CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82827	Sorghum	cytosol	98.87	98.87
OQU82832	Sorghum	cytosol	29.74	82.87
EES07882	Sorghum	cytosol	77.92	79.92
OQU82836	Sorghum	cytosol	60.6	78.92
OQU82831	Sorghum	cytosol	59.6	77.49
KXG19780	Sorghum	cytosol	57.34	77.33
KXG27690	Sorghum	cytosol, plastid	70.89	77.29
OQU80148	Sorghum	mitochondrion	67.88	74.42
OQU82833	Sorghum	cytosol	40.4	71.88
EES09203	Sorghum	cytosol	66.88	66.79
OQU82834	Sorghum	cytosol	73.4	60.75
OQU82856	Sorghum	cytosol	54.96	58.24
Os10t0495200-01	Rice	mitochondrion	52.45	53.45
Os10t0497300-01	Rice	mitochondrion	52.7	52.9
Os08t0248400-01	Rice	mitochondrion	28.61	51.82
Os10t0501700-00	Rice	cytosol	29.49	51.76
Os10t0497366-00	Rice	mitochondrion	25.85	51.37
Os10t0495100-01	Rice	cytosol, mitochondrion	29.49	50.98
Os08t0110200-01	Rice	mitochondrion	48.81	48.75
Os10t0497432-01	Rice	mitochondrion	16.19	48.5
OQU88594	Sorghum	cytosol	31.62	48.28
Os08t0107800-01	Rice	mitochondrion	37.26	47.6
Os10t0499500-01	Rice	mitochondrion	29.74	46.84
EER95949	Sorghum	mitochondrion	37.64	45.25
KXG28799	Sorghum	plastid	43.04	45.13
KXG35774	Sorghum	cytosol, mitochondrion	25.97	43.76
Os08t0107700-01	Rice	cytosol, mitochondrion	20.2	43.05
KXG34536	Sorghum	mitochondrion	30.36	42.31
KRH39074	Soybean	cytosol	21.46	34.41
KRH39054	Soybean	cytosol	21.33	34.21
KRH39072	Soybean	cytosol	21.08	33.87
KRH39004	Soybean	cytosol	21.08	33.8
KRH39057	Soybean	cytosol	20.83	33.4
KRH40513	Soybean	plastid	14.55	33.05
KRH39112	Soybean	cytosol	20.58	33.0
Solyc06g007280.2.1	Tomato	cytosol	10.29	32.16
KRH09084	Soybean	plastid	20.33	31.7
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.08	31.68
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.95	31.66
KRH08636	Soybean	cytosol	20.7	31.61
KRH39066	Soybean	cytosol	21.96	31.53
VIT_14s0081g00110.t01	Wine grape	cytosol	19.32	31.36
AT1G63330.2	Thale cress	cytosol	21.96	31.31
KRH08607	Soybean	cytosol	21.96	31.19
KRH39050	Soybean	mitochondrion	20.7	31.02
KRH48615	Soybean	mitochondrion	21.2	31.01
KRH41817	Soybean	mitochondrion	21.46	30.81
KRH31646	Soybean	cytosol	19.95	30.7
Bra027636.1-P	Field mustard	cytosol	12.42	30.56
VIT_14s0081g00120.t01	Wine grape	plastid	22.33	30.53
Bra036649.1-P	Field mustard	cytosol	14.93	30.43
KRH08277	Soybean	plastid	21.58	30.34
AT1G63400.1	Thale cress	cytosol, plastid	21.83	30.16
Bra026882.1-P	Field mustard	cytosol	20.2	30.15
KRH17148	Soybean	mitochondrion	20.58	30.09
VIT_14s0081g00270.t01	Wine grape	plastid	21.83	30.0
KRH08628	Soybean	plastid	20.7	29.89
AT1G63070.1	Thale cress	mitochondrion	22.08	29.83
KRH08639	Soybean	mitochondrion, plastid	21.08	29.73
KRH08671	Soybean	cytosol, mitochondrion	20.58	29.66
AT1G63080.3	Thale cress	mitochondrion	22.84	29.64
AT5G16640.1	Thale cress	mitochondrion	18.7	29.56
AT1G62914.1	Thale cress	mitochondrion	19.57	29.55
AT1G62670.1	Thale cress	mitochondrion	23.34	29.52
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.45	29.52
Bra026884.1-P	Field mustard	cytosol	16.94	29.41
KRH08625	Soybean	plastid	21.2	29.34
KRH40400	Soybean	plastid	21.2	29.29
KRH25652	Soybean	cytosol, golgi	19.82	29.26
AT1G62930.1	Thale cress	plastid	23.09	29.25
Bra006187.1-P	Field mustard	plastid	10.66	29.21
AT1G63130.1	Thale cress	mitochondrion	23.09	29.21
Bra021192.1-P	Field mustard	plastid	18.44	29.17
PGSC0003DMT400008757	Potato	cytosol	18.19	29.12
KRH09121	Soybean	mitochondrion	19.45	29.03
AT1G62590.1	Thale cress	mitochondrion	22.96	28.86
Solyc06g005220.2.1	Tomato	cytosol	14.68	28.82
Bra028267.1-P	Field mustard	mitochondrion	22.46	28.59
Bra026958.1-P	Field mustard	mitochondrion	22.84	28.57
