CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82833	Sorghum	cytosol	53.13	70.09
KXG27690	Sorghum	cytosol, plastid	81.39	65.8
OQU80148	Sorghum	mitochondrion	79.02	64.24
OQU82836	Sorghum	cytosol	65.14	62.91
EES07882	Sorghum	cytosol	77.83	59.2
OQU82823	Sorghum	cytosol	77.33	57.34
OQU82827	Sorghum	cytosol	77.33	57.34
OQU82831	Sorghum	cytosol	57.7	55.63
EES09203	Sorghum	cytosol	73.27	54.26
OQU82834	Sorghum	cytosol	70.05	42.99
OQU82856	Sorghum	cytosol	52.96	41.62
Os10t0495200-01	Rice	mitochondrion	54.31	41.05
OQU82832	Sorghum	cytosol	19.46	40.21
Os10t0497300-01	Rice	mitochondrion	52.96	39.42
Os08t0110200-01	Rice	mitochondrion	51.44	38.1
Os10t0501700-00	Rice	cytosol	27.92	36.34
KXG35774	Sorghum	cytosol, mitochondrion	26.73	33.4
Os08t0107800-01	Rice	mitochondrion	34.86	33.01
KXG28799	Sorghum	plastid	41.62	32.37
KXG34536	Sorghum	mitochondrion	31.3	32.34
Os10t0495100-01	Rice	cytosol, mitochondrion	24.7	31.67
Os10t0497366-00	Rice	mitochondrion	20.3	29.93
OQU88594	Sorghum	cytosol	26.4	29.89
EER95949	Sorghum	mitochondrion	33.33	29.71
Os10t0499500-01	Rice	mitochondrion	24.87	29.05
Os08t0248400-01	Rice	mitochondrion	20.98	28.18
Solyc06g007810.1.1	Tomato	cytosol	12.69	27.99
CDX68679	Canola	cytosol	5.08	26.09
Os10t0497432-01	Rice	mitochondrion	11.34	25.19
PGSC0003DMT400008759	Potato	cytosol	13.54	25.08
Bra006187.1-P	Field mustard	plastid	11.84	24.05
VIT_14s0081g00120.t01	Wine grape	plastid	22.17	22.47
Bra026836.1-P	Field mustard	cytosol, mitochondrion	18.61	22.4
Bra026882.1-P	Field mustard	cytosol	19.8	21.91
KRH48615	Soybean	mitochondrion	20.14	21.83
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.61	21.78
KRH39057	Soybean	cytosol	18.27	21.73
KRH39004	Soybean	cytosol	18.1	21.53
KRH39054	Soybean	cytosol	18.1	21.53
Bra021192.1-P	Field mustard	plastid	18.27	21.43
KRH31646	Soybean	cytosol	18.61	21.24
VIT_14s0081g00270.t01	Wine grape	plastid	20.81	21.21
KRH39072	Soybean	cytosol	17.77	21.17
KRH39074	Soybean	cytosol	17.77	21.13
KRH08636	Soybean	cytosol	18.61	21.07
Bra036649.1-P	Field mustard	cytosol	13.87	20.97
KRH09084	Soybean	plastid	18.1	20.94
PGSC0003DMT400008757	Potato	cytosol	17.6	20.88
AT1G63330.2	Thale cress	cytosol	19.63	20.75
KRH39112	Soybean	cytosol	17.43	20.72
AT5G16640.1	Thale cress	mitochondrion	17.6	20.63
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.66	20.61
VIT_12s0028g02320.t01	Wine grape	mitochondrion	16.58	20.55
AT1G62720.1	Thale cress	mitochondrion	16.75	20.41
AT1G12300.1	Thale cress	mitochondrion	22.0	20.41
AT1G62930.1	Thale cress	plastid	21.66	20.35
KRH08607	Soybean	cytosol	19.29	20.32
Os08t0107700-01	Rice	cytosol, mitochondrion	12.86	20.32
AT3G16710.1	Thale cress	mitochondrion	17.43	20.32
KRH08277	Soybean	plastid	19.46	20.28
Bra016762.1-P	Field mustard	mitochondrion	20.81	20.26
KRH40513	Soybean	plastid	12.01	20.23
Bra027029.1-P	Field mustard	mitochondrion	8.29	20.16
KRH08625	Soybean	plastid	19.63	20.14
KRH39050	Soybean	mitochondrion	18.1	20.11
AT1G64580.1	Thale cress	mitochondrion	17.77	20.08
KRH39066	Soybean	cytosol	18.78	20.0
PGSC0003DMT400015293	Potato	mitochondrion	20.64	20.0
PGSC0003DMT400015298	Potato	mitochondrion	20.64	20.0
VIT_14s0081g00110.t01	Wine grape	cytosol	16.58	19.96
KRH08628	Soybean	plastid	18.61	19.93
KRH41817	Soybean	mitochondrion	18.61	19.82
KRH17148	Soybean	mitochondrion	18.27	19.82
Bra036651.1-P	Field mustard	mitochondrion	17.94	19.81
Bra027726.1-P	Field mustard	mitochondrion	15.74	19.75
KRH08671	Soybean	cytosol, mitochondrion	18.44	19.71
KRH08639	Soybean	mitochondrion, plastid	18.78	19.65
Bra026958.1-P	Field mustard	mitochondrion	21.15	19.62
KRH09154	Soybean	mitochondrion	18.44	19.6
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.74	19.5
KRH25652	Soybean	cytosol, golgi	17.77	19.44
AT1G62590.1	Thale cress	mitochondrion	20.81	19.4
PGSC0003DMT400052977	Potato	cytosol	12.69	19.28
AT1G62670.1	Thale cress	mitochondrion	20.47	19.21
AT1G63130.1	Thale cress	mitochondrion	20.47	19.21
AT1G62680.2	Thale cress	plastid	17.77	19.16
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.92	19.05
PGSC0003DMT400025074	Potato	cytosol	17.77	19.02
Solyc06g005220.2.1	Tomato	cytosol	13.03	18.97
Solyc04g080120.1.1	Tomato	extracellular	19.63	18.95
AT1G64583.1	Thale cress	mitochondrion	16.41	18.95
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.47	18.94
Bra028267.1-P	Field mustard	mitochondrion	19.97	18.85
Solyc06g007300.1.1	Tomato	extracellular	18.78	18.75
VIT_14s0030g02260.t01	Wine grape	cytosol	14.04	18.74
KRH09121	Soybean	mitochondrion	16.92	18.73
KRH40400	Soybean	plastid	18.27	18.72
Bra026954.1-P	Field mustard	mitochondrion	20.47	18.62
AT1G63150.1	Thale cress	mitochondrion	19.8	18.6
Bra027026.1-P	Field mustard	mitochondrion	16.41	18.55
Bra027636.1-P	Field mustard	cytosol	10.15	18.52
AT1G62910.1	Thale cress	mitochondrion	19.8	18.51
Solyc06g007740.1.1	Tomato	cytosol	18.44	18.47
Bra026971.1-P	Field mustard	mitochondrion	19.63	18.44
AT1G63070.1	Thale cress	mitochondrion	18.27	18.31
AT1G63080.3	Thale cress	mitochondrion	18.95	18.24
AT1G63400.1	Thale cress	cytosol, plastid	17.77	18.2
VIT_14s0030g02280.t01	Wine grape	plastid	17.26	18.18
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.8	18.17
PGSC0003DMT400056665	Potato	mitochondrion	18.1	18.17
Bra026957.1-P	Field mustard	mitochondrion	18.44	18.08
AT1G12700.2	Thale cress	cytosol	18.78	17.96
PGSC0003DMT400008760	Potato	mitochondrion	17.77	17.92
Bra026884.1-P	Field mustard	cytosol	13.87	17.86
PGSC0003DMT400056663	Potato	plastid	17.77	17.86
KRH09097	Soybean	plastid	17.6	17.84
KRH09095	Soybean	plastid	17.6	17.78
PGSC0003DMT400052971	Potato	mitochondrion	17.77	17.71
AT5G41170.1	Thale cress	mitochondrion	15.74	17.65
PGSC0003DMT400053185	Potato	mitochondrion	17.6	17.63
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.44	17.61
AT1G06580.1	Thale cress	mitochondrion	14.72	17.4
PGSC0003DMT400053182	Potato	cytosol	17.6	17.36
Bra031731.1-P	Field mustard	mitochondrion	14.72	17.13
KRH09082	Soybean	cytosol	11.68	16.91
Bra026401.1-P	Field mustard	plastid	15.23	16.82
AT4G26800.2	Thale cress	mitochondrion, plastid	14.55	16.73
PGSC0003DMT400025087	Potato	endoplasmic reticulum	13.87	16.57
AT1G62914.1	Thale cress	mitochondrion	14.72	16.48
KRH08599	Soybean	cytosol, plastid	18.61	16.44
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.06	16.39
PGSC0003DMT400053556	Potato	mitochondrion	12.69	16.34
PGSC0003DMT400025067	Potato	cytosol	13.03	16.18
OQU88581	Sorghum	cytosol	29.27	15.92
KRH09085	Soybean	mitochondrion	18.78	15.77
Bra027656.1-P	Field mustard	cytosol	23.18	14.56
AT1G64100.2	Thale cress	cytosol	19.46	14.27
KRH39064	Soybean	cytosol	20.3	12.38
Solyc06g007280.2.1	Tomato	cytosol	5.08	11.76
KRH12873	Soybean	cytosol	13.54	11.49
Bra016758.1-P	Field mustard	plastid	20.14	10.27

