Factsheet for TraesCS6A01G014800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	32.49	91.7
TraesCS6A01G014600.1	Wheat	cytosol	49.3	89.11
TraesCS6A01G015000.1	Wheat	mitochondrion	46.78	80.48
TraesCSU01G089800.1	Wheat	mitochondrion	39.36	80.06
HORVU1Hr1G018190.2	Barley	cytosol	31.37	78.6
HORVU6Hr1G002890.6	Barley	cytosol, plastid	76.89	69.06
TraesCS6A01G083000.1	Wheat	cytosol	39.64	62.06
Os10t0497366-00	Rice	mitochondrion	31.09	55.36
Os10t0495100-01	Rice	cytosol, mitochondrion	34.45	53.36
OQU88594	Sorghum	cytosol	37.96	51.92
Os08t0248400-01	Rice	mitochondrion	31.93	51.82
Os10t0497300-01	Rice	mitochondrion	57.0	51.26
Os10t0495200-01	Rice	mitochondrion	55.46	50.64
Zm00001d018982_P001	Maize	mitochondrion	24.65	50.29
Os10t0497432-01	Rice	mitochondrion	18.63	50.0
Os10t0499500-01	Rice	mitochondrion	35.43	50.0
Zm00001d009733_P001	Maize	cytosol	55.46	49.81
EER95949	Sorghum	mitochondrion	45.66	49.17
Os10t0501700-00	Rice	cytosol	31.09	48.9
KXG34536	Sorghum	mitochondrion	37.53	46.85
Os08t0107800-01	Rice	mitochondrion	40.9	46.79
Os08t0107700-01	Rice	cytosol, mitochondrion	24.51	46.79
TraesCS2A01G526200.1	Wheat	golgi	44.26	46.4
TraesCS1A01G067700.1	Wheat	extracellular	21.71	45.99
Os08t0110200-01	Rice	mitochondrion	50.42	45.11
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	31.79	44.42
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.25	43.92
TraesCS2A01G531000.1	Wheat	golgi	41.74	43.89
TraesCS2A01G531100.1	Wheat	cytosol	34.87	43.76
TraesCS1A01G031600.1	Wheat	cytosol	40.48	43.66
TraesCS2A01G530600.1	Wheat	cytosol	44.96	41.96
TraesCS1A01G054800.1	Wheat	cytosol	34.17	41.92
TraesCS1A01G067600.1	Wheat	mitochondrion	47.62	41.82
TraesCS1A01G073800.1	Wheat	mitochondrion	19.33	41.44
TraesCS1A01G067000.1	Wheat	mitochondrion	41.18	41.06
Zm00001d009735_P001	Maize	cytosol	55.74	40.9
TraesCS1A01G055800.1	Wheat	mitochondrion	43.7	40.47
TraesCS1A01G054700.2	Wheat	mitochondrion	45.8	40.27
TraesCS1A01G054500.1	Wheat	mitochondrion	43.7	40.0
TraesCS1A01G073700.1	Wheat	cytosol	21.43	39.74
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	39.78	39.61
TraesCS1A01G067400.1	Wheat	mitochondrion	45.66	39.52
TraesCS6A01G311600.1	Wheat	mitochondrion	46.22	39.47
TraesCS1A01G056000.1	Wheat	cytosol	22.13	39.3
TraesCS1A01G031700.1	Wheat	plastid	40.76	39.27
TraesCS1A01G073600.1	Wheat	mitochondrion	21.29	38.78
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	27.31	38.77
TraesCS1A01G057300.1	Wheat	cytosol	38.52	38.3
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	25.49	37.6
TraesCS1A01G067800.1	Wheat	cytosol	19.47	37.17
TraesCS1A01G055600.1	Wheat	cytosol	16.67	36.62
TraesCS1A01G074000.1	Wheat	mitochondrion	13.59	34.28
Solyc06g007280.2.1	Tomato	cytosol	12.18	34.12
TraesCS1A01G055500.1	Wheat	mitochondrion	10.08	33.18
TraesCS1A01G066600.1	Wheat	mitochondrion	11.76	31.94
Solyc06g005220.2.1	Tomato	cytosol	17.23	30.3
KRH40513	Soybean	plastid	14.71	29.91
Bra036649.1-P	Field mustard	cytosol	16.25	29.67
Bra027636.1-P	Field mustard	cytosol	13.45	29.63
AT1G63330.2	Thale cress	cytosol	22.97	29.34
KRH39050	Soybean	mitochondrion	21.85	29.32
PGSC0003DMT400052977	Potato	cytosol	15.97	29.31
Bra027029.1-P	Field mustard	mitochondrion	9.94	29.22
KRH39054	Soybean	cytosol	20.31	29.18
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.33	28.93
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.45	28.91
KRH39004	Soybean	cytosol	20.03	28.77
Solyc06g007810.1.1	Tomato	cytosol	10.64	28.36
Bra026882.1-P	Field mustard	cytosol	21.15	28.28
KRH39074	Soybean	cytosol	19.61	28.17
KRH08636	Soybean	cytosol	20.59	28.16
VIT_14s0081g00110.t01	Wine grape	cytosol	19.33	28.11
AT1G62930.1	Thale cress	plastid	24.65	27.98
KRH39057	Soybean	cytosol	19.47	27.97
KRH31646	Soybean	cytosol	20.17	27.8
VIT_14s0081g00120.t01	Wine grape	plastid	22.55	27.62
KRH41817	Soybean	mitochondrion	21.43	27.57
PGSC0003DMT400008757	Potato	cytosol	19.19	27.51
Solyc06g007740.1.1	Tomato	cytosol	22.69	27.46
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.17	27.43
KRH39112	Soybean	cytosol	19.05	27.36
PGSC0003DMT400025074	Potato	cytosol	21.15	27.36
VIT_14s0081g00270.t01	Wine grape	plastid	22.13	27.24
