09085	Soybean	mitochondrion	18.46	18.75
KRH12873	Soybean	cytosol	18.04	18.53
Bra027656.1-P	Field mustard	cytosol	23.36	17.75
KRH39064	Soybean	cytosol	21.96	16.2
Bra016758.1-P	Field mustard	plastid	22.1	13.63

Protein Annotations

EnsemblPlants:TraesCS6B01G045200.1	EnsemblPlantsGene:TraesCS6B01G045200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:+:26861806..26863953

Molecular Weight (calculated)

79611.1 Da

IEP (calculated)

6.119

GRAVY (calculated)

0.012

Length

715 amino acids

Sequence
(BLAST)

001: MSRRVVPVGR RILEQNIKAR YHAGDIGTED ALHLFDELLQ DAGRSSIHAI NCLLTVVGRD CPALGVSLFN RVARSKVAPS SITYAILVDC CCRAGRQDLG
101: HTAMGHVIKM GFLADAIITF SHLLKAICAE NKTSYAMDIV LRIMPEFNCM PNIFSYNILF KGLCNEKRSQ EALELIQIMV EDGGCCRPDV VTYSTVIDGL
201: LKEGEVGKAY SLFCEMLRQG VSPDVVTCSS IISGMCKLHA MDKAEEVLQQ MLDRRILPDV ATYNSLVHGY YSLGQCEEVD RVLKEMSRNG VQPNIVTYNI
301: QMDYLCKSGR CAEARKIFDF MIGLGQKPDV TTYSVLLHGY AMEKSFHEMH CLIDLMVGNG ISPDHHVYNI LISAYAKEEM VGEVLHIFTK MRQQGLNPNV
401: VNYGAVINLL SSIGRMDDAM SQFSQMITEG LAPDVIVFNS LISGFCSCGK WEKVHELFSE MFDRGICPDT VFFNTVMDHL CKNGRVMEAQ DVFDLMVHMG
501: VKPFVRDYNT LIHGYCLVGK MDEGRKLLDN MFSIGSKPDD FTYSILIDGY SKKGRIDDAL IVIKEMLDGK VKPSIITFNI MIGALLKGGR KEEAKDLFDG
601: IWAKGLVPDV VTYSLMIQKL IEEGSLQESD DLFLSMEKNG CAADSRMLNA IVRSLLQKGE VPRAGTYLSK IDERRFTPEA STASLLTALV SGGKGQEYKE
701: LLPEKYHSFL EQGTG

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.