Factsheet for Zm00001d018982_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G62670.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G018190.2	Barley	cytosol	41.14	50.53
TraesCSU01G089800.1	Wheat	mitochondrion	43.14	43.02
Os08t0248400-01	Rice	mitochondrion	53.43	42.5
Os10t0495100-01	Rice	cytosol, mitochondrion	55.71	42.3
Os08t0107700-01	Rice	cytosol, mitochondrion	44.29	41.44
TraesCS6A01G015000.1	Wheat	mitochondrion	48.0	40.48
TraesCSU01G090200.1	Wheat	cytosol	50.57	40.05
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	37.14	40.0
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	42.0	38.79
Os10t0497432-01	Rice	mitochondrion	28.86	37.97
TraesCS6D01G076500.1	Wheat	plastid	49.14	37.97
Os10t0497366-00	Rice	mitochondrion	42.57	37.16
Os10t0499500-01	Rice	mitochondrion	52.57	36.36
TraesCSU01G089700.1	Wheat	mitochondrion	48.86	35.48
Zm00001d009733_P001	Maize	cytosol	77.71	34.21
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	24.57	33.99
Solyc06g007280.2.1	Tomato	cytosol	22.0	30.2
Os08t0107800-01	Rice	mitochondrion	51.14	28.69
Os10t0501700-00	Rice	cytosol	37.14	28.63
Zm00001d009735_P001	Maize	cytosol	78.57	28.26
HORVU6Hr1G014310.1	Barley	mitochondrion	50.86	25.91
Os10t0495200-01	Rice	mitochondrion	56.29	25.19
TraesCS6D01G047700.1	Wheat	mitochondrion	49.43	25.04
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	51.14	25.04
Os10t0497300-01	Rice	mitochondrion	56.0	24.69
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	50.29	24.65
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	50.0	24.48
TraesCS6B01G021600.1	Wheat	mitochondrion	49.43	24.16
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	47.14	23.08
AT1G62914.1	Thale cress	mitochondrion	34.57	22.92
KRH40513	Soybean	plastid	22.86	22.79
TraesCS6D01G017800.1	Wheat	cytosol	34.29	22.35
HORVU6Hr1G002890.6	Barley	cytosol, plastid	48.86	21.51
VIT_12s0028g02320.t01	Wine grape	mitochondrion	28.86	21.17
Zm00001d007555_P001	Maize	plastid	48.86	21.01
Zm00001d007531_P001	Maize	plastid	48.57	20.88
Zm00001d007548_P001	Maize	plastid	47.71	20.52
Bra036649.1-P	Field mustard	cytosol	22.86	20.46
Zm00001d007559_P001	Maize	plastid	47.71	20.44
Os08t0110200-01	Rice	mitochondrion	46.57	20.43
AT1G63400.1	Thale cress	cytosol, plastid	32.86	19.93
Zm00001d007534_P001	Maize	plastid	43.71	19.69
AT1G63330.2	Thale cress	cytosol	30.86	19.32
TraesCS6D01G017700.1	Wheat	plastid	29.43	19.29
KRH39057	Soybean	cytosol	27.14	19.11
TraesCS6A01G083000.1	Wheat	cytosol	24.86	19.08
Solyc06g005220.2.1	Tomato	cytosol	21.71	18.72
KRH39054	Soybean	cytosol	26.57	18.71
AT1G63080.3	Thale cress	mitochondrion	32.57	18.57
KRH41817	Soybean	mitochondrion	29.43	18.56
KRH39072	Soybean	cytosol	26.29	18.55
Bra027029.1-P	Field mustard	mitochondrion	12.86	18.52
KRH39004	Soybean	cytosol	26.29	18.51
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	26.57	18.42