Bra026884.1-P	Field mustard	cytosol	17.51	27.23
KRH39072	Soybean	cytosol	18.91	27.22
AT1G63130.1	Thale cress	mitochondrion	23.95	27.14
AT1G63400.1	Thale cress	cytosol, plastid	21.71	26.86
AT1G62670.1	Thale cress	mitochondrion	23.67	26.83
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.25	26.82
KRH08628	Soybean	plastid	20.73	26.81
KRH09084	Soybean	plastid	19.19	26.81
KRH08671	Soybean	cytosol, mitochondrion	20.73	26.76
AT1G12620.1	Thale cress	cytosol, mitochondrion	23.25	26.73
Solyc06g007300.1.1	Tomato	extracellular	22.13	26.69
PGSC0003DMT400008759	Potato	cytosol	11.9	26.65
AT1G62910.1	Thale cress	mitochondrion	23.53	26.58
Bra031731.1-P	Field mustard	mitochondrion	18.91	26.57
Bra026971.1-P	Field mustard	mitochondrion	23.39	26.55
AT1G12300.1	Thale cress	mitochondrion	23.67	26.53
AT1G62590.1	Thale cress	mitochondrion	23.53	26.5
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.35	26.46
KRH48615	Soybean	mitochondrion	20.17	26.42
AT5G16640.1	Thale cress	mitochondrion	18.63	26.39
KRH08277	Soybean	plastid	20.87	26.28
AT1G63150.1	Thale cress	mitochondrion	23.11	26.23
Bra026958.1-P	Field mustard	mitochondrion	23.39	26.22
KRH08607	Soybean	cytosol	20.59	26.2
Bra036651.1-P	Field mustard	mitochondrion	19.61	26.17
AT1G62914.1	Thale cress	mitochondrion	19.33	26.14
AT1G63070.1	Thale cress	mitochondrion	21.57	26.1
PGSC0003DMT400025067	Potato	cytosol	17.37	26.05
AT1G62720.1	Thale cress	mitochondrion	17.65	25.98
PGSC0003DMT400053185	Potato	mitochondrion	21.43	25.93
KRH17148	Soybean	mitochondrion	19.75	25.87
KRH08639	Soybean	mitochondrion, plastid	20.45	25.84
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.61	25.78
KRH39066	Soybean	cytosol	20.03	25.77
Bra016762.1-P	Field mustard	mitochondrion	21.85	25.7
AT3G16710.1	Thale cress	mitochondrion	18.21	25.64
AT1G63080.3	Thale cress	mitochondrion	21.99	25.57
Bra028267.1-P	Field mustard	mitochondrion	22.41	25.56
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.83	25.51
KRH09082	Soybean	cytosol	14.57	25.49
KRH40400	Soybean	plastid	20.59	25.48
AT1G64580.1	Thale cress	mitochondrion	18.63	25.43
Bra027026.1-P	Field mustard	mitochondrion	18.63	25.43
PGSC0003DMT400052971	Potato	mitochondrion	21.01	25.3
CDX68679	Canola	cytosol	4.06	25.22
KRH25652	Soybean	cytosol, golgi	19.05	25.19
VIT_14s0030g02280.t01	Wine grape	plastid	19.75	25.13
Bra006187.1-P	Field mustard	plastid	10.22	25.09
AT1G64583.1	Thale cress	mitochondrion	17.93	25.0
Bra021192.1-P	Field mustard	plastid	17.65	25.0
KRH08625	Soybean	plastid	20.17	25.0
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.67	24.95
PGSC0003DMT400015293	Potato	mitochondrion	21.29	24.92
PGSC0003DMT400015298	Potato	mitochondrion	21.29	24.92
KRH09121	Soybean	mitochondrion	18.63	24.91
PGSC0003DMT400056663	Potato	plastid	20.45	24.83
AT1G62680.2	Thale cress	plastid	19.05	24.82
PGSC0003DMT400056665	Potato	mitochondrion	20.45	24.79
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.27	24.69
KRH09154	Soybean	mitochondrion	19.19	24.64
AT1G06580.1	Thale cress	mitochondrion	17.23	24.6
PGSC0003DMT400008760	Potato	mitochondrion	20.17	24.57
OQU88581	Sorghum	cytosol	37.25	24.47
Bra026954.1-P	Field mustard	mitochondrion	22.27	24.46
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.81	24.44
Solyc04g080120.1.1	Tomato	extracellular	20.87	24.35
PGSC0003DMT400053182	Potato	cytosol	20.31	24.21
PGSC0003DMT400053556	Potato	mitochondrion	15.41	23.97
AT1G12700.2	Thale cress	cytosol	20.45	23.62
AT4G26800.2	Thale cress	mitochondrion, plastid	16.95	23.54
AT5G41170.1	Thale cress	mitochondrion	16.81	22.77
Bra026957.1-P	Field mustard	mitochondrion	19.05	22.55
Bra027726.1-P	Field mustard	mitochondrion	14.85	22.51
Bra026401.1-P	Field mustard	plastid	16.81	22.43
KRH09095	Soybean	plastid	18.35	22.39
KRH09097	Soybean	plastid	18.21	22.3
KRH08599	Soybean	cytosol, plastid	20.31	21.67
AT1G64100.2	Thale cress	cytosol	23.67	20.97
VIT_14s0030g02260.t01	Wine grape	cytosol	12.89	20.77
KRH09085	Soybean	mitochondrion	19.05	19.32
Bra027656.1-P	Field mustard	cytosol	24.23	18.38
KRH12873	Soybean	cytosol	17.51	17.96
KRH39064	Soybean	cytosol	21.57	15.89
Bra016758.1-P	Field mustard	plastid	21.99	13.55

