Factsheet for TraesCS1D01G076500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G073700.1	Wheat	cytosol	56.63	97.66
TraesCS1D01G076700.1	Wheat	cytosol	39.76	79.04
TraesCS1D01G057700.1	Wheat	cytosol	34.49	70.46
TraesCS1B01G092500.1	Wheat	mitochondrion	82.23	69.73
TraesCS1D01G068700.1	Wheat	cytosol	45.93	69.48
TraesCS1D01G067600.1	Wheat	cytosol	38.1	69.32
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	71.69	68.29
TraesCS1D01G058400.1	Wheat	cytosol	52.71	67.96
TraesCS1D01G055300.1	Wheat	cytosol	63.1	67.8
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	67.02	66.12
TraesCS1D01G058000.1	Wheat	cytosol	40.06	65.52
TraesCS1D01G056700.1	Wheat	cytosol	58.28	63.76
TraesCS1D01G076400.1	Wheat	cytosol	34.19	62.53
TraesCS1A01G073800.1	Wheat	mitochondrion	30.57	60.96
TraesCS1D01G058500.1	Wheat	plastid	51.05	59.47
TraesCS1D01G033000.1	Wheat	cytosol	35.99	59.16
TraesCS1D01G068900.1	Wheat	mitochondrion	70.63	57.69
TraesCS1D01G068500.1	Wheat	mitochondrion	70.18	57.39
TraesCS1D01G068400.1	Wheat	mitochondrion	70.78	57.11
TraesCS1D01G056200.1	Wheat	mitochondrion	70.33	56.61
TraesCS2D01G532200.1	Wheat	cytosol	24.7	55.97
TraesCS1D01G068800.1	Wheat	plastid	68.52	55.76
TraesCS1D01G076900.1	Wheat	plastid	54.82	55.4
TraesCS2D01G532400.1	Wheat	cytosol	50.15	54.5
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	53.77	54.17
TraesCS6D01G290900.1	Wheat	mitochondrion	59.64	54.02
TraesCS2D01G532500.1	Wheat	plastid	53.46	52.21
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	59.94	50.57
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	60.09	50.38
TraesCS1D01G069100.1	Wheat	mitochondrion	48.64	50.23
TraesCS2D01G532100.1	Wheat	mitochondrion	51.96	49.86
KXG35774	Sorghum	cytosol, mitochondrion	34.04	47.78
Zm00001d007555_P001	Maize	plastid	58.28	47.54
Zm00001d007531_P001	Maize	plastid	57.38	46.81
Zm00001d007548_P001	Maize	plastid	57.38	46.81
Zm00001d007559_P001	Maize	plastid	57.38	46.63
TraesCS6D01G017800.1	Wheat	cytosol	37.5	46.37
Zm00001d007534_P001	Maize	plastid	54.07	46.2
KXG28799	Sorghum	plastid	52.41	45.79
TraesCS2D01G532300.1	Wheat	plastid	53.31	45.5
TraesCS2D01G532600.1	Wheat	plastid	53.16	45.49
TraesCS6D01G083300.1	Wheat	mitochondrion	29.52	43.95
TraesCS6D01G017700.1	Wheat	plastid	35.24	43.82
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.49	42.04
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	44.43	41.26
TraesCS6D01G083400.1	Wheat	mitochondrion	29.67	39.96
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	13.7	39.91
TraesCS7D01G231400.1	Wheat	cytosol, plastid	24.1	39.7
TraesCS1D01G057800.1	Wheat	mitochondrion	21.54	39.39
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	19.88	38.6
Os04t0351333-00	Rice	cytosol	50.9	38.45
TraesCS6D01G083100.1	Wheat	cytosol	28.16	38.16
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	27.41	37.84
TraesCS6D01G047700.1	Wheat	mitochondrion	36.9	35.46
TraesCS1D01G068600.1	Wheat	plastid	17.32	33.82
TraesCS6D01G076500.1	Wheat	plastid	22.74	33.33
KRH39054	Soybean	cytosol	20.18	26.96
Solyc06g007810.1.1	Tomato	cytosol	10.84	26.87
Solyc06g005220.2.1	Tomato	cytosol	16.42	26.85
KRH39004	Soybean	cytosol	20.03	26.76
TraesCS1D01G056600.1	Wheat	mitochondrion	8.13	26.73
KRH39072	Soybean	cytosol	19.88	26.61
KRH39057	Soybean	cytosol	19.88	26.56
KRH39112	Soybean	cytosol	19.73	26.36
KRH39074	Soybean	cytosol	19.58	26.16
Os04t0349600-01	Rice	plastid	15.21	26.1
Solyc06g007280.2.1	Tomato	cytosol	9.94	25.88
VIT_14s0081g00110.t01	Wine grape	cytosol	19.13	25.87
Bra006187.1-P	Field mustard	plastid	11.3	25.77
PGSC0003DMT400008759	Potato	cytosol	12.35	25.71
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.28	25.35
Bra027636.1-P	Field mustard	cytosol	12.35	25.31
CDX68679	Canola	cytosol	4.37	25.22
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.92	24.95
PGSC0003DMT400052977	Potato	cytosol	14.61	24.94
KRH08636	Soybean	cytosol	19.43	24.71
Bra026884.1-P	Field mustard	cytosol	16.87	24.4
KRH39066	Soybean	cytosol	20.03	23.96
PGSC0003DMT400008757	Potato	cytosol	17.92	23.9
AT1G63330.2	Thale cress	cytosol	19.88	23.61
KRH08671	Soybean	cytosol, mitochondrion	19.43	23.33
KRH17148	Soybean	mitochondrion	19.13	23.3
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.32	23.23
Bra026882.1-P	Field mustard	cytosol	18.67	23.22
