Factsheet for Os08t0107800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0107700-01	Rice	cytosol, mitochondrion	38.78	64.71
Os10t0497366-00	Rice	mitochondrion	39.1	60.85
Os10t0495100-01	Rice	cytosol, mitochondrion	44.87	60.74
Os10t0501700-00	Rice	cytosol	42.95	59.03
Os08t0248400-01	Rice	mitochondrion	41.03	58.18
Os10t0497432-01	Rice	mitochondrion	24.04	56.39
HORVU1Hr1G018190.2	Barley	cytosol	25.16	55.09
Os10t0499500-01	Rice	mitochondrion	44.07	54.35
Zm00001d018982_P001	Maize	mitochondrion	28.69	51.14
Os08t0110200-01	Rice	mitochondrion	62.82	49.12
Os10t0495200-01	Rice	mitochondrion	61.22	48.85
TraesCSU01G089700.1	Wheat	mitochondrion	37.5	48.55
Os10t0497300-01	Rice	mitochondrion	60.58	47.61
TraesCSU01G090200.1	Wheat	cytosol	33.49	47.29
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	24.36	46.77
TraesCSU01G089800.1	Wheat	mitochondrion	26.28	46.72
TraesCS6A01G015000.1	Wheat	mitochondrion	30.77	46.27
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	18.75	46.25
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	27.72	45.65
OQU82832	Sorghum	cytosol	20.03	43.71
TraesCS6D01G076500.1	Wheat	plastid	31.25	43.05
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	48.4	42.24
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	47.44	41.4
TraesCS6D01G047700.1	Wheat	mitochondrion	45.67	41.24
HORVU6Hr1G014310.1	Barley	mitochondrion	45.19	41.05
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	46.79	40.9
TraesCS6D01G017800.1	Wheat	cytosol	34.78	40.41
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	46.15	40.28
TraesCS6B01G021600.1	Wheat	mitochondrion	46.15	40.22
OQU82856	Sorghum	cytosol	48.08	39.89
Zm00001d009733_P001	Maize	cytosol	50.64	39.75
KXG27690	Sorghum	cytosol, plastid	45.67	38.99
OQU80148	Sorghum	mitochondrion	44.39	38.1
TraesCS6A01G083000.1	Wheat	cytosol	27.72	37.94
OQU82827	Sorghum	cytosol	47.76	37.39
OQU82823	Sorghum	cytosol	47.6	37.26
OQU82836	Sorghum	cytosol	36.54	37.25
HORVU6Hr1G002890.6	Barley	cytosol, plastid	47.28	37.11
TraesCS6D01G017700.1	Wheat	plastid	31.41	36.7
EES07882	Sorghum	cytosol	45.51	36.55
TraesCS6B01G114300.1	Wheat	cytosol	22.76	36.5
OQU82831	Sorghum	cytosol	35.42	36.05
TraesCS6A01G014600.1	Wheat	cytosol	22.44	35.44
KXG19780	Sorghum	cytosol	33.01	34.86
EES09203	Sorghum	cytosol	43.43	33.96
Zm00001d009735_P001	Maize	cytosol	50.48	32.37
KRH40513	Soybean	plastid	17.63	31.34
Os04t0349600-01	Rice	plastid	18.91	30.49
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	37.34	30.42
KRH39057	Soybean	cytosol	24.2	30.38
KRH39054	Soybean	cytosol	23.88	29.98
Bra036649.1-P	Field mustard	cytosol	18.75	29.92
KRH39074	Soybean	cytosol	23.72	29.78
VIT_12s0028g02320.t01	Wine grape	mitochondrion	22.6	29.56
KRH39072	Soybean	cytosol	23.4	29.44
Solyc06g007280.2.1	Tomato	cytosol	11.86	29.02
KRH39004	Soybean	cytosol	23.08	28.97
Bra027636.1-P	Field mustard	cytosol	14.9	28.7
AT1G63330.2	Thale cress	cytosol	25.64	28.62
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	24.04	28.57
KRH39112	Soybean	cytosol	22.76	28.57
OQU82833	Sorghum	cytosol	20.51	28.57
AT1G63400.1	Thale cress	cytosol, plastid	26.12	28.25
AT1G62720.1	Thale cress	mitochondrion	21.96	28.25
KRH39050	Soybean	mitochondrion	23.88	28.01
Solyc06g005220.2.1	Tomato	cytosol	18.11	27.83
OQU82834	Sorghum	cytosol	42.95	27.83
Bra027029.1-P	Field mustard	mitochondrion	10.74	27.57
KRH39066	Soybean	cytosol	24.36	27.39
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	22.12	27.33
KRH08636	Soybean	cytosol	22.76	27.2
AT1G62914.1	Thale cress	mitochondrion	22.76	26.89
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.19	26.42
KRH08277	Soybean	plastid	23.88	26.28
KRH48615	Soybean	mitochondrion	22.92	26.24
AT5G16640.1	Thale cress	mitochondrion	21.15	26.19
KRH41817	Soybean	mitochondrion	23.24	26.13
AT1G62910.1	Thale cress	mitochondrion	26.44	26.11
AT1G12620.1	Thale cress	cytosol, mitochondrion	25.96	26.09
KRH31646	Soybean	cytosol	21.63	26.06
KRH17148	Soybean	mitochondrion	22.76	26.05
Bra026882.1-P	Field mustard	cytosol	22.28	26.03
KRH09084	Soybean	plastid	21.31	26.03
AT1G62670.1	Thale cress	mitochondrion	26.12	25.87
Bra036651.1-P	Field mustard	mitochondrion	22.12	25.79
Bra006187.1-P	Field mustard	plastid	12.02	25.77
