CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34536	Sorghum	mitochondrion	33.12	62.94
EER95949	Sorghum	mitochondrion	35.97	58.97
OQU88594	Sorghum	cytosol	24.29	50.57
TraesCS6D01G017800.1	Wheat	cytosol	24.01	48.6
HORVU1Hr1G018190.2	Barley	cytosol	11.68	44.56
OQU82831	Sorghum	cytosol	24.84	44.05
TraesCS6A01G083000.1	Wheat	cytosol	18.4	43.86
TraesCS6D01G017700.1	Wheat	plastid	21.44	43.63
TraesCS6A01G014600.1	Wheat	cytosol	15.46	42.53
TraesCS6B01G114300.1	Wheat	cytosol	15.0	41.9
OQU82833	Sorghum	cytosol	15.36	37.28
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	24.47	37.25
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	24.2	36.78
TraesCS6B01G021600.1	Wheat	mitochondrion	24.2	36.73
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	24.1	36.64
TraesCSU01G089700.1	Wheat	mitochondrion	16.01	36.1
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	23.64	35.94
KXG35774	Sorghum	cytosol, mitochondrion	15.46	35.52
OQU82836	Sorghum	cytosol	19.6	34.8
TraesCSU01G090200.1	Wheat	cytosol	13.8	33.94
HORVU6Hr1G014310.1	Barley	mitochondrion	21.25	33.62
TraesCS6D01G047700.1	Wheat	mitochondrion	21.16	33.29
KXG27690	Sorghum	cytosol, plastid	22.08	32.83
Solyc06g007280.2.1	Tomato	cytosol	7.64	32.55
OQU80148	Sorghum	mitochondrion	21.62	32.32
OQU82827	Sorghum	cytosol	23.55	32.12
TraesCS6A01G015000.1	Wheat	mitochondrion	12.24	32.05
EES07882	Sorghum	cytosol	22.91	32.05
OQU82823	Sorghum	cytosol	23.46	32.0
Bra027636.1-P	Field mustard	cytosol	9.29	31.17
HORVU6Hr1G002890.6	Barley	cytosol, plastid	22.17	30.31
EES09203	Sorghum	cytosol	22.08	30.08
Solyc06g005220.2.1	Tomato	cytosol	11.13	29.8
TraesCSU01G089800.1	Wheat	mitochondrion	9.57	29.63
KXG19780	Sorghum	cytosol	15.92	29.27
Bra027029.1-P	Field mustard	mitochondrion	6.53	29.22
KXG28799	Sorghum	plastid	19.96	28.55
PGSC0003DMT400052977	Potato	cytosol	10.03	28.02
PGSC0003DMT400008759	Potato	cytosol	8.19	27.9
OQU82856	Sorghum	cytosol	18.95	27.39
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	8.19	27.38
TraesCS6D01G076500.1	Wheat	plastid	11.41	27.37
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	9.48	27.18
Solyc06g007810.1.1	Tomato	cytosol	6.62	26.87
Bra026884.1-P	Field mustard	cytosol	11.32	26.8
OQU82834	Sorghum	cytosol	23.74	26.79
VIT_14s0081g00110.t01	Wine grape	cytosol	11.78	26.07
KRH39054	Soybean	cytosol	11.87	25.96
KRH09082	Soybean	cytosol	9.66	25.74
KRH39057	Soybean	cytosol	11.68	25.55
KRH39004	Soybean	cytosol	11.59	25.35
Bra036649.1-P	Field mustard	cytosol	9.11	25.32
KRH39072	Soybean	cytosol	11.41	25.0
KRH39050	Soybean	mitochondrion	12.05	24.62
PGSC0003DMT400025067	Potato	cytosol	10.76	24.58
KRH39074	Soybean	cytosol	11.22	24.55
KRH39112	Soybean	cytosol	11.13	24.35
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	11.22	24.16
VIT_12s0028g02320.t01	Wine grape	mitochondrion	10.58	24.11
PGSC0003DMT400008757	Potato	cytosol	11.04	24.1
PGSC0003DMT400025087	Potato	endoplasmic reticulum	10.95	24.04
KRH08636	Soybean	cytosol	11.5	23.95
KRH40513	Soybean	plastid	7.64	23.65
AT1G63330.2	Thale cress	cytosol	12.05	23.43
Bra006187.1-P	Field mustard	plastid	6.26	23.37
KRH25652	Soybean	cytosol, golgi	11.41	22.96
KRH09084	Soybean	plastid	10.76	22.9
KRH39066	Soybean	cytosol	11.41	22.34
VIT_14s0081g00120.t01	Wine grape	plastid	11.96	22.3
KRH08671	Soybean	cytosol, mitochondrion	11.32	22.24
KRH17148	Soybean	mitochondrion	11.13	22.2
PGSC0003DMT400025074	Potato	cytosol	11.22	22.1
KRH08277	Soybean	plastid	11.5	22.05
KRH48615	Soybean	mitochondrion	11.04	22.02
KRH40400	Soybean	plastid	11.68	22.01
KRH31646	Soybean	cytosol	10.49	22.01
KRH08607	Soybean	cytosol	11.32	21.93
VIT_14s0081g00270.t01	Wine grape	plastid	11.68	21.9
VIT_14s0030g02260.t01	Wine grape	cytosol	8.92	21.9
