CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0497432-01	Rice	mitochondrion	34.97	37.59
Os08t0248400-01	Rice	mitochondrion	50.0	32.5
Os08t0107700-01	Rice	cytosol, mitochondrion	41.26	31.55
OQU82823	Sorghum	cytosol	82.87	29.74
OQU82827	Sorghum	cytosol	82.87	29.74
Os10t0495100-01	Rice	cytosol, mitochondrion	46.5	28.85
KXG27690	Sorghum	cytosol, plastid	72.03	28.18
Os10t0499500-01	Rice	mitochondrion	47.2	26.68
EES07882	Sorghum	cytosol	71.33	26.25
OQU88594	Sorghum	cytosol	47.2	25.86
OQU82856	Sorghum	cytosol	67.83	25.8
OQU82834	Sorghum	cytosol	85.31	25.34
OQU80148	Sorghum	mitochondrion	62.24	24.48
EES09203	Sorghum	cytosol	63.29	22.68
EER95949	Sorghum	mitochondrion	52.45	22.62
OQU82836	Sorghum	cytosol	47.9	22.39
Os10t0497366-00	Rice	mitochondrion	30.77	21.95
Os08t0107800-01	Rice	mitochondrion	43.71	20.03
KXG19780	Sorghum	cytosol	40.21	19.46
KXG34536	Sorghum	mitochondrion	38.11	19.06
KRH40513	Soybean	plastid	23.08	18.8
Os10t0495200-01	Rice	mitochondrion	50.0	18.29
Os10t0497300-01	Rice	mitochondrion	50.0	18.01
KXG28799	Sorghum	plastid	44.06	16.58
AT1G62914.1	Thale cress	mitochondrion	30.42	16.48
OQU82831	Sorghum	cytosol	34.97	16.31
Solyc06g007280.2.1	Tomato	cytosol	13.64	15.29
AT5G16640.1	Thale cress	mitochondrion	26.92	15.28
Bra021192.1-P	Field mustard	plastid	26.92	15.28
AT1G63400.1	Thale cress	cytosol, plastid	30.77	15.25
AT1G63070.1	Thale cress	mitochondrion	30.77	14.92
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.83	14.88
KRH39072	Soybean	cytosol	25.52	14.72
Os08t0110200-01	Rice	mitochondrion	40.91	14.66
Bra036651.1-P	Field mustard	mitochondrion	27.27	14.58
Bra036649.1-P	Field mustard	cytosol	19.93	14.58
KRH39054	Soybean	cytosol	25.17	14.49
KRH09084	Soybean	plastid	25.87	14.48
KRH39050	Soybean	mitochondrion	26.92	14.47
AT1G63080.3	Thale cress	mitochondrion	30.77	14.33
AT1G62670.1	Thale cress	mitochondrion	31.47	14.29
KRH08277	Soybean	plastid	28.32	14.29
KRH39004	Soybean	cytosol	24.83	14.29
KRH39057	Soybean	cytosol	24.83	14.29
AT1G63130.1	Thale cress	mitochondrion	31.12	14.13
KRH39074	Soybean	cytosol	24.48	14.08
KRH39112	Soybean	cytosol	24.48	14.08
KRH41817	Soybean	mitochondrion	27.27	14.05
Bra026882.1-P	Field mustard	cytosol	26.22	14.04
AT1G62930.1	Thale cress	plastid	30.77	13.99
AT1G64580.1	Thale cress	mitochondrion	25.52	13.96
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.52	13.9
Bra026971.1-P	Field mustard	mitochondrion	30.42	13.83
AT1G06580.1	Thale cress	mitochondrion	24.13	13.8
AT1G63330.2	Thale cress	cytosol	26.92	13.77
KRH48615	Soybean	mitochondrion	26.22	13.76
Bra016762.1-P	Field mustard	mitochondrion	29.02	13.67
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	24.13	13.66
KRH08639	Soybean	mitochondrion, plastid	26.92	13.63
AT1G62720.1	Thale cress	mitochondrion	23.08	13.61
KRH08636	Soybean	cytosol	24.83	13.6
KRH39066	Soybean	cytosol	26.22	13.51
AT1G12300.1	Thale cress	mitochondrion	30.07	13.5
AT1G62910.1	Thale cress	mitochondrion	29.72	13.45
Bra028267.1-P	Field mustard	mitochondrion	29.37	13.42
AT3G16710.1	Thale cress	mitochondrion	23.78	13.41
AT3G22470.1	Thale cress	cytosol, mitochondrion	29.02	13.41
AT1G62590.1	Thale cress	mitochondrion	29.72	13.41
KRH08628	Soybean	plastid	25.87	13.41
KRH17148	Soybean	mitochondrion	25.52	13.39
Bra026954.1-P	Field mustard	mitochondrion	30.42	13.38
KRH08671	Soybean	cytosol, mitochondrion	25.87	13.38
KRH08607	Soybean	cytosol	26.22	13.37
AT1G63150.1	Thale cress	mitochondrion	29.37	13.35
AT1G12775.1	Thale cress	cytosol, mitochondrion	30.07	13.35
AT1G64583.1	Thale cress	mitochondrion	23.78	13.28
Bra026958.1-P	Field mustard	mitochondrion	29.02	13.03
KRH09095	Soybean	plastid	26.57	12.99
KRH09121	Soybean	mitochondrion	24.13	12.92
Bra026401.1-P	Field mustard	plastid	24.13	12.9