AT1G63070.1	Thale cress	mitochondrion	24.36	25.76
AT1G62930.1	Thale cress	plastid	25.96	25.76
AT1G63080.3	Thale cress	mitochondrion	25.32	25.73
KRH08628	Soybean	plastid	22.76	25.72
AT1G62590.1	Thale cress	mitochondrion	26.12	25.71
KRH08639	Soybean	mitochondrion, plastid	23.24	25.66
AT3G16710.1	Thale cress	mitochondrion	20.83	25.64
Bra021192.1-P	Field mustard	plastid	20.67	25.6
AT1G63130.1	Thale cress	mitochondrion	25.8	25.56
KRH08671	Soybean	cytosol, mitochondrion	22.6	25.5
VIT_14s0081g00110.t01	Wine grape	cytosol	20.03	25.46
KRH08607	Soybean	cytosol	22.76	25.31
Bra026884.1-P	Field mustard	cytosol	18.59	25.27
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.0	25.2
KRH25652	Soybean	cytosol, golgi	21.79	25.19
VIT_14s0030g02280.t01	Wine grape	plastid	22.6	25.13
KRH40400	Soybean	plastid	23.24	25.13
AT1G62680.2	Thale cress	plastid	21.96	25.0
KRH08625	Soybean	plastid	23.08	25.0
Os04t0351333-00	Rice	cytosol	35.1	24.91
AT1G64580.1	Thale cress	mitochondrion	20.83	24.86
AT1G12300.1	Thale cress	mitochondrion	25.32	24.8
VIT_14s0081g00120.t01	Wine grape	plastid	23.08	24.7
AT1G63150.1	Thale cress	mitochondrion	24.84	24.64
AT1G06580.1	Thale cress	mitochondrion	19.71	24.6
Bra026958.1-P	Field mustard	mitochondrion	25.0	24.49
Bra026971.1-P	Field mustard	mitochondrion	24.68	24.48
AT1G64583.1	Thale cress	mitochondrion	20.03	24.41
KRH09154	Soybean	mitochondrion	21.63	24.28
KRH09121	Soybean	mitochondrion	20.67	24.16
AT5G41170.1	Thale cress	mitochondrion	20.35	24.1
Bra027026.1-P	Field mustard	mitochondrion	20.03	23.9
Solyc06g007740.1.1	Tomato	cytosol	22.6	23.9
Bra016762.1-P	Field mustard	mitochondrion	23.24	23.89
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.91	23.84
PGSC0003DMT400008759	Potato	cytosol	12.18	23.82
Bra028267.1-P	Field mustard	mitochondrion	23.88	23.8
PGSC0003DMT400025074	Potato	cytosol	20.99	23.73
PGSC0003DMT400008757	Potato	cytosol	18.91	23.69
PGSC0003DMT400052977	Potato	cytosol	14.74	23.65
VIT_14s0081g00270.t01	Wine grape	plastid	21.79	23.45
Bra026836.1-P	Field mustard	cytosol, mitochondrion	18.43	23.42
AT1G12775.1	Thale cress	cytosol, mitochondrion	24.04	23.29
KRH09082	Soybean	cytosol	15.22	23.28
AT1G12700.2	Thale cress	cytosol	22.92	23.14
Bra026954.1-P	Field mustard	mitochondrion	24.04	23.08
Solyc06g007300.1.1	Tomato	extracellular	21.79	22.97
Solyc06g007810.1.1	Tomato	cytosol	9.78	22.76
PGSC0003DMT400025067	Potato	cytosol	17.31	22.69
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.08	22.54
Bra031731.1-P	Field mustard	mitochondrion	18.27	22.44
PGSC0003DMT400053185	Potato	mitochondrion	21.15	22.37
KRH09097	Soybean	plastid	20.83	22.3
Bra026957.1-P	Field mustard	mitochondrion	21.47	22.22
KRH09095	Soybean	plastid	20.83	22.22
AT4G26800.2	Thale cress	mitochondrion, plastid	18.27	22.18
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.23	22.1
PGSC0003DMT400015293	Potato	mitochondrion	21.47	21.97
PGSC0003DMT400015298	Potato	mitochondrion	21.47	21.97
PGSC0003DMT400056665	Potato	mitochondrion	20.67	21.9
Solyc04g080120.1.1	Tomato	extracellular	21.47	21.9
PGSC0003DMT400008760	Potato	mitochondrion	20.51	21.84
PGSC0003DMT400056663	Potato	plastid	20.51	21.77
Bra026401.1-P	Field mustard	plastid	18.59	21.68
Bra027726.1-P	Field mustard	mitochondrion	15.54	20.59
PGSC0003DMT400052971	Potato	mitochondrion	19.55	20.57
PGSC0003DMT400053182	Potato	cytosol	19.39	20.2
PGSC0003DMT400053556	Potato	mitochondrion	14.74	20.04
KRH08599	Soybean	cytosol, plastid	21.47	20.03
AT1G64100.2	Thale cress	cytosol	24.36	18.86
KRH09085	Soybean	mitochondrion	20.83	18.47
CDX68679	Canola	cytosol	3.37	18.26
VIT_14s0030g02260.t01	Wine grape	cytosol	12.66	17.83
Bra027656.1-P	Field mustard	cytosol	26.44	17.53
KRH12873	Soybean	cytosol	17.47	15.66
KRH39064	Soybean	cytosol	24.04	15.48
Bra016758.1-P	Field mustard	plastid	25.0	13.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:AK070902	ProteinID:BAD09394.1	ProteinID:BAT03469.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os08g0107800	EnsemblPlants:Os08t0107800-01
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat	UniProt:Q6ZD66	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000023ADEC	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os08t0107800-01)

