CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95949	Sorghum	mitochondrion	94.06	81.15
OQU88594	Sorghum	cytosol	58.22	63.79
TraesCSU01G089700.1	Wheat	mitochondrion	38.11	45.23
TraesCSU01G090200.1	Wheat	cytosol	33.74	43.67
TraesCSU01G089800.1	Wheat	mitochondrion	25.7	41.88
TraesCS6A01G015000.1	Wheat	mitochondrion	29.02	40.0
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	22.55	39.69
HORVU1Hr1G018190.2	Barley	cytosol	19.58	39.3
TraesCS6A01G083000.1	Wheat	cytosol	31.12	39.04
TraesCS6D01G017800.1	Wheat	cytosol	35.84	38.17
OQU82832	Sorghum	cytosol	19.06	38.11
TraesCS6D01G017700.1	Wheat	plastid	35.31	37.83
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	16.61	37.55
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	46.85	37.53
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	24.83	37.47
TraesCS6D01G047700.1	Wheat	mitochondrion	44.93	37.19
TraesCS6D01G076500.1	Wheat	plastid	29.37	37.09
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	45.98	36.78
HORVU6Hr1G014310.1	Barley	mitochondrion	44.06	36.68
TraesCS6B01G021600.1	Wheat	mitochondrion	45.8	36.59
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	45.63	36.5
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	44.93	35.94
TraesCS6B01G114300.1	Wheat	cytosol	24.3	35.73
TraesCS6A01G014600.1	Wheat	cytosol	23.25	33.67
OQU88581	Sorghum	cytosol	62.94	33.12
OQU82856	Sorghum	cytosol	43.53	33.11
Bra027636.1-P	Field mustard	cytosol	18.53	32.72
KXG27690	Sorghum	cytosol, plastid	41.61	32.56
KRH40513	Soybean	plastid	19.93	32.48
HORVU6Hr1G002890.6	Barley	cytosol, plastid	43.53	31.32
KXG19780	Sorghum	cytosol	32.34	31.3
EES07882	Sorghum	cytosol	42.48	31.27
OQU82831	Sorghum	cytosol	33.04	30.83
Bra027029.1-P	Field mustard	mitochondrion	12.94	30.45
OQU82823	Sorghum	cytosol	42.31	30.36
OQU82827	Sorghum	cytosol	42.31	30.36
Solyc06g007280.2.1	Tomato	cytosol	13.46	30.2
OQU80148	Sorghum	mitochondrion	38.29	30.12
Bra036649.1-P	Field mustard	cytosol	20.28	29.67
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.13	28.93
EES09203	Sorghum	cytosol	40.03	28.7
KRH39054	Soybean	cytosol	24.65	28.37
KRH39050	Soybean	mitochondrion	26.22	28.2
AT5G16640.1	Thale cress	mitochondrion	24.83	28.17
KXG35774	Sorghum	cytosol, mitochondrion	23.25	28.12
OQU82836	Sorghum	cytosol	29.72	27.78
AT3G16710.1	Thale cress	mitochondrion	24.48	27.61
KXG28799	Sorghum	plastid	36.54	27.5
Bra006187.1-P	Field mustard	plastid	13.99	27.49
KRH39057	Soybean	cytosol	23.78	27.36
AT1G64583.1	Thale cress	mitochondrion	24.48	27.34
KRH39004	Soybean	cytosol	23.6	27.16
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	24.83	27.05
Bra036651.1-P	Field mustard	mitochondrion	25.17	26.92
Solyc06g005220.2.1	Tomato	cytosol	19.06	26.85
AT1G62720.1	Thale cress	mitochondrion	22.73	26.8
KRH39074	Soybean	cytosol	23.25	26.76
Bra025516.1-P	Field mustard	cytosol, mitochondrion	22.2	26.62
Bra021192.1-P	Field mustard	plastid	23.43	26.59
AT1G63400.1	Thale cress	cytosol, plastid	26.57	26.34
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.25	26.34
KRH39072	Soybean	cytosol	22.73	26.21
KRH48615	Soybean	mitochondrion	24.83	26.05
KRH08636	Soybean	cytosol	23.6	25.86
AT1G64580.1	Thale cress	mitochondrion	23.6	25.81
KRH39112	Soybean	cytosol	22.38	25.75
KRH08277	Soybean	plastid	25.35	25.57
PGSC0003DMT400052977	Potato	cytosol	17.31	25.45
Bra027026.1-P	Field mustard	mitochondrion	23.25	25.43
KRH39066	Soybean	cytosol	24.65	25.41
AT1G06580.1	Thale cress	mitochondrion	22.2	25.4
PGSC0003DMT400008759	Potato	cytosol	14.16	25.39
VIT_14s0081g00120.t01	Wine grape	plastid	25.87	25.39
KRH08671	Soybean	cytosol, mitochondrion	24.48	25.32
AT1G63330.2	Thale cress	cytosol	24.65	25.22
AT4G26800.2	Thale cress	mitochondrion, plastid	22.55	25.1
AT5G41170.1	Thale cress	mitochondrion	23.08	25.05
KRH41817	Soybean	mitochondrion	24.3	25.05
VIT_14s0081g00270.t01	Wine grape	plastid	25.35	25.0