KRH25652	Soybean	cytosol, golgi	18.67	22.96
KRH48615	Soybean	mitochondrion	18.67	22.75
PGSC0003DMT400025067	Potato	cytosol	16.27	22.69
KRH08639	Soybean	mitochondrion, plastid	19.28	22.65
KRH08628	Soybean	plastid	18.83	22.64
VIT_14s0081g00120.t01	Wine grape	plastid	19.73	22.47
KRH40400	Soybean	plastid	19.43	22.36
KRH09154	Soybean	mitochondrion	18.52	22.12
KRH08607	Soybean	cytosol	18.67	22.1
PGSC0003DMT400025074	Potato	cytosol	18.37	22.1
KRH31646	Soybean	cytosol	17.17	22.01
AT1G62930.1	Thale cress	plastid	20.78	21.94
KRH08277	Soybean	plastid	18.67	21.87
Solyc06g007740.1.1	Tomato	cytosol	19.43	21.86
KRH08625	Soybean	plastid	18.83	21.7
KRH40513	Soybean	plastid	11.45	21.65
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.78	21.6
AT1G62670.1	Thale cress	mitochondrion	20.48	21.59
PGSC0003DMT400053185	Potato	mitochondrion	19.13	21.53
AT1G63070.1	Thale cress	mitochondrion	18.98	21.36
AT1G63080.3	Thale cress	mitochondrion	19.73	21.34
KRH09084	Soybean	plastid	16.42	21.33
KRH09082	Soybean	cytosol	13.1	21.32
Bra026971.1-P	Field mustard	mitochondrion	20.18	21.3
AT1G63130.1	Thale cress	mitochondrion	20.18	21.27
Bra021192.1-P	Field mustard	plastid	16.11	21.23
Bra036649.1-P	Field mustard	cytosol	12.5	21.23
VIT_14s0081g00270.t01	Wine grape	plastid	18.52	21.21
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.66	21.18
AT5G16640.1	Thale cress	mitochondrion	15.96	21.03
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.17	20.99
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.57	20.95
PGSC0003DMT400053182	Potato	cytosol	18.83	20.87
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.43	20.84
AT1G62590.1	Thale cress	mitochondrion	19.88	20.82
AT1G63400.1	Thale cress	cytosol, plastid	18.07	20.8
AT1G62910.1	Thale cress	mitochondrion	19.73	20.73
KRH41817	Soybean	mitochondrion	17.32	20.72
Bra031731.1-P	Field mustard	mitochondrion	15.81	20.67
AT1G63150.1	Thale cress	mitochondrion	19.58	20.67
Bra028267.1-P	Field mustard	mitochondrion	19.43	20.61
Bra027029.1-P	Field mustard	mitochondrion	7.53	20.58
AT3G16710.1	Thale cress	mitochondrion	15.66	20.51
VIT_14s0030g02280.t01	Wine grape	plastid	17.32	20.5
KRH39050	Soybean	mitochondrion	16.42	20.49
Bra026958.1-P	Field mustard	mitochondrion	19.58	20.41
AT1G12300.1	Thale cress	mitochondrion	19.43	20.25
PGSC0003DMT400056663	Potato	plastid	17.92	20.24
AT1G12700.2	Thale cress	cytosol	18.83	20.23
PGSC0003DMT400056665	Potato	mitochondrion	17.92	20.2
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.83	20.13
Solyc06g007300.1.1	Tomato	extracellular	17.92	20.1
VIT_14s0030g02260.t01	Wine grape	cytosol	13.4	20.09
KRH09121	Soybean	mitochondrion	16.11	20.04
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.13	19.72
Bra036651.1-P	Field mustard	mitochondrion	15.81	19.63
Bra026957.1-P	Field mustard	mitochondrion	17.77	19.57
AT1G62914.1	Thale cress	mitochondrion	15.51	19.51
PGSC0003DMT400008760	Potato	mitochondrion	17.17	19.45
Bra016762.1-P	Field mustard	mitochondrion	17.77	19.44
PGSC0003DMT400052971	Potato	mitochondrion	17.32	19.39
Bra026954.1-P	Field mustard	mitochondrion	18.98	19.38
AT1G62680.2	Thale cress	plastid	15.96	19.34
KRH08599	Soybean	cytosol, plastid	19.43	19.28
AT5G41170.1	Thale cress	mitochondrion	15.21	19.17
Bra027026.1-P	Field mustard	mitochondrion	15.06	19.12
Solyc04g080120.1.1	Tomato	extracellular	17.62	19.12
AT1G06580.1	Thale cress	mitochondrion	14.16	18.8
PGSC0003DMT400053556	Potato	mitochondrion	12.95	18.74
KRH09097	Soybean	plastid	16.42	18.7
PGSC0003DMT400015293	Potato	mitochondrion	17.17	18.69
PGSC0003DMT400015298	Potato	mitochondrion	17.17	18.69
KRH09095	Soybean	plastid	16.42	18.63
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.25	18.45
AT1G64580.1	Thale cress	mitochondrion	14.46	18.36
AT1G62720.1	Thale cress	mitochondrion	12.8	17.53
Bra026401.1-P	Field mustard	plastid	14.01	17.38
AT1G64100.2	Thale cress	cytosol	20.93	17.25
AT1G64583.1	Thale cress	mitochondrion	13.25	17.19
KRH12873	Soybean	cytosol	17.77	16.95
Bra027656.1-P	Field mustard	cytosol	23.19	16.37
Bra027726.1-P	Field mustard	mitochondrion	11.45	16.14
AT4G26800.2	Thale cress	mitochondrion, plastid	12.35	15.95
KRH09085	Soybean	mitochondrion	16.27	15.34
KRH39064	Soybean	cytosol	21.08	14.45
Bra016758.1-P	Field mustard	plastid	18.52	10.61

