Factsheet for Zm00001d009735_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G62670.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009733_P001	Maize	cytosol	78.93	96.6
Zm00001d018982_P001	Maize	mitochondrion	28.26	78.57
TraesCS6A01G014600.1	Wheat	cytosol	23.12	56.96
TraesCS6D01G017800.1	Wheat	cytosol	31.14	56.42
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	40.9	55.74
Os10t0497300-01	Rice	mitochondrion	45.22	55.42
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	40.29	54.83
TraesCS6B01G021600.1	Wheat	mitochondrion	40.19	54.61
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	40.08	54.55
Os10t0495200-01	Rice	mitochondrion	43.37	53.96
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	39.36	53.57
Os10t0501700-00	Rice	cytosol	24.97	53.52
Os10t0497366-00	Rice	mitochondrion	21.99	53.37
Os10t0495100-01	Rice	cytosol, mitochondrion	25.28	53.36
TraesCS6D01G017700.1	Wheat	plastid	29.09	53.0
Os08t0248400-01	Rice	mitochondrion	23.54	52.05
HORVU1Hr1G018190.2	Barley	cytosol	15.21	51.93
HORVU6Hr1G014310.1	Barley	mitochondrion	36.18	51.24
Os10t0497432-01	Rice	mitochondrion	13.98	51.13
TraesCSU01G090200.1	Wheat	cytosol	23.12	50.91
Os08t0107800-01	Rice	mitochondrion	32.37	50.48
TraesCSU01G089800.1	Wheat	mitochondrion	18.19	50.43
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	13.05	50.2
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	16.65	49.85
Os10t0499500-01	Rice	mitochondrion	25.8	49.6
Os08t0110200-01	Rice	mitochondrion	40.6	49.5
TraesCS6A01G015000.1	Wheat	mitochondrion	20.97	49.16
TraesCS6D01G076500.1	Wheat	plastid	22.82	49.01
TraesCSU01G089700.1	Wheat	mitochondrion	24.05	48.55
TraesCS6A01G083000.1	Wheat	cytosol	22.61	48.25
TraesCS6B01G114300.1	Wheat	cytosol	19.22	48.07
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	18.6	47.76
HORVU6Hr1G002890.6	Barley	cytosol, plastid	38.64	47.3
TraesCS6D01G047700.1	Wheat	mitochondrion	32.68	46.02
Os08t0107700-01	Rice	cytosol, mitochondrion	17.47	45.45
Zm00001d007531_P001	Maize	plastid	37.62	44.96
Zm00001d007555_P001	Maize	plastid	37.31	44.59
Zm00001d007534_P001	Maize	plastid	35.56	44.53
Zm00001d007548_P001	Maize	plastid	37.0	44.23
Zm00001d007559_P001	Maize	plastid	37.1	44.19
Solyc06g007280.2.1	Tomato	cytosol	9.46	36.08
KRH39057	Soybean	cytosol	16.75	32.8
KRH39054	Soybean	cytosol	16.44	32.19
KRH39074	Soybean	cytosol	16.44	32.19
KRH39072	Soybean	cytosol	16.24	31.85
KRH39004	Soybean	cytosol	16.24	31.79
KRH39112	Soybean	cytosol	16.24	31.79
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.34	31.49
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.42	31.45
KRH40513	Soybean	plastid	11.31	31.34
KRH08636	Soybean	cytosol	16.44	30.65
KRH48615	Soybean	mitochondrion	16.96	30.28
Bra027636.1-P	Field mustard	cytosol	9.97	29.94
AT1G62914.1	Thale cress	mitochondrion	15.93	29.36
KRH39050	Soybean	mitochondrion	16.03	29.32
Solyc06g005220.2.1	Tomato	cytosol	12.23	29.31
PGSC0003DMT400052977	Potato	cytosol	11.72	29.31
KRH08628	Soybean	plastid	16.55	29.17
AT1G63330.2	Thale cress	cytosol	16.75	29.16
KRH08277	Soybean	plastid	16.96	29.1
KRH08639	Soybean	mitochondrion, plastid	16.86	29.03
KRH09084	Soybean	plastid	15.21	28.96
KRH31646	Soybean	cytosol	15.42	28.96
KRH08671	Soybean	cytosol, mitochondrion	16.44	28.93
Bra036649.1-P	Field mustard	cytosol	11.61	28.9
KRH08625	Soybean	plastid	16.96	28.65
KRH09154	Soybean	mitochondrion	16.34	28.6
VIT_14s0081g00110.t01	Wine grape	cytosol	14.39	28.51
VIT_14s0081g00120.t01	Wine grape	plastid	17.06	28.47
KRH39066	Soybean	cytosol	16.24	28.47
AT1G63400.1	Thale cress	cytosol, plastid	16.86	28.42
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.31	28.38
KRH25652	Soybean	cytosol, golgi	15.72	28.33
AT1G62930.1	Thale cress	plastid	18.29	28.3
Bra026882.1-P	Field mustard	cytosol	15.52	28.28
KRH40400	Soybean	plastid	16.75	28.25