AT1G12300.1	Thale cress	mitochondrion	22.71	28.41
Bra027029.1-P	Field mustard	mitochondrion	8.66	28.4
Bra016762.1-P	Field mustard	mitochondrion	21.58	28.34
AT1G62910.1	Thale cress	mitochondrion	22.46	28.32
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.96	28.27
KRH09154	Soybean	mitochondrion	19.7	28.24
Bra036651.1-P	Field mustard	mitochondrion	18.95	28.22
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.96	28.18
Bra026971.1-P	Field mustard	mitochondrion	22.21	28.14
AT1G64580.1	Thale cress	mitochondrion	18.44	28.11
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.71	28.11
PGSC0003DMT400052977	Potato	cytosol	13.68	28.02
Bra026954.1-P	Field mustard	mitochondrion	22.84	28.0
Solyc06g007740.1.1	Tomato	cytosol	20.7	27.97
AT1G63150.1	Thale cress	mitochondrion	21.96	27.82
KRH09082	Soybean	cytosol	14.18	27.7
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.56	27.67
AT3G16710.1	Thale cress	mitochondrion	17.57	27.61
KRH09095	Soybean	plastid	20.2	27.52
KRH09097	Soybean	plastid	20.08	27.44
PGSC0003DMT400008759	Potato	cytosol	10.92	27.27
Solyc06g007810.1.1	Tomato	cytosol	9.16	27.24
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.83	27.23
AT1G62720.1	Thale cress	mitochondrion	16.56	27.22
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.44	27.07
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.56	26.88
PGSC0003DMT400056665	Potato	mitochondrion	19.82	26.83
PGSC0003DMT400025074	Potato	cytosol	18.57	26.81
Solyc06g007300.1.1	Tomato	extracellular	19.82	26.69
VIT_14s0030g02280.t01	Wine grape	plastid	18.7	26.56
AT1G62680.2	Thale cress	plastid	18.19	26.46
AT1G06580.1	Thale cress	mitochondrion	16.56	26.4
PGSC0003DMT400015293	Potato	mitochondrion	20.2	26.39
PGSC0003DMT400015298	Potato	mitochondrion	20.2	26.39
Bra027026.1-P	Field mustard	mitochondrion	17.31	26.39
Bra031731.1-P	Field mustard	mitochondrion	16.81	26.38
AT1G64583.1	Thale cress	mitochondrion	16.94	26.37
PGSC0003DMT400056663	Potato	plastid	19.45	26.36
PGSC0003DMT400053185	Potato	mitochondrion	19.45	26.27
AT5G41170.1	Thale cress	mitochondrion	17.19	26.0
Solyc04g080120.1.1	Tomato	extracellular	19.82	25.82
PGSC0003DMT400008760	Potato	mitochondrion	18.95	25.77
AT1G12700.2	Thale cress	cytosol	19.95	25.73
PGSC0003DMT400025067	Potato	cytosol	15.31	25.63
Bra026957.1-P	Field mustard	mitochondrion	19.32	25.54
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.56	25.05
PGSC0003DMT400052971	Potato	mitochondrion	18.57	24.96
KRH08599	Soybean	cytosol, plastid	20.7	24.66
Bra027726.1-P	Field mustard	mitochondrion	14.55	24.63
PGSC0003DMT400053182	Potato	cytosol	18.07	24.04
AT4G26800.2	Thale cress	mitochondrion, plastid	15.43	23.93
Bra026401.1-P	Field mustard	plastid	16.06	23.93
CDX68679	Canola	cytosol	3.39	23.48
OQU88581	Sorghum	cytosol	32.0	23.46
KRH09085	Soybean	mitochondrion	19.95	22.59
AT1G64100.2	Thale cress	cytosol	22.71	22.46
PGSC0003DMT400053556	Potato	mitochondrion	12.92	22.44
Bra027656.1-P	Field mustard	cytosol	26.1	22.1
VIT_14s0030g02260.t01	Wine grape	cytosol	11.67	20.99
KRH12873	Soybean	cytosol	17.31	19.83
KRH39064	Soybean	cytosol	23.09	18.99
Bra016758.1-P	Field mustard	plastid	21.46	14.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8085616	UniProt:A0A1Z5RGC4	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU82823	ProteinID:OQU82823	ProteinID:OQU82823.1
ProteinID:OQU82824.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3005G026500	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001A86784	RefSeq:XP_002450229.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2377980..2382904

