CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82833	Sorghum	cytosol	69.82	95.54
OQU82836	Sorghum	cytosol	64.11	64.22
OQU80148	Sorghum	mitochondrion	71.61	60.39
KXG27690	Sorghum	cytosol, plastid	71.29	59.78
OQU82827	Sorghum	cytosol	77.65	59.72
OQU82823	Sorghum	cytosol	77.49	59.6
EES07882	Sorghum	cytosol	73.41	57.92
KXG19780	Sorghum	cytosol	55.63	57.7
Os10t0501700-00	Rice	cytosol	39.48	53.3
EES09203	Sorghum	cytosol	63.3	48.62
OQU82834	Sorghum	cytosol	74.39	47.35
Os10t0497366-00	Rice	mitochondrion	29.36	44.89
Os10t0495200-01	Rice	mitochondrion	55.3	43.35
Os10t0497300-01	Rice	mitochondrion	55.63	42.95
KXG35774	Sorghum	cytosol, mitochondrion	33.12	42.92
OQU82856	Sorghum	cytosol	50.08	40.82
Os08t0110200-01	Rice	mitochondrion	52.37	40.23
Os08t0107800-01	Rice	mitochondrion	36.05	35.42
KXG28799	Sorghum	plastid	43.39	35.0
OQU82832	Sorghum	cytosol	16.31	34.97
Os10t0495100-01	Rice	cytosol, mitochondrion	25.77	34.27
KXG34536	Sorghum	mitochondrion	30.83	33.04
OQU88594	Sorghum	cytosol	27.9	32.76
EER95949	Sorghum	mitochondrion	34.58	31.98
Os10t0499500-01	Rice	mitochondrion	26.1	31.62
Os08t0248400-01	Rice	mitochondrion	22.51	31.36
Solyc06g007280.2.1	Tomato	cytosol	12.23	29.41
Bra027636.1-P	Field mustard	cytosol	15.17	28.7
Bra027029.1-P	Field mustard	mitochondrion	11.26	28.4
PGSC0003DMT400052977	Potato	cytosol	17.62	27.76
PGSC0003DMT400008759	Potato	cytosol	14.36	27.59
VIT_14s0081g00110.t01	Wine grape	cytosol	22.02	27.49
KRH09082	Soybean	cytosol	18.27	27.45
KRH39057	Soybean	cytosol	22.19	27.36
Solyc06g005220.2.1	Tomato	cytosol	18.11	27.34
KRH39072	Soybean	cytosol	22.02	27.22
KRH39054	Soybean	cytosol	22.02	27.16
KRH39004	Soybean	cytosol	21.86	26.96
Solyc06g007810.1.1	Tomato	cytosol	11.75	26.87
Bra026884.1-P	Field mustard	cytosol	20.07	26.8
KRH39074	Soybean	cytosol	21.37	26.36
Bra006187.1-P	Field mustard	plastid	12.4	26.12
KRH39112	Soybean	cytosol	20.39	25.15
Os08t0107700-01	Rice	cytosol, mitochondrion	15.17	24.87
OQU88581	Sorghum	cytosol	44.05	24.84
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.39	24.75
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.25	24.74
CDX68679	Canola	cytosol	4.57	24.35
KRH08636	Soybean	cytosol	20.55	24.14
KRH39066	Soybean	cytosol	21.53	23.78
KRH31646	Soybean	cytosol	20.07	23.75
KRH09084	Soybean	plastid	19.74	23.68
Bra036649.1-P	Field mustard	cytosol	15.01	23.53
VIT_14s0081g00120.t01	Wine grape	plastid	22.35	23.5
AT1G63330.2	Thale cress	cytosol	21.37	23.43
KRH40513	Soybean	plastid	13.38	23.36
KRH48615	Soybean	mitochondrion	20.72	23.3
KRH41817	Soybean	mitochondrion	21.04	23.24
KRH08607	Soybean	cytosol	21.21	23.17
KRH25652	Soybean	cytosol, golgi	20.39	23.15
KRH39050	Soybean	mitochondrion	20.07	23.12
KRH08277	Soybean	plastid	21.21	22.93
PGSC0003DMT400008757	Potato	cytosol	18.6	22.89
KRH08628	Soybean	plastid	20.55	22.83
VIT_14s0030g02260.t01	Wine grape	cytosol	16.48	22.8
PGSC0003DMT400025067	Potato	cytosol	17.62	22.69
VIT_14s0081g00270.t01	Wine grape	plastid	21.21	22.41
KRH08625	Soybean	plastid	21.04	22.4
KRH08639	Soybean	mitochondrion, plastid	20.55	22.3
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.09	22.29
KRH09121	Soybean	mitochondrion	19.41	22.28
KRH08671	Soybean	cytosol, mitochondrion	20.07	22.24
KRH40400	Soybean	plastid	20.88	22.18
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.78	22.02
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.13	22.01