KRH08607	Soybean	cytosol	16.24	28.16
AT1G63130.1	Thale cress	mitochondrion	18.19	28.1
KRH17148	Soybean	mitochondrion	15.72	28.07
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.88	28.02
VIT_14s0081g00270.t01	Wine grape	plastid	16.65	27.93
Bra036651.1-P	Field mustard	mitochondrion	15.31	27.85
Solyc06g007740.1.1	Tomato	cytosol	16.86	27.8
KRH41817	Soybean	mitochondrion	15.83	27.75
AT1G63070.1	Thale cress	mitochondrion	16.75	27.63
AT1G64583.1	Thale cress	mitochondrion	14.49	27.54
Solyc06g007300.1.1	Tomato	extracellular	16.75	27.53
PGSC0003DMT400008757	Potato	cytosol	14.08	27.51
AT5G16640.1	Thale cress	mitochondrion	14.18	27.38
PGSC0003DMT400015293	Potato	mitochondrion	17.16	27.38
PGSC0003DMT400015298	Potato	mitochondrion	17.16	27.38
AT1G12300.1	Thale cress	mitochondrion	17.88	27.32
Bra026884.1-P	Field mustard	cytosol	12.85	27.23
Bra027029.1-P	Field mustard	mitochondrion	6.78	27.16
AT1G64580.1	Thale cress	mitochondrion	14.59	27.15
AT1G62910.1	Thale cress	mitochondrion	17.57	27.06
AT1G62670.1	Thale cress	mitochondrion	17.47	26.98
KRH09121	Soybean	mitochondrion	14.8	26.97
AT1G62720.1	Thale cress	mitochondrion	13.36	26.8
VIT_14s0081g00280.t01	Wine grape	mitochondrion	17.57	26.76
PGSC0003DMT400008759	Potato	cytosol	8.74	26.65
PGSC0003DMT400025074	Potato	cytosol	15.11	26.63
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.05	26.62
AT1G63080.3	Thale cress	mitochondrion	16.75	26.55
AT1G62590.1	Thale cress	mitochondrion	17.27	26.5
Solyc06g007810.1.1	Tomato	cytosol	7.3	26.49
PGSC0003DMT400056665	Potato	mitochondrion	16.03	26.49
PGSC0003DMT400052971	Potato	mitochondrion	16.14	26.48
PGSC0003DMT400025087	Potato	endoplasmic reticulum	13.46	26.46
Bra006187.1-P	Field mustard	plastid	7.91	26.46
PGSC0003DMT400053185	Potato	mitochondrion	16.03	26.44
Bra021192.1-P	Field mustard	plastid	13.67	26.39
Bra026958.1-P	Field mustard	mitochondrion	17.27	26.37
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.7	26.34
Solyc04g080120.1.1	Tomato	extracellular	16.55	26.31
AT1G62680.2	Thale cress	plastid	14.8	26.28
AT1G63150.1	Thale cress	mitochondrion	16.96	26.23
Bra027026.1-P	Field mustard	mitochondrion	14.08	26.2
Bra016762.1-P	Field mustard	mitochondrion	16.34	26.19
Bra028267.1-P	Field mustard	mitochondrion	16.75	26.04
Bra026971.1-P	Field mustard	mitochondrion	16.75	25.91
PGSC0003DMT400056663	Potato	plastid	15.62	25.85
PGSC0003DMT400008760	Potato	mitochondrion	15.52	25.77
KRH09097	Soybean	plastid	15.42	25.73
AT3G22470.1	Thale cress	cytosol, mitochondrion	16.34	25.69
AT1G12775.1	Thale cress	cytosol, mitochondrion	16.96	25.62
AT1G06580.1	Thale cress	mitochondrion	13.05	25.4
VIT_14s0030g02280.t01	Wine grape	plastid	14.59	25.31
PGSC0003DMT400053556	Potato	mitochondrion	11.92	25.27
KRH09082	Soybean	cytosol	10.59	25.25
Bra026954.1-P	Field mustard	mitochondrion	16.86	25.23
KRH09095	Soybean	plastid	15.11	25.13
AT3G16710.1	Thale cress	mitochondrion	13.05	25.05
AT5G41170.1	Thale cress	mitochondrion	13.57	25.05
PGSC0003DMT400025067	Potato	cytosol	12.23	25.0
PGSC0003DMT400053182	Potato	cytosol	15.31	24.87
Bra026836.1-P	Field mustard	cytosol, mitochondrion	12.44	24.64
Bra026957.1-P	Field mustard	mitochondrion	15.21	24.54
AT4G26800.2	Thale cress	mitochondrion, plastid	12.95	24.51
Bra031731.1-P	Field mustard	mitochondrion	12.74	24.41
Bra026401.1-P	Field mustard	plastid	13.26	24.11
AT1G12700.2	Thale cress	cytosol	15.11	23.79
KRH08599	Soybean	cytosol, plastid	16.14	23.47
Bra027726.1-P	Field mustard	mitochondrion	11.31	23.35
KRH09085	Soybean	mitochondrion	15.93	22.02
VIT_14s0030g02260.t01	Wine grape	cytosol	9.97	21.9
AT1G64100.2	Thale cress	cytosol	18.09	21.84
Bra027656.1-P	Field mustard	cytosol	21.07	21.79
CDX68679	Canola	cytosol	2.57	21.74
KRH12873	Soybean	cytosol	13.77	19.25
KRH39064	Soybean	cytosol	17.57	17.65
Bra016758.1-P	Field mustard	plastid	16.75	14.06