AT1G63130.1	Thale cress	mitochondrion	33.14	18.41
KRH09084	Soybean	plastid	26.86	18.4
KRH39050	Soybean	mitochondrion	27.71	18.23
KRH31646	Soybean	cytosol	26.86	18.15
AT1G62670.1	Thale cress	mitochondrion	32.57	18.1
PGSC0003DMT400025087	Potato	endoplasmic reticulum	25.43	17.98
KRH39074	Soybean	cytosol	25.43	17.91
KRH39112	Soybean	cytosol	25.43	17.91
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	26.86	17.9
Bra027636.1-P	Field mustard	cytosol	16.57	17.9
AT1G62930.1	Thale cress	plastid	32.0	17.81
AT1G62910.1	Thale cress	mitochondrion	32.0	17.72
AT1G63070.1	Thale cress	mitochondrion	29.71	17.63
KRH09121	Soybean	mitochondrion	26.86	17.6
PGSC0003DMT400025067	Potato	cytosol	23.71	17.44
KRH08636	Soybean	cytosol	26.0	17.43
PGSC0003DMT400053556	Potato	mitochondrion	22.86	17.43
AT1G12300.1	Thale cress	mitochondrion	31.71	17.43
Bra026882.1-P	Field mustard	cytosol	26.57	17.42
VIT_14s0081g00110.t01	Wine grape	cytosol	24.29	17.31
AT1G12620.1	Thale cress	cytosol, mitochondrion	30.57	17.23
AT5G16640.1	Thale cress	mitochondrion	24.57	17.06
Bra026958.1-P	Field mustard	mitochondrion	30.86	16.95
AT1G12775.1	Thale cress	cytosol, mitochondrion	31.14	16.93
AT1G62590.1	Thale cress	mitochondrion	30.57	16.88
AT1G63150.1	Thale cress	mitochondrion	30.29	16.85
Bra026971.1-P	Field mustard	mitochondrion	30.29	16.85
Bra016762.1-P	Field mustard	mitochondrion	29.14	16.8
Solyc06g007740.1.1	Tomato	cytosol	28.29	16.78
Bra028267.1-P	Field mustard	mitochondrion	30.0	16.77
Bra027658.1-P	Field mustard	cytosol, mitochondrion	26.0	16.76
KRH08607	Soybean	cytosol	26.86	16.76
PGSC0003DMT400052977	Potato	cytosol	18.57	16.71
KRH08628	Soybean	plastid	26.29	16.67
AT1G64580.1	Thale cress	mitochondrion	24.86	16.63
KRH09095	Soybean	plastid	27.71	16.58
AT1G62720.1	Thale cress	mitochondrion	22.86	16.49
PGSC0003DMT400025074	Potato	cytosol	26.0	16.49
AT3G22470.1	Thale cress	cytosol, mitochondrion	29.14	16.48
KRH09097	Soybean	plastid	27.43	16.47
KRH08277	Soybean	plastid	26.57	16.4
Solyc06g007300.1.1	Tomato	extracellular	27.71	16.39
KRH48615	Soybean	mitochondrion	25.43	16.33
KRH25652	Soybean	cytosol, golgi	25.14	16.3
KRH08639	Soybean	mitochondrion, plastid	26.29	16.28
PGSC0003DMT400008757	Potato	cytosol	23.14	16.27
Bra036651.1-P	Field mustard	mitochondrion	24.86	16.26
Bra026957.1-P	Field mustard	mitochondrion	28.0	16.25
VIT_14s0030g02280.t01	Wine grape	plastid	26.0	16.22
PGSC0003DMT400056665	Potato	mitochondrion	27.14	16.13
Bra026884.1-P	Field mustard	cytosol	21.14	16.12
PGSC0003DMT400053185	Potato	mitochondrion	27.14	16.1
KRH08671	Soybean	cytosol, mitochondrion	25.14	15.91
Bra027026.1-P	Field mustard	mitochondrion	23.71	15.87
VIT_14s0081g00270.t01	Wine grape	plastid	26.29	15.86
KRH39066	Soybean	cytosol	25.14	15.86
KRH09154	Soybean	mitochondrion	25.14	15.83
AT1G64583.1	Thale cress	mitochondrion	23.14	15.82
PGSC0003DMT400052971	Potato	mitochondrion	26.57	15.68