KRH08625	Soybean	plastid	11.59	21.88
KRH08639	Soybean	mitochondrion, plastid	11.32	21.77
KRH08628	Soybean	plastid	11.04	21.74
Bra026882.1-P	Field mustard	cytosol	10.67	21.72
PGSC0003DMT400056665	Potato	mitochondrion	11.68	21.56
Bra031731.1-P	Field mustard	mitochondrion	10.03	21.46
KRH41817	Soybean	mitochondrion	10.95	21.44
Bra025516.1-P	Field mustard	cytosol, mitochondrion	9.38	21.38
Bra027658.1-P	Field mustard	cytosol, mitochondrion	10.67	21.36
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	10.3	21.33
OQU82832	Sorghum	cytosol	5.61	21.33
Solyc06g007740.1.1	Tomato	cytosol	11.5	21.19
AT1G63080.3	Thale cress	mitochondrion	11.96	21.17
KRH09121	Soybean	mitochondrion	10.4	21.16
AT1G62720.1	Thale cress	mitochondrion	9.38	21.03
AT1G64583.1	Thale cress	mitochondrion	9.84	20.9
AT1G12300.1	Thale cress	mitochondrion	12.24	20.88
AT5G16640.1	Thale cress	mitochondrion	9.66	20.83
AT1G62930.1	Thale cress	plastid	12.05	20.83
KRH09154	Soybean	mitochondrion	10.58	20.68
AT1G63400.1	Thale cress	cytosol, plastid	10.95	20.62
Solyc06g007300.1.1	Tomato	extracellular	11.22	20.61
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	4.78	20.55
AT3G16710.1	Thale cress	mitochondrion	9.57	20.51
AT1G62590.1	Thale cress	mitochondrion	11.96	20.5
PGSC0003DMT400015293	Potato	mitochondrion	11.5	20.49
PGSC0003DMT400015298	Potato	mitochondrion	11.5	20.49
PGSC0003DMT400053556	Potato	mitochondrion	8.65	20.48
AT1G63130.1	Thale cress	mitochondrion	11.87	20.48
AT3G22470.1	Thale cress	cytosol, mitochondrion	11.59	20.36
VIT_14s0081g00280.t01	Wine grape	mitochondrion	11.96	20.34
VIT_14s0030g02280.t01	Wine grape	plastid	10.49	20.32
PGSC0003DMT400008760	Potato	mitochondrion	10.95	20.31
Solyc04g080120.1.1	Tomato	extracellular	11.41	20.26
AT1G62910.1	Thale cress	mitochondrion	11.78	20.25
PGSC0003DMT400052971	Potato	mitochondrion	11.04	20.24
Bra026971.1-P	Field mustard	mitochondrion	11.68	20.19
AT1G12620.1	Thale cress	cytosol, mitochondrion	11.5	20.13
Bra028267.1-P	Field mustard	mitochondrion	11.59	20.13
Bra026958.1-P	Field mustard	mitochondrion	11.78	20.09
PGSC0003DMT400056663	Potato	plastid	10.86	20.07
AT1G62670.1	Thale cress	mitochondrion	11.59	20.0
AT1G63070.1	Thale cress	mitochondrion	10.86	20.0
AT1G63150.1	Thale cress	mitochondrion	11.5	19.87
Bra021192.1-P	Field mustard	plastid	9.2	19.84
PGSC0003DMT400053185	Potato	mitochondrion	10.76	19.83
Bra036651.1-P	Field mustard	mitochondrion	9.75	19.81
AT1G12775.1	Thale cress	cytosol, mitochondrion	11.59	19.57
KRH09097	Soybean	plastid	10.49	19.55
AT1G64580.1	Thale cress	mitochondrion	9.38	19.5
Bra016762.1-P	Field mustard	mitochondrion	10.86	19.44
Bra026954.1-P	Field mustard	mitochondrion	11.59	19.38
AT5G41170.1	Thale cress	mitochondrion	9.38	19.35
Bra026836.1-P	Field mustard	cytosol, mitochondrion	8.74	19.35
AT1G06580.1	Thale cress	mitochondrion	8.83	19.2
KRH09095	Soybean	plastid	10.3	19.15
Bra027026.1-P	Field mustard	mitochondrion	9.2	19.12
Bra026957.1-P	Field mustard	mitochondrion	10.58	19.07
AT1G62914.1	Thale cress	mitochondrion	9.2	18.94
AT1G12700.2	Thale cress	cytosol	10.76	18.93
AT1G62680.2	Thale cress	plastid	9.48	18.8
KRH08599	Soybean	cytosol, plastid	11.5	18.68
PGSC0003DMT400053182	Potato	cytosol	10.21	18.53
AT4G26800.2	Thale cress	mitochondrion, plastid	8.65	18.29
Bra026401.1-P	Field mustard	plastid	8.37	17.01
CDX68679	Canola	cytosol	1.75	16.52
KRH09085	Soybean	mitochondrion	10.67	16.48
Bra027726.1-P	Field mustard	mitochondrion	6.9	15.92
KRH12873	Soybean	cytosol	10.03	15.66
Bra027656.1-P	Field mustard	cytosol	13.34	15.41
AT1G64100.2	Thale cress	cytosol	11.13	15.01
KRH39064	Soybean	cytosol	11.96	13.42
Bra016758.1-P	Field mustard	plastid	11.59	10.87