Protein Annotations

EnsemblPlants:Zm00001d009735_P001	EnsemblPlants:Zm00001d009735_T001	EnsemblPlantsGene:Zm00001d009735	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF302	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:AQK92517.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI00084298FF	UniProt:A0A1D6FLE3	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr8:+:78597291..78602479

Molecular Weight (calculated)

108911.0 Da

IEP (calculated)

8.297

GRAVY (calculated)

-0.084

Length

973 amino acids

Sequence
(BLAST)

001: MEWNWKVGVP VKKASTGNQD HDLVVEPRSF TGSTQPSRPD VRPSSSSSSD NARAHNSDSE GLTLPDPLSI GDTWKSLVFG WVNTNNTTLS LLSSNAESAL
101: GFLHCSRGAA LKPMYHAAPV TSRRPVPPSR RPFLGSKYGG SVFSVALFLS LCRRRQRRSA HPLHHCSHHT GVVQGMSRGV SSGRRTCLEL ERIILNRHRS
201: GSLGREDALN LFDELLPQAR PASVHAFNSV LTVVARADSS SSPRHSAALA VSLFNTMARS GVNMMAANRY IIGILIRCFC TVGRLDLAFA AFALFLKMGW
301: RVQNVTLNQL IKGLCDGKRT DDAMDMVFRR MPELGYTPDV FSYNALIKGL CVEKKSQEAL ELLLHMTADG GYNCSPNVVS YSTIIDGFFK EGEVDKAYFL
401: FDEMIGQGFP PDVVTYSSLI DGLCKAQAMN KAEAILQHMF DKGVMPNTRT YNIMIRGYCS LGQLEEAVRL LKKMSGSGLQ PDVVTYILLI QYYCKIGRCA
501: EARSVFDSMV RKGQKPNSTI YHILLHGYAT KGALIDVRDL LDLMIRDGIP FEHRAFNILI CAYAKHGAVD KAMTAFTEMR QNGLRPDVVS YSTVIHILCK
601: IGRVEDAVYH FNQMVSEGLS PNIISFTSLI HGLCSIGEWK KVEELAFEMI NRGIHPDAIF MNTIMDNLCK EGRVVEAQDF FDMVIHIGVK PNVVSYNTLI
701: DGYCFVGKMD ESIKQFDRMV SIGLRPDSWT YNALLNGYFK NGRVEDALAL YREMFRKDVK FCAITSNIIL HGLFQAGRIV AARELYMKMV DRGTQLRIET
801: YNTVLGGLCE NSCVDEALRM FEDLRSKEFE LDVWTFNIVI NALLKVGRID EAKSLFSAMV LRGPVPHVIT YSLMIKSRIE EGLLEESDDL FLSMEKNGCA
901: ADSHMLNVII RRLLEKGDVR RAGTYLTKID EKNFSVEAST AALLIPIVSE KKYQKEVKFL PEKYHSFMQP RDD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.