Factsheet for TraesCS7D01G487500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G017800.1	Wheat	cytosol	65.73	87.52
HORVU1Hr1G018190.2	Barley	cytosol	32.87	82.46
TraesCS6D01G017700.1	Wheat	plastid	60.14	80.52
HORVU6Hr1G002890.6	Barley	cytosol, plastid	80.14	72.08
TraesCS6D01G047700.1	Wheat	mitochondrion	66.71	69.03
TraesCS6D01G076500.1	Wheat	plastid	43.22	68.21
Os10t0497366-00	Rice	mitochondrion	31.75	56.61
Os10t0495100-01	Rice	cytosol, mitochondrion	34.97	54.23
Os08t0248400-01	Rice	mitochondrion	32.87	53.41
OQU88594	Sorghum	cytosol	38.6	52.87
Os10t0497300-01	Rice	mitochondrion	57.62	51.89
Os10t0495200-01	Rice	mitochondrion	56.5	51.66
Os10t0497432-01	Rice	mitochondrion	19.16	51.5
Zm00001d018982_P001	Maize	mitochondrion	25.04	51.14
Os08t0107700-01	Rice	cytosol, mitochondrion	26.43	50.53
Os10t0501700-00	Rice	cytosol	31.61	49.78
Zm00001d009733_P001	Maize	cytosol	54.97	49.43
Os10t0499500-01	Rice	mitochondrion	34.97	49.41
EER95949	Sorghum	mitochondrion	44.9	48.42
Os08t0107800-01	Rice	mitochondrion	42.24	48.4
TraesCS2D01G532400.1	Wheat	cytosol	39.44	46.15
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	42.52	46.13
Os08t0110200-01	Rice	mitochondrion	51.33	45.99
KXG34536	Sorghum	mitochondrion	36.5	45.63
TraesCS1D01G058000.1	Wheat	cytosol	25.45	44.83
TraesCS1D01G076500.1	Wheat	mitochondrion	41.26	44.43
TraesCS2D01G532500.1	Wheat	plastid	41.68	43.82
TraesCS2D01G532100.1	Wheat	mitochondrion	41.68	43.06
TraesCS1D01G056700.1	Wheat	cytosol	36.22	42.67
TraesCS2D01G532600.1	Wheat	plastid	46.01	42.4
TraesCS1D01G058400.1	Wheat	cytosol	30.49	42.33
TraesCS1D01G055300.1	Wheat	cytosol	36.5	42.23
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	40.98	42.04
TraesCS6D01G083300.1	Wheat	mitochondrion	26.15	41.93
TraesCS2D01G532300.1	Wheat	plastid	45.59	41.9
TraesCS6D01G083100.1	Wheat	cytosol	28.67	41.84
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	27.97	41.58
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	45.73	41.55
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	38.88	41.31
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	45.45	41.04
TraesCS1D01G068500.1	Wheat	mitochondrion	46.57	41.01
TraesCS7D01G231400.1	Wheat	cytosol, plastid	22.8	40.45
TraesCS1D01G068800.1	Wheat	plastid	46.15	40.44
TraesCS1D01G068900.1	Wheat	mitochondrion	45.87	40.34
Zm00001d009735_P001	Maize	cytosol	54.83	40.29
TraesCS6D01G083400.1	Wheat	mitochondrion	27.69	40.16
TraesCS1D01G056200.1	Wheat	mitochondrion	46.01	39.88
TraesCS1D01G068400.1	Wheat	mitochondrion	45.59	39.61
TraesCS1D01G033000.1	Wheat	cytosol	22.38	39.6
TraesCS1D01G068700.1	Wheat	cytosol	24.2	39.41
TraesCS1D01G076400.1	Wheat	cytosol	19.86	39.12
TraesCS1D01G076900.1	Wheat	plastid	35.24	38.36
TraesCS1D01G067600.1	Wheat	cytosol	19.44	38.08
TraesCS1D01G069100.1	Wheat	mitochondrion	34.13	37.95
TraesCS6D01G290900.1	Wheat	mitochondrion	38.88	37.93
TraesCS2D01G532200.1	Wheat	cytosol	15.52	37.88
TraesCS1D01G057800.1	Wheat	mitochondrion	19.16	37.74
TraesCS1D01G057700.1	Wheat	cytosol	17.06	37.54
TraesCS1D01G058500.1	Wheat	plastid	29.79	37.37
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	17.76	37.13
TraesCS1D01G068600.1	Wheat	plastid	17.48	36.76
TraesCS1D01G076700.1	Wheat	cytosol	16.64	35.63
Solyc06g007280.2.1	Tomato	cytosol	11.89	33.33
TraesCS1D01G056600.1	Wheat	mitochondrion	9.09	32.18
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	9.93	31.14
KRH40513	Soybean	plastid	15.1	30.77
KRH39004	Soybean	cytosol	20.28	29.18
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.44	29.14
KRH39054	Soybean	cytosol	20.14	28.97
KRH31646	Soybean	cytosol	20.98	28.96
KRH39074	Soybean	cytosol	20.0	28.77
Bra036649.1-P	Field mustard	cytosol	15.66	28.64
Solyc06g005220.2.1	Tomato	cytosol	16.22	28.57
PGSC0003DMT400052977	Potato	cytosol	15.52	28.53
VIT_14s0081g00110.t01	Wine grape	cytosol	19.44	28.31
KRH39050	Soybean	mitochondrion	20.98	28.2
KRH41817	Soybean	mitochondrion	21.82	28.11
AT1G63330.2	Thale cress	cytosol	21.96	28.09
KRH39057	Soybean	cytosol	19.44	27.97
KRH39112	Soybean	cytosol	19.44	27.97
KRH39072	Soybean	cytosol	19.3	27.82
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.42	27.81
Bra027636.1-P	Field mustard	cytosol	12.59	27.78
VIT_14s0081g00120.t01	Wine grape	plastid	22.24	27.27
KRH48615	Soybean	mitochondrion	20.7	27.16
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.16	27.13
KRH08636	Soybean	cytosol	19.72	27.01
AT1G62930.1	Thale cress	plastid	23.64	26.87
