CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27690	Sorghum	cytosol, plastid	90.51	90.01
OQU82836	Sorghum	cytosol	66.99	79.58
KXG19780	Sorghum	cytosol	64.24	79.02
OQU82833	Sorghum	cytosol	45.67	74.11
OQU82831	Sorghum	cytosol	60.39	71.61
OQU82823	Sorghum	cytosol	74.42	67.88
OQU82827	Sorghum	cytosol	74.42	67.88
EES07882	Sorghum	cytosol	71.39	66.8
OQU82832	Sorghum	cytosol	24.48	62.24
EES09203	Sorghum	cytosol	65.2	59.4
OQU82856	Sorghum	cytosol	52.68	50.93
OQU82834	Sorghum	cytosol	67.4	50.88
Os10t0495200-01	Rice	mitochondrion	53.37	49.62
Os10t0497300-01	Rice	mitochondrion	53.51	48.99
Os10t0501700-00	Rice	cytosol	29.85	47.8
Os10t0497366-00	Rice	mitochondrion	25.31	45.89
Os08t0110200-01	Rice	mitochondrion	50.21	45.74
Os10t0495100-01	Rice	cytosol, mitochondrion	28.47	44.9
Os08t0107800-01	Rice	mitochondrion	38.1	44.39
Os08t0248400-01	Rice	mitochondrion	26.0	42.95
KXG35774	Sorghum	cytosol, mitochondrion	27.65	42.49
Os10t0499500-01	Rice	mitochondrion	29.02	41.7
OQU88594	Sorghum	cytosol	29.71	41.38
EER95949	Sorghum	mitochondrion	36.04	39.52
KXG28799	Sorghum	plastid	41.13	39.34
KXG34536	Sorghum	mitochondrion	30.12	38.29
Os08t0107700-01	Rice	cytosol, mitochondrion	18.43	35.83
Os10t0497432-01	Rice	mitochondrion	12.79	34.96
KRH39054	Soybean	cytosol	22.15	32.39
KRH39057	Soybean	cytosol	22.15	32.39
KRH39004	Soybean	cytosol	22.01	32.19
KRH39074	Soybean	cytosol	22.01	32.19
KRH39072	Soybean	cytosol	21.87	32.06
KRH40513	Soybean	plastid	15.27	31.62
KRH39112	Soybean	cytosol	21.46	31.39
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.18	30.5
Bra026882.1-P	Field mustard	cytosol	22.28	30.34
Bra027636.1-P	Field mustard	cytosol	13.48	30.25
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.67	29.98
Bra036649.1-P	Field mustard	cytosol	15.96	29.67
AT1G63330.2	Thale cress	cytosol	22.56	29.34
KRH08636	Soybean	cytosol	21.05	29.31
Solyc06g007810.1.1	Tomato	cytosol	10.73	29.1
KRH39066	Soybean	cytosol	22.15	29.01
VIT_14s0081g00110.t01	Wine grape	cytosol	19.53	28.92
VIT_14s0081g00120.t01	Wine grape	plastid	22.97	28.64
KRH48615	Soybean	mitochondrion	21.32	28.44
KRH09084	Soybean	plastid	19.81	28.18
Bra027029.1-P	Field mustard	mitochondrion	9.35	27.98
VIT_14s0081g00270.t01	Wine grape	plastid	22.28	27.93
KRH08607	Soybean	cytosol	21.46	27.81
KRH31646	Soybean	cytosol	19.81	27.8
KRH08671	Soybean	cytosol, mitochondrion	21.05	27.67
KRH08277	Soybean	plastid	21.46	27.51
PGSC0003DMT400052977	Potato	cytosol	14.72	27.51
Bra026884.1-P	Field mustard	cytosol	17.33	27.45
KRH41817	Soybean	mitochondrion	20.91	27.39
PGSC0003DMT400008759	Potato	cytosol	11.97	27.27
Bra036651.1-P	Field mustard	mitochondrion	19.95	27.1
KRH08639	Soybean	mitochondrion, plastid	21.05	27.08
KRH08628	Soybean	plastid	20.5	26.99
KRH17148	Soybean	mitochondrion	20.22	26.97
KRH09082	Soybean	cytosol	15.13	26.96
Bra016762.1-P	Field mustard	mitochondrion	22.42	26.85
AT1G62720.1	Thale cress	mitochondrion	17.88	26.8
Bra006187.1-P	Field mustard	plastid	10.73	26.8
KRH40400	Soybean	plastid	21.18	26.69
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.26	26.67
AT5G16640.1	Thale cress	mitochondrion	18.43	26.59
AT1G64580.1	Thale cress	mitochondrion	19.12	26.58
KRH39050	Soybean	mitochondrion	19.39	26.5
KRH25652	Soybean	cytosol, golgi	19.67	26.48
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.56	26.41
KRH09121	Soybean	mitochondrion	19.39	26.4