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1W0W2K2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU88581	ProteinID:OQU88581	ProteinID:OQU88581.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G057050	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0009DC83BC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:5546273..5550944

Molecular Weight (calculated)

121631.0 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.050

Length

1087 amino acids

Sequence
(BLAST)

0001: MAEDGDNCPP NVVSYSTVIH GFFKEGEVGK AYTLFCKMLD HGIPPDVVTC NSVIDGLCKA QAMDKAEEVL QQMIDEHIMP DCTTYNSLIH GYLSLGQWKE
0101: AVQILKEMSR DGQGPNVVTY SMLINCLCKS GLRAEAREIF NSMIQSGQKP NAATYRSLLH GYATEGNLVD MNNVKDLMVQ NGMRPDRHVF NIEIYAYCKC
0201: GRLDEASLTF NKMQQLGFMP DIVTYTTVID GLCKIGRLDD AMSRFCQMID DGLSPNIITF TTLIHGFSMY GKWEKAEELF YEMMDRGIPP NVNTFNSMID
0301: RLFKEGKVTE ARKLFDLMPR AGAKPNVVSY NTMIHGYFIA GEVGEVMKLL DDMLLIGLKP NAVNLNTLLD GMLSIGLKPN VDTCKTLIDS CCEDDRIEDI
0401: LTLFREMLSK ADKTDTITEN IKLKCMKKKN KVWLNKLKRI IGRRIRSGSL SAEAARQLCD DVIQRRPPPP AVSAAARWHW DDHRPSWELE RFIGVCYRSG
0501: DLGPEDALGL FDELLLQARP GSVYALNQLP TTIAHAPVSS TVDDGPALAV SLFIRMARAG AKKVAPNIAT YNIVISCCCH AGCLNLSFAA LRQIIKTGLR
0601: TDAMIFTPML RTLCAEKRTS DAMDIVVRRM PELCSTPNVF SYNTLLEGLC DEKKCDEAVE LIHMMAEDGD NCPPNVVSYT IVIHGLFKEH EVGKAFTLFC
0701: EMLRRGIPPD VMIYRSIIDV LCKVQAMDKA EKVFRQMLDN HIMPDCTTYT SLLHGYLSLG QWKEAVRILK EMSRDGQRPD VVTYSMLINC LCKSGGHAEA
0801: REIFNSMIQN GEKPNVSTYG SMLHGYATKG DLVEMNNLLD LMVQNGVQPN HHIFNIQIYA HCKCGRLDEA MLTFNKMRQQ GLVPDIVSYG TVIDALCRIS
0901: RLDDAMVQFY QMIDYGLSPN IIVFTTLIHG FSMHGKWGKA EELFYEMMDS GIRPTVVVFV AMIDKLFKEG KVTEAQKLFD LMPYVGVKPD VVSYSTMIHG
1001: CFLTGKPDEV MKLLDDMLLI GLKPNAVNLN TLLDGMLSIG LKPNVATCKT LIDSCCEDGR IDDVLTLFRE MLSKAAKTDT VAEKIIS