Bra026882.1-P	Field mustard	cytosol	20.0	26.78
AT1G62670.1	Thale cress	mitochondrion	23.5	26.67
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.94	26.49
Solyc06g007810.1.1	Tomato	cytosol	9.93	26.49
AT1G63070.1	Thale cress	mitochondrion	21.82	26.44
VIT_14s0081g00270.t01	Wine grape	plastid	21.4	26.38
Bra026884.1-P	Field mustard	cytosol	16.92	26.36
PGSC0003DMT400008757	Potato	cytosol	18.32	26.31
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.18	26.26
KRH39066	Soybean	cytosol	20.28	26.13
AT1G62910.1	Thale cress	mitochondrion	23.08	26.11
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.52	25.93
AT1G63080.3	Thale cress	mitochondrion	22.24	25.9
AT1G63130.1	Thale cress	mitochondrion	22.8	25.87
KRH08671	Soybean	cytosol, mitochondrion	20.0	25.86
KRH09084	Soybean	plastid	18.46	25.83
Solyc06g007300.1.1	Tomato	extracellular	21.26	25.68
AT1G63400.1	Thale cress	cytosol, plastid	20.7	25.65
PGSC0003DMT400025067	Potato	cytosol	17.06	25.63
AT5G16640.1	Thale cress	mitochondrion	18.04	25.6
Solyc06g007740.1.1	Tomato	cytosol	21.12	25.59
KRH08628	Soybean	plastid	19.72	25.54
VIT_14s0030g02280.t01	Wine grape	plastid	20.0	25.49
AT1G63150.1	Thale cress	mitochondrion	22.38	25.44
Bra026958.1-P	Field mustard	mitochondrion	22.66	25.43
KRH08607	Soybean	cytosol	19.86	25.31
KRH40400	Soybean	plastid	20.42	25.3
Bra031731.1-P	Field mustard	mitochondrion	17.9	25.2
PGSC0003DMT400025074	Potato	cytosol	19.44	25.18
KRH17148	Soybean	mitochondrion	19.16	25.14
KRH08639	Soybean	mitochondrion, plastid	19.86	25.13
Bra027029.1-P	Field mustard	mitochondrion	8.53	25.1
AT1G62590.1	Thale cress	mitochondrion	22.24	25.08
PGSC0003DMT400008759	Potato	cytosol	11.19	25.08
Bra036651.1-P	Field mustard	mitochondrion	18.74	25.05
AT1G62914.1	Thale cress	mitochondrion	18.46	25.0
KRH08625	Soybean	plastid	20.14	25.0
Bra026971.1-P	Field mustard	mitochondrion	21.96	24.96
AT1G12300.1	Thale cress	mitochondrion	22.1	24.8
PGSC0003DMT400056665	Potato	mitochondrion	20.42	24.79
Bra006187.1-P	Field mustard	plastid	10.07	24.74
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.5	24.74
Bra016762.1-P	Field mustard	mitochondrion	20.98	24.71
AT1G62720.1	Thale cress	mitochondrion	16.64	24.54
KRH08277	Soybean	plastid	19.44	24.52
AT3G16710.1	Thale cress	mitochondrion	17.34	24.46
PGSC0003DMT400053185	Potato	mitochondrion	20.14	24.41
KRH09121	Soybean	mitochondrion	18.18	24.34
PGSC0003DMT400056663	Potato	plastid	20.0	24.32
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.46	24.31
Bra028267.1-P	Field mustard	mitochondrion	21.26	24.28
KRH25652	Soybean	cytosol, golgi	18.32	24.26
PGSC0003DMT400008760	Potato	mitochondrion	19.86	24.23
AT1G06580.1	Thale cress	mitochondrion	16.92	24.2
OQU88581	Sorghum	cytosol	36.78	24.2
KRH09154	Soybean	mitochondrion	18.74	24.1
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.54	24.1
AT1G64580.1	Thale cress	mitochondrion	17.62	24.09
PGSC0003DMT400052971	Potato	mitochondrion	19.86	23.95
Bra026954.1-P	Field mustard	mitochondrion	21.68	23.85
Bra021192.1-P	Field mustard	plastid	16.78	23.81
KRH09082	Soybean	cytosol	13.57	23.77
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.4	23.76
AT1G64583.1	Thale cress	mitochondrion	16.92	23.63
Bra027026.1-P	Field mustard	mitochondrion	17.2	23.52
CDX68679	Canola	cytosol	3.78	23.48
PGSC0003DMT400015293	Potato	mitochondrion	20.0	23.44
PGSC0003DMT400015298	Potato	mitochondrion	20.0	23.44
Solyc04g080120.1.1	Tomato	extracellular	19.72	23.04
AT1G62680.2	Thale cress	plastid	17.62	22.99
PGSC0003DMT400053182	Potato	cytosol	19.16	22.87
PGSC0003DMT400053556	Potato	mitochondrion	14.55	22.66
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.52	22.61
AT5G41170.1	Thale cress	mitochondrion	16.64	22.58
AT1G12700.2	Thale cress	cytosol	19.3	22.33
Bra026957.1-P	Field mustard	mitochondrion	18.74	22.22
KRH09095	Soybean	plastid	18.18	22.22
KRH09097	Soybean	plastid	18.04	22.13
Bra027726.1-P	Field mustard	mitochondrion	14.27	21.66
AT4G26800.2	Thale cress	mitochondrion, plastid	15.52	21.6
KRH08599	Soybean	cytosol, plastid	20.0	21.38
AT1G64100.2	Thale cress	cytosol	23.08	20.47
Bra026401.1-P	Field mustard	plastid	14.96	20.0
VIT_14s0030g02260.t01	Wine grape	cytosol	12.17	19.64
KRH12873	Soybean	cytosol	18.46	18.97
KRH09085	Soybean	mitochondrion	18.32	18.61
Bra027656.1-P	Field mustard	cytosol	22.66	17.22
KRH39064	Soybean	cytosol	21.4	15.79
Bra016758.1-P	Field mustard	plastid	21.26	13.11