AT1G12620.1	Thale cress	cytosol, mitochondrion	27.97	12.88
VIT_14s0030g02280.t01	Wine grape	plastid	25.17	12.83
KRH09097	Soybean	plastid	25.87	12.69
KRH40400	Soybean	plastid	25.52	12.65
Bra027026.1-P	Field mustard	mitochondrion	23.08	12.62
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.98	12.58
KRH09154	Soybean	mitochondrion	24.13	12.41
Bra027658.1-P	Field mustard	cytosol, mitochondrion	23.43	12.34
AT1G62680.2	Thale cress	plastid	23.43	12.23
KRH31646	Soybean	cytosol	22.03	12.16
KRH08625	Soybean	plastid	24.48	12.15
VIT_14s0081g00270.t01	Wine grape	plastid	24.48	12.07
AT5G41170.1	Thale cress	mitochondrion	22.03	11.95
VIT_14s0081g00120.t01	Wine grape	plastid	24.13	11.84
Bra031731.1-P	Field mustard	mitochondrion	20.98	11.81
Bra026957.1-P	Field mustard	mitochondrion	24.83	11.77
Solyc06g007740.1.1	Tomato	cytosol	24.13	11.69
AT4G26800.2	Thale cress	mitochondrion, plastid	20.98	11.67
AT1G12700.2	Thale cress	cytosol	25.17	11.65
KRH25652	Soybean	cytosol, golgi	21.68	11.48
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.52	11.42
Solyc06g007300.1.1	Tomato	extracellular	23.43	11.32
PGSC0003DMT400053185	Potato	mitochondrion	22.73	11.02
PGSC0003DMT400056665	Potato	mitochondrion	22.38	10.87
PGSC0003DMT400015293	Potato	mitochondrion	23.08	10.82
PGSC0003DMT400015298	Potato	mitochondrion	23.08	10.82
Bra027636.1-P	Field mustard	cytosol	12.24	10.8
Os10t0501700-00	Rice	cytosol	17.13	10.79
KRH08599	Soybean	cytosol, plastid	25.17	10.76
PGSC0003DMT400056663	Potato	plastid	22.03	10.71
PGSC0003DMT400025074	Potato	cytosol	20.63	10.69
Solyc04g080120.1.1	Tomato	extracellular	22.73	10.62
Bra027726.1-P	Field mustard	mitochondrion	17.48	10.62
AT1G64100.2	Thale cress	cytosol	29.37	10.42
PGSC0003DMT400008760	Potato	mitochondrion	20.98	10.24
PGSC0003DMT400052971	Potato	mitochondrion	20.98	10.12
KRH09085	Soybean	mitochondrion	24.83	10.09
Bra027656.1-P	Field mustard	cytosol	32.87	9.99
PGSC0003DMT400008757	Potato	cytosol	17.13	9.84
Bra026884.1-P	Field mustard	cytosol	15.73	9.8
PGSC0003DMT400053556	Potato	mitochondrion	15.73	9.8
VIT_14s0081g00110.t01	Wine grape	cytosol	16.78	9.78
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.43	9.57
PGSC0003DMT400053182	Potato	cytosol	19.93	9.52
KRH09082	Soybean	cytosol	12.59	8.82
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.04	8.69
KXG35774	Sorghum	cytosol, mitochondrion	14.34	8.67
PGSC0003DMT400025067	Potato	cytosol	13.99	8.4
KRH39064	Soybean	cytosol	26.92	7.95
KRH12873	Soybean	cytosol	19.23	7.9
Solyc06g005220.2.1	Tomato	cytosol	10.84	7.64
PGSC0003DMT400052977	Potato	cytosol	10.14	7.46
Bra016758.1-P	Field mustard	plastid	30.07	7.42
Bra027029.1-P	Field mustard	mitochondrion	5.94	7.0
OQU88581	Sorghum	cytosol	21.33	5.61
Bra006187.1-P	Field mustard	plastid	4.9	4.81
PGSC0003DMT400008759	Potato	cytosol	3.5	3.13
VIT_14s0030g02260.t01	Wine grape	cytosol	3.85	2.48
CDX68679	Canola	cytosol	0.0	0.0
OQU82833	Sorghum	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:OQU82832	EnsemblPlantsGene:SORBI_3005G027680	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:OQU82832	ProteinID:OQU82832.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000B8BA49B	UniProt:A0A1Z5RGE5	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr5:+:2454155..2455057

Molecular Weight (calculated)

32107.4 Da

IEP (calculated)

8.380

GRAVY (calculated)

0.016

Length

286 amino acids

Sequence
(BLAST)

001: MPRCVSTVRD RCLELERIIA ARARSGSLGL DDALKLFDEL LIHARPASVV AFNQILNAVS QSELVVSLFN RMVRECSIKV APNTCTYSIL IGCLCRMGRL
101: KHSFATFGLI LKTGWRVNDI VINQLLKGLC DGKRVGEAMD VLLQRMPELG CTPDTVSYSI LLKGFCNENR AEEALELLRM MANDHGRSCP PNVVTYTTVI
201: DGLCKAQLFD RAEGVFQQMI DNGVKPNNDT YNCLIHGYLS IGKWKEVVQM LEKMSARGLK PDCYTYGSLL NYLCKNGRCR EARFFF

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.