Factsheet for Os08t0248400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0497432-01	Rice	mitochondrion	43.86	72.56
Os10t0495100-01	Rice	cytosol, mitochondrion	70.91	67.68
Os10t0497366-00	Rice	mitochondrion	53.18	58.35
Os10t0499500-01	Rice	mitochondrion	67.05	58.3
Os08t0107700-01	Rice	cytosol, mitochondrion	48.64	57.22
HORVU1Hr1G018190.2	Barley	cytosol	36.36	56.14
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	31.59	54.94
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	39.55	53.54
Zm00001d018982_P001	Maize	mitochondrion	42.5	53.43
TraesCSU01G089800.1	Wheat	mitochondrion	42.05	52.71
TraesCS6A01G015000.1	Wheat	mitochondrion	48.64	51.57
OQU82832	Sorghum	cytosol	32.5	50.0
TraesCSU01G090200.1	Wheat	cytosol	50.23	50.0
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	42.27	49.08
TraesCS6D01G076500.1	Wheat	plastid	50.23	48.79
TraesCSU01G089700.1	Wheat	mitochondrion	51.14	46.68
Os10t0495200-01	Rice	mitochondrion	76.36	42.97
Os10t0497300-01	Rice	mitochondrion	74.09	41.06
Os08t0107800-01	Rice	mitochondrion	58.18	41.03
Os10t0501700-00	Rice	cytosol	41.36	40.09
Solyc06g007280.2.1	Tomato	cytosol	20.0	34.51
HORVU6Hr1G014310.1	Barley	mitochondrion	52.73	33.77
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	53.41	32.87
TraesCS6D01G047700.1	Wheat	mitochondrion	51.36	32.71
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	52.5	32.31
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	51.82	31.93
TraesCS6B01G021600.1	Wheat	mitochondrion	51.14	31.42
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	50.91	31.33
Os04t0349600-01	Rice	plastid	27.27	31.01
Os08t0110200-01	Rice	mitochondrion	53.41	29.45
OQU82827	Sorghum	cytosol	52.27	28.86
Zm00001d009733_P001	Maize	cytosol	52.05	28.8
KRH40513	Soybean	plastid	22.95	28.77
OQU82856	Sorghum	cytosol	49.09	28.72
HORVU6Hr1G002890.6	Barley	cytosol, plastid	51.82	28.68
OQU82823	Sorghum	cytosol	51.82	28.61
KXG27690	Sorghum	cytosol, plastid	45.23	27.22
EES07882	Sorghum	cytosol	47.73	27.03
EES09203	Sorghum	cytosol	47.95	26.44
OQU80148	Sorghum	mitochondrion	42.95	26.0
VIT_12s0028g02320.t01	Wine grape	mitochondrion	27.95	25.79
KRH39004	Soybean	cytosol	28.41	25.15
KRH39072	Soybean	cytosol	27.95	24.8
KRH39054	Soybean	cytosol	27.95	24.75
KRH39112	Soybean	cytosol	27.95	24.75
KRH39057	Soybean	cytosol	27.73	24.55
AT1G62914.1	Thale cress	mitochondrion	29.32	24.43
KRH39074	Soybean	cytosol	27.5	24.35
TraesCS6D01G017800.1	Wheat	cytosol	29.55	24.21
Bra036649.1-P	Field mustard	cytosol	21.36	24.04
KRH39050	Soybean	mitochondrion	28.86	23.87
Zm00001d009735_P001	Maize	cytosol	52.05	23.54
OQU82836	Sorghum	cytosol	32.73	23.53
Bra027029.1-P	Field mustard	mitochondrion	12.95	23.46
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	27.95	23.43
KRH39066	Soybean	cytosol	29.55	23.42
OQU82831	Sorghum	cytosol	31.36	22.51
KRH08636	Soybean	cytosol	26.59	22.41
KRH08277	Soybean	plastid	28.64	22.22
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	25.45	22.18
KRH09084	Soybean	plastid	25.68	22.11
KRH48615	Soybean	mitochondrion	27.27	22.02
KRH31646	Soybean	cytosol	25.91	22.01
AT1G63330.2	Thale cress	cytosol	27.95	22.0
KRH41817	Soybean	mitochondrion	27.73	21.98
KRH17148	Soybean	mitochondrion	27.05	21.83
VIT_14s0030g02280.t01	Wine grape	plastid	27.73	21.75
TraesCS6D01G017700.1	Wheat	plastid	26.36	21.72
AT5G16640.1	Thale cress	mitochondrion	24.77	21.63
Bra027636.1-P	Field mustard	cytosol	15.91	21.6
AT1G63400.1	Thale cress	cytosol, plastid	28.18	21.49
KRH40400	Soybean	plastid	28.18	21.49
KRH08639	Soybean	mitochondrion, plastid	27.5	21.42
KRH08671	Soybean	cytosol, mitochondrion	26.82	21.34
KRH08607	Soybean	cytosol	27.05	21.21
AT1G06580.1	Thale cress	mitochondrion	24.09	21.2
AT1G62910.1	Thale cress	mitochondrion	30.23	21.04
AT1G62930.1	Thale cress	plastid	30.0	20.99
KXG19780	Sorghum	cytosol	28.18	20.98
Bra036651.1-P	Field mustard	mitochondrion	25.45	20.93
KRH25652	Soybean	cytosol, golgi	25.68	20.93
KRH08625	Soybean	plastid	27.27	20.83
KRH08628	Soybean	plastid	26.14	20.83
TraesCS6A01G083000.1	Wheat	cytosol	21.59	20.83
Bra026882.1-P	Field mustard	cytosol	25.23	20.79
VIT_14s0081g00110.t01	Wine grape	cytosol	23.18	20.77
AT3G22470.1	Thale cress	cytosol, mitochondrion	29.09	20.68