Protein Annotations

EnsemblPlants:TraesCS7D01G487500.1	EnsemblPlantsGene:TraesCS7D01G487500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:597674985..597677132

Molecular Weight (calculated)

79982.7 Da

IEP (calculated)

6.211

GRAVY (calculated)

0.020

Length

715 amino acids

Sequence
(BLAST)

001: MSRRLVPVGR RILEQNIKAW YHAGDIGTKD ALHRFDELLQ DAGSSSIRAV NYLLTVVGRD CPALGVSLFN RVARAKVAPN SITYTILVDC CCRAGRLDLG
101: FAAMGHIIKM GFTADAIFSF SHLLKSICAE KKTSYAMDIV LRVMPELNCT PDIFSYSILF KGLCNEKRSQ EALELIHIMV EDGGCCRPDV VSYSTVIDGL
201: LKEGEVDKAY GLFCEMLQRG ISPDDVTYNS IISGMCKVHA MDKAEEVLQQ MFDRGILPDV ATYNSLIHGY YSLGRCKEVD RIFKEMSRNG VQPDIVTYNI
301: QMDYLCKNGR CTEARKIFDS IVSLGQKPTV TTYSILLHGY ALERSFHEMH CLIDLMVGNG IAPDHFVYNI LISAYAKEEM IGEVMHIFKK MRQHGLNPDV
401: ANYGAVVNLL SKIGRMDDAM SQFNQMITEG LAPDIIIFTP LISGFCSCGK WEKVHELFSE MLDRGICPNT VFFNTIMDRL CKNGRVMEAQ DLFDLMVHMG
501: VKPDVCTYNK LTGGYLFIGK MDEVSKLLDN MVSIGMEPDV ITYNILIDGY SKNGKINDAL VFFREMLEGK VKPSVIIFNI MIGVLLKCGR KEEAKDLFDG
601: IWAKGLVPDV VTYSLMIQKL IEEGSLQESN DLFLSMEKNG CAADSRMLNA IVRSLLQKGE VPRAGTYLSK IDERRFTLEA STASLLTALV SGGKGQEYKE
701: LLPEKYHSFL EQGTD

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.