Bra021192.1-P	Field mustard	plastid	22.57	15.67
VIT_14s0081g00120.t01	Wine grape	plastid	26.0	15.61
KRH40400	Soybean	plastid	25.71	15.6
KRH17148	Soybean	mitochondrion	24.29	15.6
Bra026954.1-P	Field mustard	mitochondrion	28.86	15.54
PGSC0003DMT400008760	Potato	mitochondrion	26.0	15.53
KRH08625	Soybean	plastid	25.43	15.45
AT1G12700.2	Thale cress	cytosol	27.14	15.37
PGSC0003DMT400056663	Potato	plastid	25.71	15.31
AT1G06580.1	Thale cress	mitochondrion	21.71	15.2
KRH09082	Soybean	cytosol	17.71	15.2
AT1G62680.2	Thale cress	plastid	23.71	15.15
PGSC0003DMT400015293	Potato	mitochondrion	26.29	15.08
PGSC0003DMT400015298	Potato	mitochondrion	26.29	15.08
VIT_14s0081g00280.t01	Wine grape	mitochondrion	27.43	15.02
AT5G41170.1	Thale cress	mitochondrion	22.57	14.99
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.29	14.88
Solyc04g080120.1.1	Tomato	extracellular	25.71	14.71
PGSC0003DMT400053182	Potato	cytosol	25.14	14.69
AT4G26800.2	Thale cress	mitochondrion, plastid	21.43	14.59
AT3G16710.1	Thale cress	mitochondrion	20.57	14.2
Bra031731.1-P	Field mustard	mitochondrion	20.57	14.17
TraesCS6B01G114300.1	Wheat	cytosol	15.71	14.14
Bra026836.1-P	Field mustard	cytosol, mitochondrion	19.14	13.65
KRH08599	Soybean	cytosol, plastid	26.0	13.6
Bra006187.1-P	Field mustard	plastid	11.14	13.4
AT1G64100.2	Thale cress	cytosol	30.29	13.15
KRH12873	Soybean	cytosol	25.71	12.93
KRH09085	Soybean	mitochondrion	25.71	12.78
Bra026401.1-P	Field mustard	plastid	18.86	12.34
PGSC0003DMT400008759	Potato	cytosol	10.86	11.91
Bra027656.1-P	Field mustard	cytosol	30.0	11.16
Bra027726.1-P	Field mustard	mitochondrion	14.86	11.04
TraesCS6A01G014600.1	Wheat	cytosol	12.29	10.89
KRH39064	Soybean	cytosol	26.29	9.49
VIT_14s0030g02260.t01	Wine grape	cytosol	11.71	9.26
Bra016758.1-P	Field mustard	plastid	29.71	8.97
Solyc06g007810.1.1	Tomato	cytosol	6.29	8.21
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d018982_P001	EnsemblPlants:Zm00001d018982_T001	EnsemblPlantsGene:Zm00001d018982	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF302	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:ONM51880.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0002212BB7	UniProt:A0A1D6HUA1	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr7:+:11815778..11816830

Molecular Weight (calculated)

39149.1 Da

IEP (calculated)

8.234

GRAVY (calculated)

0.057

Length

350 amino acids

Sequence
(BLAST)

001: MARSRVNMMA TNACAFDIRI RCFCNVGRLD LADILIRCFC NVGRLDLAFA AFGLFLRTGW RVQNVVLNQL IKGLCDGKRT GDAMDMVFRR MPELGYTPDV
101: FSYNALIKGL CAEKKSQEAL ELLLHMTANG GYNCSPDVVS YNIVIDGLFK EGEVDKAYFL FHEMPGQGFP PDLVTYSSVI DGLCKAQAMD KAEASLQQML
201: YKGVMPNTRP YNSLIHGYCS LGQLVEAVRL LKKMSGGGLQ LNVVTYNMLI DYYCKIGRCA EARSIFDSMV RRGQKPNATT YCSLLHGYAT KGALVDMHDL
301: LDLMIRDGIP IEHRVFNILI YAYAKHETVD KAMAVFAEMR QNGLRPNLVS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.