AT1G62680.2	Thale cress	plastid	23.78	24.82
AT1G62930.1	Thale cress	plastid	27.27	24.8
KRH09082	Soybean	cytosol	17.66	24.75
Bra026882.1-P	Field mustard	cytosol	23.08	24.72
KRH09084	Soybean	plastid	22.03	24.66
Bra026884.1-P	Field mustard	cytosol	19.76	24.62
AT1G62914.1	Thale cress	mitochondrion	22.55	24.43
KRH17148	Soybean	mitochondrion	23.25	24.4
KRH08628	Soybean	plastid	23.43	24.28
KRH08639	Soybean	mitochondrion, plastid	23.95	24.25
VIT_14s0081g00110.t01	Wine grape	cytosol	20.8	24.24
AT1G63130.1	Thale cress	mitochondrion	26.57	24.13
KRH09154	Soybean	mitochondrion	23.43	24.1
KRH08607	Soybean	cytosol	23.6	24.06
VIT_14s0030g02280.t01	Wine grape	plastid	23.6	24.06
AT1G63150.1	Thale cress	mitochondrion	26.4	24.01
AT1G12620.1	Thale cress	cytosol, mitochondrion	26.05	23.99
AT1G63080.3	Thale cress	mitochondrion	25.7	23.94
KRH31646	Soybean	cytosol	21.68	23.94
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.87	23.91
PGSC0003DMT400008757	Potato	cytosol	20.8	23.9
AT1G62910.1	Thale cress	mitochondrion	26.4	23.89
AT1G12300.1	Thale cress	mitochondrion	26.57	23.86
OQU82834	Sorghum	cytosol	39.69	23.57
KRH08625	Soybean	plastid	23.6	23.44
KRH40400	Soybean	plastid	23.6	23.4
Bra026971.1-P	Field mustard	mitochondrion	25.7	23.37
PGSC0003DMT400025074	Potato	cytosol	22.55	23.37
Bra026401.1-P	Field mustard	plastid	21.85	23.36
AT1G62670.1	Thale cress	mitochondrion	25.7	23.33
OQU82833	Sorghum	cytosol	18.18	23.21
AT1G62590.1	Thale cress	mitochondrion	25.7	23.19
Bra027726.1-P	Field mustard	mitochondrion	19.06	23.14
Solyc06g007810.1.1	Tomato	cytosol	10.84	23.13
KRH09121	Soybean	mitochondrion	21.5	23.03
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.7	23.0
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.76	22.83
PGSC0003DMT400056665	Potato	mitochondrion	23.43	22.75
Bra016762.1-P	Field mustard	mitochondrion	24.13	22.73
PGSC0003DMT400025067	Potato	cytosol	18.88	22.69
PGSC0003DMT400053556	Potato	mitochondrion	18.18	22.66
Bra031731.1-P	Field mustard	mitochondrion	20.1	22.64
Bra026958.1-P	Field mustard	mitochondrion	25.17	22.61
KRH25652	Soybean	cytosol, golgi	21.33	22.59
Bra028267.1-P	Field mustard	mitochondrion	24.65	22.52
Bra026954.1-P	Field mustard	mitochondrion	25.52	22.46
Solyc06g007740.1.1	Tomato	cytosol	23.08	22.37
PGSC0003DMT400015293	Potato	mitochondrion	23.78	22.3
PGSC0003DMT400015298	Potato	mitochondrion	23.78	22.3
Solyc04g080120.1.1	Tomato	extracellular	23.78	22.22
PGSC0003DMT400008760	Potato	mitochondrion	22.55	22.01
Solyc06g007300.1.1	Tomato	extracellular	22.55	21.79
Bra027658.1-P	Field mustard	cytosol, mitochondrion	20.63	21.73
PGSC0003DMT400056663	Potato	plastid	22.2	21.6
Bra026957.1-P	Field mustard	mitochondrion	22.73	21.56
AT1G63070.1	Thale cress	mitochondrion	22.2	21.53
AT1G12700.2	Thale cress	cytosol	23.25	21.52
AT1G12775.1	Thale cress	cytosol, mitochondrion	24.13	21.43
KRH09097	Soybean	plastid	21.68	21.27
PGSC0003DMT400052971	Potato	mitochondrion	22.03	21.25
Bra026836.1-P	Field mustard	cytosol, mitochondrion	18.18	21.18
KRH09095	Soybean	plastid	21.33	20.85
PGSC0003DMT400053185	Potato	mitochondrion	21.5	20.85
KRH08599	Soybean	cytosol, plastid	23.6	20.18
PGSC0003DMT400053182	Potato	cytosol	20.63	19.7
VIT_14s0030g02260.t01	Wine grape	cytosol	14.51	18.74
AT1G64100.2	Thale cress	cytosol	24.65	17.49
KRH09085	Soybean	mitochondrion	21.5	17.47
Bra027656.1-P	Field mustard	cytosol	28.67	17.43
CDX68679	Canola	cytosol	3.15	15.65
KRH12873	Soybean	cytosol	18.53	15.23
KRH39064	Soybean	cytosol	24.65	14.55
Bra016758.1-P	Field mustard	plastid	25.87	12.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1B6Q9D7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG34536	ProteinID:KXG34536	ProteinID:KXG34536.1	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3002G054100	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00081ACC18	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:5155027..5157017