AT1G62670.1	Thale cress	mitochondrion	29.55	20.63
AT1G63130.1	Thale cress	mitochondrion	29.55	20.63
AT1G62720.1	Thale cress	mitochondrion	22.73	20.62
OQU82834	Sorghum	cytosol	45.0	20.56
AT1G63080.3	Thale cress	mitochondrion	28.64	20.52
Solyc06g005220.2.1	Tomato	cytosol	18.86	20.44
AT1G63070.1	Thale cress	mitochondrion	27.27	20.34
AT1G64583.1	Thale cress	mitochondrion	23.64	20.31
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	35.23	20.23
KRH09121	Soybean	mitochondrion	24.55	20.22
KRH09154	Soybean	mitochondrion	25.45	20.14
AT1G12620.1	Thale cress	cytosol, mitochondrion	28.41	20.13
Bra028267.1-P	Field mustard	mitochondrion	28.64	20.13
Bra026958.1-P	Field mustard	mitochondrion	29.09	20.09
AT1G64580.1	Thale cress	mitochondrion	23.86	20.08
Bra026954.1-P	Field mustard	mitochondrion	29.55	20.0
AT1G62590.1	Thale cress	mitochondrion	28.64	19.87
AT1G63150.1	Thale cress	mitochondrion	28.41	19.87
VIT_14s0081g00270.t01	Wine grape	plastid	26.14	19.83
PGSC0003DMT400025087	Potato	endoplasmic reticulum	22.27	19.8
AT1G12300.1	Thale cress	mitochondrion	28.64	19.78
AT3G16710.1	Thale cress	mitochondrion	22.73	19.72
Bra026971.1-P	Field mustard	mitochondrion	28.18	19.71
Solyc06g007740.1.1	Tomato	cytosol	26.36	19.66
Bra021192.1-P	Field mustard	plastid	22.5	19.64
VIT_14s0081g00120.t01	Wine grape	plastid	25.91	19.55
Bra027026.1-P	Field mustard	mitochondrion	23.18	19.5
Bra026884.1-P	Field mustard	cytosol	20.23	19.39
PGSC0003DMT400053556	Potato	mitochondrion	20.23	19.39
PGSC0003DMT400056663	Potato	plastid	25.91	19.39
AT1G12700.2	Thale cress	cytosol	27.05	19.26
AT1G12775.1	Thale cress	cytosol, mitochondrion	28.18	19.25
KRH09095	Soybean	plastid	25.45	19.15
Bra016762.1-P	Field mustard	mitochondrion	26.36	19.11
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.68	19.08
KRH09097	Soybean	plastid	25.23	19.04
PGSC0003DMT400008757	Potato	cytosol	21.36	18.88
PGSC0003DMT400056665	Potato	mitochondrion	25.0	18.68
PGSC0003DMT400025067	Potato	cytosol	20.0	18.49
PGSC0003DMT400025074	Potato	cytosol	23.18	18.48
Bra026957.1-P	Field mustard	mitochondrion	25.23	18.41
PGSC0003DMT400053185	Potato	mitochondrion	24.55	18.31
Solyc06g007300.1.1	Tomato	extracellular	24.55	18.24
VIT_14s0081g00280.t01	Wine grape	mitochondrion	26.36	18.15
AT5G41170.1	Thale cress	mitochondrion	21.59	18.03
PGSC0003DMT400008760	Potato	mitochondrion	23.86	17.92
AT4G26800.2	Thale cress	mitochondrion, plastid	20.91	17.9
AT1G62680.2	Thale cress	plastid	22.27	17.88
PGSC0003DMT400015293	Potato	mitochondrion	24.77	17.87
PGSC0003DMT400015298	Potato	mitochondrion	24.77	17.87
PGSC0003DMT400052977	Potato	cytosol	15.68	17.74
Solyc04g080120.1.1	Tomato	extracellular	24.55	17.65
KRH09082	Soybean	cytosol	16.14	17.4
KRH08599	Soybean	cytosol, plastid	26.36	17.34
Bra006187.1-P	Field mustard	plastid	11.36	17.18
Bra026836.1-P	Field mustard	cytosol, mitochondrion	19.09	17.11
PGSC0003DMT400052971	Potato	mitochondrion	22.95	17.03
PGSC0003DMT400053182	Potato	cytosol	23.18	17.03
Bra031731.1-P	Field mustard	mitochondrion	19.55	16.93
Bra027658.1-P	Field mustard	cytosol, mitochondrion	20.68	16.76
TraesCS6B01G114300.1	Wheat	cytosol	14.77	16.71
Os04t0351333-00	Rice	cytosol	32.73	16.38
Bra027726.1-P	Field mustard	mitochondrion	17.27	16.14
KRH09085	Soybean	mitochondrion	25.45	15.91
Bra026401.1-P	Field mustard	plastid	18.64	15.33
KRH12873	Soybean	cytosol	23.18	14.66
PGSC0003DMT400008759	Potato	cytosol	10.45	14.42
AT1G64100.2	Thale cress	cytosol	26.36	14.39
Bra027656.1-P	Field mustard	cytosol	28.64	13.39
KRH39064	Soybean	cytosol	28.86	13.11
TraesCS6A01G014600.1	Wheat	cytosol	11.59	12.91
VIT_14s0030g02260.t01	Wine grape	cytosol	12.5	12.42
Solyc06g007810.1.1	Tomato	cytosol	6.59	10.82
Bra016758.1-P	Field mustard	plastid	28.18	10.7
OQU82833	Sorghum	cytosol	8.41	8.26
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:BAF23278.1	ProteinID:BAT04544.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os08g0248400	EnsemblPlants:Os08t0248400-01	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat	UniProt:Q0J6Y7	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DD9466	SEG:seg	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os08t0248400-01)