Bra021192.1-P	Field mustard	plastid	18.29	26.39
PGSC0003DMT400008757	Potato	cytosol	18.02	26.31
Bra026958.1-P	Field mustard	mitochondrion	22.97	26.22
KRH08625	Soybean	plastid	20.77	26.22
AT1G62930.1	Thale cress	plastid	22.56	26.07
AT3G16710.1	Thale cress	mitochondrion	18.16	26.04
Bra027026.1-P	Field mustard	mitochondrion	18.71	26.0
AT1G63080.3	Thale cress	mitochondrion	21.73	25.73
AT1G62680.2	Thale cress	plastid	19.39	25.73
AT1G62670.1	Thale cress	mitochondrion	22.28	25.71
AT1G62590.1	Thale cress	mitochondrion	22.42	25.71
AT1G63150.1	Thale cress	mitochondrion	22.15	25.6
Bra026971.1-P	Field mustard	mitochondrion	22.15	25.6
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.78	25.58
AT1G63130.1	Thale cress	mitochondrion	22.15	25.56
Bra026954.1-P	Field mustard	mitochondrion	22.83	25.54
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.42	25.51
AT1G63400.1	Thale cress	cytosol, plastid	20.22	25.48
AT1G12300.1	Thale cress	mitochondrion	22.28	25.43
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.6	25.36
KRH09154	Soybean	mitochondrion	19.39	25.36
VIT_14s0030g02280.t01	Wine grape	plastid	19.53	25.31
CDX68679	Canola	cytosol	3.99	25.22
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.28	25.16
Solyc06g005220.2.1	Tomato	cytosol	14.03	25.12
PGSC0003DMT400015293	Potato	mitochondrion	21.05	25.08
PGSC0003DMT400015298	Potato	mitochondrion	21.05	25.08
AT1G64583.1	Thale cress	mitochondrion	17.61	25.0
KRH09095	Soybean	plastid	20.08	24.96
KRH09097	Soybean	plastid	19.95	24.87
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.78	24.85
AT1G62914.1	Thale cress	mitochondrion	18.02	24.81
AT1G06580.1	Thale cress	mitochondrion	17.06	24.8
AT1G63070.1	Thale cress	mitochondrion	20.08	24.75
Bra028267.1-P	Field mustard	mitochondrion	21.18	24.6
AT1G62910.1	Thale cress	mitochondrion	21.32	24.53
Solyc04g080120.1.1	Tomato	extracellular	20.5	24.35
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.02	24.13
PGSC0003DMT400025074	Potato	cytosol	18.29	24.09
Solyc06g007300.1.1	Tomato	extracellular	19.26	23.65
Bra031731.1-P	Field mustard	mitochondrion	16.51	23.62
Solyc06g007740.1.1	Tomato	cytosol	19.12	23.56
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.96	23.43
Bra026957.1-P	Field mustard	mitochondrion	19.39	23.38
AT5G41170.1	Thale cress	mitochondrion	16.92	23.34
PGSC0003DMT400056665	Potato	mitochondrion	18.84	23.26
Solyc06g007280.2.1	Tomato	cytosol	8.12	23.14
AT1G12700.2	Thale cress	cytosol	19.39	22.82
PGSC0003DMT400056663	Potato	plastid	18.43	22.79
PGSC0003DMT400052971	Potato	mitochondrion	18.57	22.77
PGSC0003DMT400053185	Potato	mitochondrion	18.43	22.71
PGSC0003DMT400008760	Potato	mitochondrion	18.29	22.7
PGSC0003DMT400025067	Potato	cytosol	14.86	22.69
VIT_14s0030g02260.t01	Wine grape	cytosol	13.76	22.57
KRH08599	Soybean	cytosol, plastid	20.63	22.42
PGSC0003DMT400053182	Potato	cytosol	18.16	22.04
OQU88581	Sorghum	cytosol	32.32	21.62
Bra026401.1-P	Field mustard	plastid	15.82	21.5
Bra027726.1-P	Field mustard	mitochondrion	13.62	21.02
AT4G26800.2	Thale cress	mitochondrion, plastid	14.86	21.01
PGSC0003DMT400053556	Potato	mitochondrion	13.07	20.7
KRH09085	Soybean	mitochondrion	19.26	19.89
AT1G64100.2	Thale cress	cytosol	21.87	19.73
Bra027656.1-P	Field mustard	cytosol	25.31	19.55
KRH39064	Soybean	cytosol	23.25	17.44
KRH12873	Soybean	cytosol	15.82	16.52
Bra016758.1-P	Field mustard	plastid	22.15	13.89