Protein Annotations

EnsemblPlants:KXG19780	EnsemblPlantsGene:SORBI_3010G113900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:KXG19780	ProteinID:KXG19780.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0007F2C61E	UniProt:A0A194YII5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr10:+:12005367..12007565

Molecular Weight (calculated)

65779.7 Da

IEP (calculated)

8.223

GRAVY (calculated)

0.177

Length

591 amino acids

Sequence
(BLAST)

001: MSRRVSAAAD RCLELERVIA SRARSGSLGL DEALKLFDEL LHCARPASVR AFNQLLTVVS RAGCSSASER VVSLFTRMAR ECSSKVAPNA CTYSILIGCF
101: CRMGRLEHGF AAFGLILKTG WRVNVIVISQ LLKGLCDAKR VDEATDILLL RMKGIKPDVA IYAILLHGYA TKGALSEMHS FLDLMVGNGV SPNRRIFNIM
201: FCAYAKKAMI EEAMHIFNKM RQQGLSPDVV SFGALIDALC KLGRVDDAVL QFNQMINEGV TPNIFVFSSL VYGLCTVGKW EKAEELFFEV LDQGICVDAV
301: FFNTLMCNLC NEGRVMEAQR LIDLMIRVGV RPNVISYNTL VAGHCLTGRI DEAAKLLDVM VSNGLKPNEF TYTILLRGYC KARRVDDAYS LFREMLMKGV
401: TPVVATYNTI LHGLFQTGRF SEANELYLNM INSRTKCDIY TYNIILNGLC KNNFVDEAFK MFRRLCSKDP QLDSVTFNIM IGALLKGGRK EDAMDLFATI
501: SAYGLVPDVV TYRLIAENLI EEGSLGEFDG LFSAMEKSGT APNSHMLNAL VRRLLHRGDI SRAGVYLYKL DEKNFSLEAS TTSMLISLYS R

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.