Protein Annotations

EnsemblPlants:TraesCS1D01G076500.1	EnsemblPlantsGene:TraesCS1D01G076500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:58626322..58628316

Molecular Weight (calculated)

73308.9 Da

IEP (calculated)

7.847

GRAVY (calculated)

0.090

Length

664 amino acids

Sequence
(BLAST)

001: MDSCCRACRP NLGLAFFGRF LRTGLKADQI VASNLLKCLC HAKRTDEAVN MLLHRMSEFG CVPNVISYSI VLKSLCDDSR SQQALDLLQM VRKEGGACSF
101: NVVAYSTVIH GFFKEGEVSK ACDLFHEMMQ QGIVPNVVTY SSIIDALCKV RAMDKAKLVL QQMVDNGVRP NMYTWNSFMY SLCKNGRSKE AAEFFDSMTS
201: KGLKPNIIVY STLLHGYATE GCLADMINLF NSMEGNGIVA DCNVFNILID AYAKCGMMHE AMLIFTKMRE QGVSPNVCTY ATVIAALCRM GRLSDAMGKL
301: NKMIATGLQP DVAIYTSLIQ GFCTHGDLGK VKELVSEMMN KGMPRPNIVF FSSVINSLCK EGRVTDAHSI FDLAINIGER PDVITFTSLI DGYCLVGKMD
401: KAFKVLDAMV SAGIEPDVYT YTTLLDGYSR NGRIDDGLTL FSEMMHNKIK PTTATHGTLL NGLFRAGRTA SAKKMIHEMI ESGTTVSLSI YAIILEGLCR
501: NNCADEAITL FQKVRAMNIK LDVAILNTMI NAMFKVQRRE EANDLFASIS ASGLVPNAST YRTMITNLLK EGLVEEAENM LSSMEKSCCA PDSRLINDII
601: RILLEQGEVV KAGNYMSRVD GKSISLEAST TSLLIRLFSR EGKYREKIKL LPVKYPFFGG ATVE

Best Arabidopsis Sequence Match ( AT1G63330.3 )
(BLAST)

001: MVKSRPLPSI FEFNKLLSAI AKMKKFDLVI SLGEKMQRLG ISHNLYTYNI LINCFCRRSQ ISLALALLGK MMKLGYEPSI VTLSSLLNGY CHGKRISDAV
101: ALVDQMVEMG YRPDTITFTT LIHGLFLHNK ASEAVALVDR MVQRGCQPNL VTYGVVVNGL CKRGDIDLAF NLLNKMEAAK IEADVVIFNT IIDSLCKYRH
201: VDDALNLFKE METKGIRPNV VTYSSLISCL CSYGRWSDAS QLLSDMIEKK INPNLVTFNA LIDAFVKEGK FVEAEKLHDD MIKRSIDPDI FTYNSLINGF
301: CMHDRLDKAK QMFEFMVSKD CFPDLDTYNT LIKGFCKSKR VEDGTELFRE MSHRGLVGDT VTYTTLIQGL FHDGDCDNAQ KVFKQMVSDG VPPDIMTYSI
401: LLDGLCNNGK LEKALEVFDY MQKSEIKLDI YIYTTMIEGM CKAGKVDDGW DLFCSLSLKG VKPNVVTYNT MISGLCSKRL LQEAYALLKK MKEDGPLPDS
501: GTYNTLIRAH LRDGDKAASA ELIREMRSCR FVGDASTIGL VANMLHDGRL DKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63330 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8T7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.