Molecular Weight (calculated)

63428.3 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.045

Length

572 amino acids

Sequence
(BLAST)

001: MSSRTCLKKL KRIIGRRIRS GSLSAEAARQ LCNEVLPSIQ YRSPPPAASA AARRWRADRR PSWELEQFIG ECYRSGDLGP EDALDLFDEL LHRARPGSIY
101: ALNQLLTTVA RAPVSSSVAP DIATFGILIS CCCDAGCLNL GFAALGQIIK TGLRADAVAF TPLLRTLCAK KRTKGDVGKA YTLFCKMLDH GIPPNVVTCN
201: SVIDGLCKVQ AMDKAEAVLQ QMIDEHIMPN CTTYNSLIHG YLSSGQWTEA VRILKEMSRD GQRPNVVTYN MLIDCLCKSG FHAEAREIFN SMIQSGPKPD
301: ATTYGSLLHG YATEGNLVEM NNVKDLMVQN GMRSNHHTFS IEIYAYCKCG RLDEASLTFI KMQQLGFMPD IVTYTTVIDG LCKIGRLDDA MSRFCQMIDD
401: GLSPNIITFT TLIHGFSMYG KWEKAEELFY EMMDRGIPPD VTIFTAMIDR LFKEGKVTEA QKLFDLMPRA GAKPNVVSYN TMIHGYFIAG EVGEVMKLLD
501: DMLLIGLKPT AVTFNTLLDG MVSMGLKPDV DTCKTLIDSC CEDGRIEDIL TLFREMLGKA DKTDTITENI KL

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.