KRH17148	Soybean	mitochondrion	19.41	21.83
AT3G16710.1	Thale cress	mitochondrion	17.94	21.7
KRH09154	Soybean	mitochondrion	19.58	21.58
Solyc06g007740.1.1	Tomato	cytosol	20.72	21.53
AT5G16640.1	Thale cress	mitochondrion	17.62	21.43
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.19	21.28
KRH09095	Soybean	plastid	20.23	21.2
PGSC0003DMT400025074	Potato	cytosol	19.09	21.2
Bra026882.1-P	Field mustard	cytosol	18.43	21.16
KRH09097	Soybean	plastid	20.07	21.1
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.6	20.99
Bra031731.1-P	Field mustard	mitochondrion	17.29	20.87
PGSC0003DMT400056665	Potato	mitochondrion	19.9	20.71
AT1G63080.3	Thale cress	mitochondrion	20.72	20.68
PGSC0003DMT400008760	Potato	mitochondrion	19.74	20.65
Solyc06g007300.1.1	Tomato	extracellular	19.9	20.61
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.72	20.52
Bra026971.1-P	Field mustard	mitochondrion	21.04	20.51
AT1G62590.1	Thale cress	mitochondrion	21.21	20.5
AT1G62670.1	Thale cress	mitochondrion	21.04	20.48
Bra026954.1-P	Field mustard	mitochondrion	21.7	20.46
Bra021192.1-P	Field mustard	plastid	16.8	20.44
Bra026958.1-P	Field mustard	mitochondrion	21.21	20.41
AT1G12700.2	Thale cress	cytosol	20.55	20.39
PGSC0003DMT400052971	Potato	mitochondrion	19.58	20.24
PGSC0003DMT400053185	Potato	mitochondrion	19.41	20.17
AT1G63130.1	Thale cress	mitochondrion	20.72	20.16
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.39	20.13
Bra016762.1-P	Field mustard	mitochondrion	19.9	20.1
AT1G62930.1	Thale cress	plastid	20.55	20.03
AT1G63070.1	Thale cress	mitochondrion	19.25	20.0
AT1G12300.1	Thale cress	mitochondrion	20.72	19.94
Solyc04g080120.1.1	Tomato	extracellular	19.9	19.93
AT1G63400.1	Thale cress	cytosol, plastid	18.76	19.93
KRH08599	Soybean	cytosol, plastid	21.7	19.88
PGSC0003DMT400015293	Potato	mitochondrion	19.74	19.84
PGSC0003DMT400015298	Potato	mitochondrion	19.74	19.84
Bra036651.1-P	Field mustard	mitochondrion	17.29	19.81
AT1G62720.1	Thale cress	mitochondrion	15.66	19.79
AT5G41170.1	Thale cress	mitochondrion	16.97	19.73
PGSC0003DMT400056663	Potato	plastid	18.92	19.73
AT1G62680.2	Thale cress	plastid	17.62	19.71
VIT_14s0030g02280.t01	Wine grape	plastid	17.94	19.61
Bra026957.1-P	Field mustard	mitochondrion	19.25	19.57
AT1G63150.1	Thale cress	mitochondrion	20.07	19.55
AT1G64580.1	Thale cress	mitochondrion	16.64	19.5
Bra027026.1-P	Field mustard	mitochondrion	16.64	19.5
AT1G62910.1	Thale cress	mitochondrion	20.07	19.46
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.39	19.41
AT1G62914.1	Thale cress	mitochondrion	16.64	19.32
Bra028267.1-P	Field mustard	mitochondrion	19.58	19.17
PGSC0003DMT400053182	Potato	cytosol	18.43	18.86
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.01	18.74
AT1G64583.1	Thale cress	mitochondrion	15.33	18.36
KRH09085	Soybean	mitochondrion	20.55	17.9
AT1G06580.1	Thale cress	mitochondrion	14.52	17.8
AT4G26800.2	Thale cress	mitochondrion, plastid	14.85	17.7
PGSC0003DMT400053556	Potato	mitochondrion	13.21	17.65
Bra026401.1-P	Field mustard	plastid	14.68	16.82
AT1G64100.2	Thale cress	cytosol	21.53	16.38
Os10t0497432-01	Rice	mitochondrion	7.01	16.17
Bra027656.1-P	Field mustard	cytosol	24.8	16.15
Bra027726.1-P	Field mustard	mitochondrion	12.23	15.92
KRH12873	Soybean	cytosol	17.78	15.66
KRH39064	Soybean	cytosol	22.84	14.45
Bra016758.1-P	Field mustard	plastid	19.74	10.44