Coordinates

chr8:+:9050060..9051612

Molecular Weight (calculated)

47438.8 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.038

Length

440 amino acids

Sequence
(BLAST)

001: MARRVPARAR SVGGGPRSEG ARPGPKTGAA GASGGGAEDA LHVFDELLRQ GRGGGGGASI IRSLNRALAA VARDSPAAAV SGFNRMARSS DGAVTPTLHT
101: YGILIGCCCR AGRLDLGFAG LGNVIKKGYR VEPIIFTPLL KSLCAEKRTS NAMNIVLRRM TELGCAPHVF SYNILLKGLC HESRSQEALE LLHMMADDGG
201: DCPPDVVSYS TIIDGLFKEG DSDKAYSTYH EMLERGILPD VVTYNTIVAA LCKAQAMDKA MDVLNRMVKN GVMPDCITYN SIVHGYCSSG QSKEAIGILE
301: KMCSDGVEPD AVTYTSLMDY LCKNGRCIEA RKILDSMIKR GLKPNVITYS TLLHGYATKG ALVEMRDLLD LMVRNGIQPD RHVFSILICA CTKHQNVDVA
401: MFVFSKMRQQ RLTPDVVTYG TLIDGLCKSG RVDDAMLNLE

Best Arabidopsis Sequence Match ( AT1G12775.1 )
(BLAST)

001: MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK
101: TKQYELVLAL CKQMESKGIA HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL VDRMVEMGHK PTLITLNTLV
201: NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
301: YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD
401: PDIMTFNILI NGYCKANRID DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL DGLCDNGELE KALEIFGKIE
501: KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
601: IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12775, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.