Molecular Weight (calculated)

89539.1 Da

IEP (calculated)

7.536

GRAVY (calculated)

-0.003

Length

797 amino acids

Sequence
(BLAST)

001: MSGRVSAVSN RCLELERVIG SRARSGSLGL DDALKLFDGL LTHARPASVI AFNHLLTAVS RVSGRRSSTT ESELVVSLFN RMIRECTIKV TPDPCTYSIL
101: IGCFCRMGRL EHGFATFGLI LKSGWRVNNI VINQLLKGLC DAKRLCEAMD ILVKRMPELG CTPDVVSYNT LLKGFCNEKR AEEALELLHM MADSQGRSCP
201: PNVVSYAIVI NGFFTEGQVD KAYNLFLEMM DRGIQPNVVT YTTVIDGLCK AQVVDRAEGV FQQMIDKGVK PDNDTYNCLI HGYLSIGKWK EVVRMLEEMS
301: AHGLKPDCYT YGSLLNYLCN NGRCREARFL FDSMIRKGIK PNVAIYGILI HGYATKGALS EMHDLLNLMV ENGLSPDHHI FNIIFTAYAK KAMIDEAMHI
401: FNKMKQQGLS PDVVNYGALI DALCKLGRVD DAVLKFNQMM NEGVAPNIFV FNSLVYGLCT VDKWEKAKEF YFEMLNQGIR PDVVFFNTIL CNLCTKGQVM
501: KAQRLIDLME RVGTRPGVIS YTTLIGGHCL VGRIDEAAKS LDVMLSVGLK PDEWTYNTLL HGYCRAGRID DAYGVFREML RNGITPGVVT YSTILHGLFT
601: TRRFSEAKEL YLNMITSGKQ WNIWIYNIIL NGLSKNNCVD EAFKLFQSLC SKDFQLEITT FNIMIGALFK SGRNEDAMHL FATISSYGLV PDVFTYCLIA
701: ENLIEEGYLE EFDDLFSAME KSGTTPNSRM LNALVRRLLH RGDITRAGAY LCKLDEKNFS LEASTTAMLI SLLSRDEYHH HATSLPEKYR VLNEAKK

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.