Protein Annotations

EnsemblPlants:OQU82831	EnsemblPlantsGene:SORBI_3005G027600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:OQU82831	ProteinID:OQU82831.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000B8BA80F	UniProt:A0A1Z5RH28	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr5:+:2441699..2443540

Molecular Weight (calculated)

68841.3 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.053

Length

613 amino acids

Sequence
(BLAST)

001: MADDHGRRCP PNVVSYSIVI NGFFTEGQVD KPYNLFLEMI DRGIPPDVVT YTTVIDGLCK AQLFDRAEGV FQQMIDNGFK PNNYTYNCLI HGYLSIGKWK
101: EVVQMLEEMS ARGLKPDCYT YGSLLNYLCK NGRCREARFF FDSMIRKGIK PKVSTYGILI HGYATKGALS EMHSFLDLMV ENGLSPDHHI FNIFFSAYAK
201: CGMIDKAMDI FNKMRQHGLS PNVVNYGALI DALCKLGRVD DAEVKFNQMI NEGVTPNIVV FNSLVYGLCT VDKWERAEEL VYEMLDQGIC PNAVFFNTLI
301: CNLCNVGRVM EGRRLIDLME HVGVRPDAFS YTPLISGYCL TGRTDEAEKV FDGMVSIGLS PTEVTYNTLL HGYCSASRID DAYCLFREML RKGVTPGVVT
401: YNTILHGLFQ TKRFSEAKEL YLNMINSGTK CDIYTYNIIL NGLCKSNCVD EAFKMFQSLC SKGLQLNIIT FTIMIGALLK GGRKEDAMDL FAAIPANGLV
501: PNVVTYRLVA ENLIEEGSLE EFDSLFSAME KNGTAPNSQM LNALVRRLLH RGDISRAGAY LSKLDERNFS VEASTTSLLM SIFTSDEYQH HAKSLPEKYH
601: FLNEANSSAL IKK

Best Arabidopsis Sequence Match ( AT1G63130.1 )
(BLAST)

001: MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV
101: ISLGEQMQNL GISHNLYTYS ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM GYQPDSFTFN TLIHGLFRHN
201: RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
301: LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN
401: TLIKGFCKAK RVDEGMELFR EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG KVETALVVFE YLQRSKMEPD
501: IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
601: RFVGDASTIG LVTNMLHDGR LDKSFLKMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63130, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.