Best Arabidopsis Sequence Match ( AT4G31850.1 )
(BLAST)

0001: MVALLCSASL CGDISVGDAC LVSNIKAKCR DNLVTGGLKF HALKIGSRKK HWRRKSMRCS VVSMKSSDFS GSMIRKSSKP DLSSSEEVTR GLKSFPDTDS
0101: SFSYFKSVAG NLNLVHTTET CNYMLEALRV DGKLEEMAYV FDLMQKRIIK RDTNTYLTIF KSLSVKGGLK QAPYALRKMR EFGFVLNAYS YNGLIHLLLK
0201: SRFCTEAMEV YRRMILEGFR PSLQTYSSLM VGLGKRRDID SVMGLLKEME TLGLKPNVYT FTICIRVLGR AGKINEAYEI LKRMDDEGCG PDVVTYTVLI
0301: DALCTARKLD CAKEVFEKMK TGRHKPDRVT YITLLDRFSD NRDLDSVKQF WSEMEKDGHV PDVVTFTILV DALCKAGNFG EAFDTLDVMR DQGILPNLHT
0401: YNTLICGLLR VHRLDDALEL FGNMESLGVK PTAYTYIVFI DYYGKSGDSV SALETFEKMK TKGIAPNIVA CNASLYSLAK AGRDREAKQI FYGLKDIGLV
0501: PDSVTYNMMM KCYSKVGEID EAIKLLSEMM ENGCEPDVIV VNSLINTLYK ADRVDEAWKM FMRMKEMKLK PTVVTYNTLL AGLGKNGKIQ EAIELFEGMV
0601: QKGCPPNTIT FNTLFDCLCK NDEVTLALKM LFKMMDMGCV PDVFTYNTII FGLVKNGQVK EAMCFFHQMK KLVYPDFVTL CTLLPGVVKA SLIEDAYKII
0701: TNFLYNCADQ PANLFWEDLI GSILAEAGID NAVSFSERLV ANGICRDGDS ILVPIIRYSC KHNNVSGART LFEKFTKDLG VQPKLPTYNL LIGGLLEADM
0801: IEIAQDVFLQ VKSTGCIPDV ATYNFLLDAY GKSGKIDELF ELYKEMSTHE CEANTITHNI VISGLVKAGN VDDALDLYYD LMSDRDFSPT ACTYGPLIDG
0901: LSKSGRLYEA KQLFEGMLDY GCRPNCAIYN ILINGFGKAG EADAACALFK RMVKEGVRPD LKTYSVLVDC LCMVGRVDEG LHYFKELKES GLNPDVVCYN
1001: LIINGLGKSH RLEEALVLFN EMKTSRGITP DLYTYNSLIL NLGIAGMVEE AGKIYNEIQR AGLEPNVFTF NALIRGYSLS GKPEHAYAVY QTMVTGGFSP
1101: NTGTYEQLPN RA

Arabidopsis Description

PGR3Pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ52]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.