CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82833	Sorghum	cytosol	50.98	69.64
KXG27690	Sorghum	cytosol, plastid	80.56	67.44
OQU80148	Sorghum	mitochondrion	79.58	66.99
KXG19780	Sorghum	cytosol	62.91	65.14
OQU82831	Sorghum	cytosol	64.22	64.11
OQU82827	Sorghum	cytosol	79.25	60.85
OQU82823	Sorghum	cytosol	78.92	60.6
EES07882	Sorghum	cytosol	75.49	59.46
EES09203	Sorghum	cytosol	68.79	52.76
OQU82834	Sorghum	cytosol	75.65	48.08
OQU82832	Sorghum	cytosol	22.39	47.9
Os10t0495200-01	Rice	mitochondrion	56.7	44.37
Os10t0497300-01	Rice	mitochondrion	57.03	43.95
OQU82856	Sorghum	cytosol	52.45	42.69
Os10t0501700-00	Rice	cytosol	31.21	42.07
Os10t0497432-01	Rice	mitochondrion	17.81	40.98
Os08t0110200-01	Rice	mitochondrion	52.12	39.97
KXG35774	Sorghum	cytosol, mitochondrion	30.23	39.11
OQU88594	Sorghum	cytosol	32.35	37.93
Os08t0107800-01	Rice	mitochondrion	37.25	36.54
Os10t0495100-01	Rice	cytosol, mitochondrion	27.45	36.44
Os10t0497366-00	Rice	mitochondrion	23.69	36.16
KXG28799	Sorghum	plastid	43.79	35.26
EER95949	Sorghum	mitochondrion	35.62	32.88
Os08t0248400-01	Rice	mitochondrion	23.53	32.73
Os10t0499500-01	Rice	mitochondrion	26.63	32.21
KXG34536	Sorghum	mitochondrion	27.78	29.72
Os08t0107700-01	Rice	cytosol, mitochondrion	17.48	28.61
KRH39072	Soybean	cytosol	22.06	27.22
KRH39004	Soybean	cytosol	21.9	26.96
KRH39054	Soybean	cytosol	21.9	26.96
KRH39057	Soybean	cytosol	21.57	26.56
AT1G63330.2	Thale cress	cytosol	24.18	26.48
KRH39074	Soybean	cytosol	21.24	26.16
KRH39112	Soybean	cytosol	20.91	25.75
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.28	24.74
AT1G63070.1	Thale cress	mitochondrion	23.69	24.58
VIT_14s0081g00110.t01	Wine grape	cytosol	19.61	24.44
CDX68679	Canola	cytosol	4.58	24.35
KRH09084	Soybean	plastid	20.26	24.27
KRH31646	Soybean	cytosol	20.42	24.13
Solyc06g007810.1.1	Tomato	cytosol	10.46	23.88
Bra036649.1-P	Field mustard	cytosol	15.2	23.79
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.61	23.76
KRH39066	Soybean	cytosol	21.41	23.6
KRH08636	Soybean	cytosol	20.1	23.56
KRH48615	Soybean	mitochondrion	20.91	23.49
VIT_14s0081g00270.t01	Wine grape	plastid	22.22	23.45
KRH40513	Soybean	plastid	13.4	23.36
AT1G62590.1	Thale cress	mitochondrion	24.02	23.19
KRH25652	Soybean	cytosol, golgi	20.42	23.15
Bra026884.1-P	Field mustard	cytosol	17.32	23.09
PGSC0003DMT400008757	Potato	cytosol	18.79	23.09
Bra026882.1-P	Field mustard	cytosol	20.1	23.03
Bra031731.1-P	Field mustard	mitochondrion	19.12	23.03
AT1G63130.1	Thale cress	mitochondrion	23.69	23.02
VIT_14s0081g00120.t01	Wine grape	plastid	21.9	22.98
KRH08639	Soybean	mitochondrion, plastid	21.08	22.83
AT1G62930.1	Thale cress	plastid	23.2	22.58
KRH41817	Soybean	mitochondrion	20.42	22.52
AT1G63080.3	Thale cress	mitochondrion	22.55	22.48
KRH09121	Soybean	mitochondrion	19.61	22.47
PGSC0003DMT400052977	Potato	cytosol	14.22	22.36
KRH08628	Soybean	plastid	20.1	22.28
KRH08607	Soybean	cytosol	20.42	22.28
AT1G63150.1	Thale cress	mitochondrion	22.88	22.26
AT1G62670.1	Thale cress	mitochondrion	22.88	22.22
Bra027636.1-P	Field mustard	cytosol	11.76	22.22
KRH08277	Soybean	plastid	20.59	22.22
KRH17148	Soybean	mitochondrion	19.77	22.2
KRH40400	Soybean	plastid	20.91	22.18
KRH39050	Soybean	mitochondrion	19.28	22.18
AT1G62910.1	Thale cress	mitochondrion	22.88	22.15
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.61	22.1
KRH08671	Soybean	cytosol, mitochondrion	19.93	22.06
Bra026958.1-P	Field mustard	mitochondrion	22.71	21.82
Bra026971.1-P	Field mustard	mitochondrion	22.39	21.78
KRH09154	Soybean	mitochondrion	19.77	21.76