Protein Annotations

EnsemblPlants:OQU80148	EnsemblPlantsGene:SORBI_3007G087900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:OQU80148	ProteinID:OQU80148.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000B8BA8F2	UniProt:A0A1Z5R8T0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr7:-:12037942..12041617

Molecular Weight (calculated)

82307.8 Da

IEP (calculated)

7.868

GRAVY (calculated)

0.018

Length

727 amino acids

Sequence
(BLAST)

001: MLTYARPASV RTFNRLLTVV SRARCSSASE LVVSLFNRMI RECSVKVAPS SCTYTILIGC FCRMGRLKHG FAAFGLILKT GWSLNNTVIF GQLLKGLCDA
101: KRVDEATDIL LRRMPEFGCT LNVISYNILL KGLCNEKRAE EALELMHMMA DDGDGSHTPN VVTYTTVIDG LCKAQMVDRA KGVFQHMIDK GVRPNNHTYT
201: CLIHGYLSTG KWKEVVQMLQ EMSTHGLQPD CVIYAVLLDY LCKNGRCTEA RNIFDSLIRK GIKPHVTIYG ILLHGYATEG ALSEMHSFLD LMVRNGVSPD
301: HHIFNIMFNA YAKKAMIDEA MHIFDKMRQQ WLSPGVVNYG ALIDALCKLG RVDDAVLKFN QMINEGVTPD IFVFSSLVYG LCTVDKWEKA EKLFFEVLDQ
401: GIRLNAAFFN ILMCNLCREG RVMEAQRLID LMLRVDVRPD VISYNTLVDG HCLTGRIDEA AKLLDVMVSI GLKPDEFTYN TLLHGYCKAR RIDDAYSLFR
501: EMLMKGLTPG VVTYNTILHG LFQIGRFCEA KELYLNMINN RRKCDIYTYT IILNGLCRNN FVDEAFKMFQ SLCSKDLQLD IFTINIMIGA LLKGGRKEDA
601: MDLFATISAY GLVPDVETYR LIAENLIKEG SLEELDELFS AMEENGTAPN SRMLNALVRW LLHRGDIGRA GVYLSKLDEK NFSLEASTTS MLISIYSRAE
701: YQQLAKSLPE KYRFPQRSLQ LSVDKKR

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.