Coordinates

chr8:-:381307..383986

Molecular Weight (calculated)

68476.8 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.078

Length

624 amino acids

Sequence
(BLAST)

001: MGVRGGGSAL GRAGASSSKR TKQGGRGGAK RTKQGGRQRA TEPGDAHQVF DRLLKRGDRA SIFDLNRALS DVARASPAVA ISLFNRMPRA GATSAAPNIA
101: TYGIVIGCCR RLGRLDLAFA TVGRVITTGL RMSPILFSPL LKGLCDRRRT SDAMDIVLRR MPELGCKPDL FSYTILLKGL CDDKTSQQAL DLLHIMADHK
201: GRCPLDVVAY TTVINGLLRE GQLDKAYSLF DAMLDRGPSP DVVTYSSIIS ALSKTQAMDK ATQVFTRMVK NGVMPDCIMY TSLVHGYCSS GKPKEAIGIF
301: KKMCRHGVEP DVVTYTALMD YLCKNGKSTE ARKIFDSLVK RGHKPDSTTY GTLLHGYATE GALVEMHDLL DLMMKKGMQL GHHIFNMIMG AYAKHNKVDE
401: ALLVFSNMRQ QGLNPDIVNY GTVLDILCTA GRVDDALSQF NSLKSEGLAP NIVVFTTLIH GLCTCDKWDK VEELAFEMID RGICLDTIFF NAIMGNLCKK
501: GRVIEAKNLF DLMVRIGIEP NTNTYNTLID GYCLDGKMDE AMKLLGVMVF NGVKPSDVTY NTIINGYSQN GRIEDGLTLL REMDGKGVNP GIVTYEMLLQ
601: GLFQAGRTVA AKELYLRMIK WDTV

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.