KRH08625	Soybean	plastid	20.42	21.7
Solyc06g005220.2.1	Tomato	cytosol	14.38	21.67
AT1G12300.1	Thale cress	mitochondrion	22.39	21.51
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.3	21.33
AT1G63400.1	Thale cress	cytosol, plastid	20.1	21.32
KRH09082	Soybean	cytosol	14.05	21.08
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.9	20.97
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.24	20.93
KRH09097	Soybean	plastid	19.93	20.93
Bra026954.1-P	Field mustard	mitochondrion	22.22	20.92
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.08	20.84
AT1G62914.1	Thale cress	mitochondrion	17.97	20.83
PGSC0003DMT400025074	Potato	cytosol	18.79	20.83
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.83	20.81
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.9	20.81
Solyc06g007300.1.1	Tomato	extracellular	20.1	20.78
Bra016762.1-P	Field mustard	mitochondrion	20.59	20.76
Bra028267.1-P	Field mustard	mitochondrion	21.08	20.61
PGSC0003DMT400025067	Potato	cytosol	16.01	20.59
KRH09095	Soybean	plastid	19.44	20.34
Solyc06g007740.1.1	Tomato	cytosol	19.61	20.34
PGSC0003DMT400008759	Potato	cytosol	10.46	20.06
AT1G12700.2	Thale cress	cytosol	20.1	19.9
PGSC0003DMT400015293	Potato	mitochondrion	19.77	19.84
PGSC0003DMT400015298	Potato	mitochondrion	19.77	19.84
PGSC0003DMT400008760	Potato	mitochondrion	18.95	19.8
AT1G62720.1	Thale cress	mitochondrion	15.69	19.79
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.85	19.76
Bra026957.1-P	Field mustard	mitochondrion	19.44	19.73
Bra021192.1-P	Field mustard	plastid	16.18	19.64
OQU88581	Sorghum	cytosol	34.8	19.6
KRH08599	Soybean	cytosol, plastid	21.41	19.58
PGSC0003DMT400056665	Potato	mitochondrion	18.79	19.52
AT1G64580.1	Thale cress	mitochondrion	16.5	19.31
AT5G16640.1	Thale cress	mitochondrion	15.85	19.25
Bra006187.1-P	Field mustard	plastid	9.15	19.24
PGSC0003DMT400056663	Potato	plastid	18.46	19.22
Solyc04g080120.1.1	Tomato	extracellular	19.12	19.12
VIT_14s0030g02280.t01	Wine grape	plastid	17.48	19.07
PGSC0003DMT400052971	Potato	mitochondrion	18.46	19.06
PGSC0003DMT400053185	Potato	mitochondrion	18.3	18.98
AT3G16710.1	Thale cress	mitochondrion	15.52	18.74
AT1G64583.1	Thale cress	mitochondrion	15.52	18.55
AT1G62680.2	Thale cress	plastid	16.34	18.25
PGSC0003DMT400053182	Potato	cytosol	17.81	18.2
AT1G64100.2	Thale cress	cytosol	23.86	18.11
Bra036651.1-P	Field mustard	mitochondrion	15.69	17.94
Bra027026.1-P	Field mustard	mitochondrion	15.03	17.59
Solyc06g007280.2.1	Tomato	cytosol	7.19	17.25
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.4	17.19
KRH09085	Soybean	mitochondrion	19.77	17.19
AT5G41170.1	Thale cress	mitochondrion	14.54	16.89
Bra027029.1-P	Field mustard	mitochondrion	6.54	16.46
AT1G06580.1	Thale cress	mitochondrion	13.4	16.4
Bra027656.1-P	Field mustard	cytosol	24.67	16.05
Bra026401.1-P	Field mustard	plastid	13.73	15.7
VIT_14s0030g02260.t01	Wine grape	cytosol	11.11	15.35
AT4G26800.2	Thale cress	mitochondrion, plastid	12.75	15.18
Bra027726.1-P	Field mustard	mitochondrion	11.44	14.86
KRH12873	Soybean	cytosol	16.67	14.66
PGSC0003DMT400053556	Potato	mitochondrion	10.95	14.6
KRH39064	Soybean	cytosol	22.55	14.24
Bra016758.1-P	Field mustard	plastid	21.9	11.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1Z5RHJ8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU82836	ProteinID:OQU82836	ProteinID:OQU82836.1	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3005G028200	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8B9849	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:2515487..2517618