Protein Annotations

EnsemblPlants:TraesCS6A01G014800.1	EnsemblPlantsGene:TraesCS6A01G014800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:-:7173817..7175961

Molecular Weight (calculated)

79830.6 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.007

Length

714 amino acids

Sequence
(BLAST)

001: MRRRLVPVGS RLLERNIEHR YRSRNIGTED ALNLFDELIQ VAGPSSVRAI NYLTVVGRDC PAIGVSLFNR VARAKVPPHN ITYGILVDCC CRAGRLDLGH
101: AGMGHVIKLG FAAEAIVNFS HLLKAICAEK KTSYAMDIVL RIMPEFNCIP NIFSYSILLK GLCNEKRSQE ALELIHMMID HGGSCQPNVV SYSTVLDGLL
201: KEGEVGKAYS LFCVMLQRGI SPNAVTCTSI ISGMCKVHVM DKAEEVLQQM TDRGILPNSA TYNSLIHGYY SLGWCKEVDR ILKEMSRNGV QPNVVTYNIQ
301: LDYLCKSRRC AEARKIFDSM VSLGQKPDVT TYSILLHGYA MEKSFHDMLC LIDLMVGNGI APNHYVYNIL ISAYAKEEMV DEVMHIFTKM RQKGLNPDAV
401: SYGTVIDLLS RIGRMDDAMS QFAQIITEGL APDIIVFNSL ISGFCSCGKW EKVHELFSEM LDRGICPDRV FFNTVMDHLC KNGRVMEAQD VFDLMVHMGV
501: KPFVRDYNTL IHGYCLVGKM DEGRKLLDNM FSIGLKPDDF TYSILIDGYS KKGRIDDALI IVREMLDGKV KPSIITFNIM IGALLKGGRK EEAKDLFDGI
601: WAKGLVPDVV TYSLMIQKLI EEGSLQESDD LFISMEKNGC AADSQMLNAI VRSLLQKGEV PRAGTYLSKI DERRFTPEAS TASLLTALVS EGKGQEYKEL
701: LPEKYHSFLE QGTD

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.