Molecular Weight (calculated)

68927.9 Da

IEP (calculated)

5.716

GRAVY (calculated)

-0.007

Length

612 amino acids

Sequence
(BLAST)

001: MVRECSDKVA PDRCTYSILI GCFCRMGRLE HGFAVFGLIL KTGWRVNHIV FNQLLKGLCD AKRLDEATNI LLWRMPEFGC TPNVVSYNTL VKGFCNENRA
101: EEALELLHVM ADDQGLSCPP DVVSYNTVIN GFFREGQVDK AYNLFLQMID RGIPPDVVTY NTVIDGLCKA QVVDRAKAVF QQMLDKGVKP SNGTYNCLIH
201: GYLSTGKWKE AMIDEAVCIF DKMRQQGLSP NVVNYGALID ALCKLGRVDD AILKFNQMIN EGATPDIFIF SSLVYGLCTV EKWEKAEELV FEMLDQGIRL
301: DVVVFNTLMC DLCREGRVME AQRLIELMLR VGVRPDVISY NTLVDGHCLT GRTDEAAKLL DVMVSIGLKP NEFTYNTLLH GYCKARRIDD AYSLLREMLM
401: NGPTPDVVTY NTILHGLFQT GRFSEAKELY LNMINSRTQW DMYTYNIILN GLCKNNCVDE AFKMFQSLCS KGLQLHIITF NIMIGALLKG GKKEDAMDLF
501: ATISAYGLVP DVETYCLIAE NLIKEGSLEE LGVLFSAMEE NGTAPNSRML NALVRRFLHR GDISRAGAYL SKLDEKNFSL EASTASMLIS LYSRGEYQQL
601: AKSLPEKYRF PH

Best Arabidopsis Sequence Match ( AT1G63130.1 )
(BLAST)

001: MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV
101: ISLGEQMQNL GISHNLYTYS ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM GYQPDSFTFN TLIHGLFRHN
201: RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
301: LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN
401: TLIKGFCKAK RVDEGMELFR EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG KVETALVVFE YLQRSKMEPD
501: IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
601: RFVGDASTIG LVTNMLHDGR LDKSFLKMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63130, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.