Factsheet for TraesCS2D01G532100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	85.26	89.53
TraesCS2D01G532200.1	Wheat	cytosol	37.28	88.05
TraesCS2D01G532500.1	Wheat	plastid	85.84	87.35
TraesCS2D01G532400.1	Wheat	cytosol	76.88	87.07
TraesCS2A01G526200.1	Wheat	golgi	84.83	86.2
TraesCS2D01G532600.1	Wheat	plastid	88.01	78.48
TraesCS2D01G532300.1	Wheat	plastid	85.69	76.22
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	39.74	62.64
TraesCS1D01G058400.1	Wheat	cytosol	42.49	57.09
TraesCS1D01G057700.1	Wheat	cytosol	25.87	55.08
TraesCS1D01G076700.1	Wheat	cytosol	26.45	54.79
TraesCS1D01G068700.1	Wheat	cytosol	34.39	54.21
TraesCS1D01G055300.1	Wheat	cytosol	47.4	53.07
TraesCS1D01G033000.1	Wheat	cytosol	30.92	52.97
TraesCS1D01G056700.1	Wheat	cytosol	46.24	52.72
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	53.03	52.65
TraesCS1D01G076500.1	Wheat	mitochondrion	49.86	51.96
TraesCS1D01G067600.1	Wheat	cytosol	26.59	50.41
TraesCS1D01G058000.1	Wheat	cytosol	29.48	50.25
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	48.55	49.93
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	54.91	48.28
TraesCS6D01G017800.1	Wheat	cytosol	37.14	47.86
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	54.48	47.6
TraesCS1D01G068500.1	Wheat	mitochondrion	55.64	47.41
TraesCS1D01G076400.1	Wheat	cytosol	24.71	47.11
TraesCS1D01G068900.1	Wheat	mitochondrion	54.91	46.74
TraesCS1D01G056200.1	Wheat	mitochondrion	55.2	46.3
TraesCS1D01G068800.1	Wheat	plastid	54.34	46.08
TraesCS1D01G068400.1	Wheat	mitochondrion	54.48	45.81
TraesCS6D01G017700.1	Wheat	plastid	35.26	45.69
TraesCS1D01G058500.1	Wheat	plastid	36.71	44.56
TraesCS6D01G290900.1	Wheat	mitochondrion	45.66	43.11
TraesCS6D01G083300.1	Wheat	mitochondrion	27.75	43.05
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	43.06	41.68
TraesCS1D01G069100.1	Wheat	mitochondrion	38.29	41.21
TraesCS6D01G083400.1	Wheat	mitochondrion	28.76	40.37
TraesCS6D01G083100.1	Wheat	cytosol	27.6	38.98
TraesCS1D01G076900.1	Wheat	plastid	36.42	38.36
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	25.43	36.59
TraesCS7D01G231400.1	Wheat	cytosol, plastid	21.24	36.48
TraesCS1D01G068600.1	Wheat	plastid	17.92	36.47
TraesCS6D01G047700.1	Wheat	mitochondrion	34.25	34.3
TraesCS1D01G057800.1	Wheat	mitochondrion	17.34	33.06
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	16.04	32.46
TraesCS6D01G076500.1	Wheat	plastid	21.1	32.23
PGSC0003DMT400052977	Potato	cytosol	16.33	29.05
Solyc06g007280.2.1	Tomato	cytosol	10.55	28.63
Bra027636.1-P	Field mustard	cytosol	13.29	28.4
VIT_14s0081g00110.t01	Wine grape	cytosol	19.8	27.9
Solyc06g005220.2.1	Tomato	cytosol	16.33	27.83
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.08	27.67
KRH40513	Soybean	plastid	14.02	27.64
KRH39054	Soybean	cytosol	19.8	27.57
KRH39057	Soybean	cytosol	19.36	26.96
CDX68679	Canola	cytosol	4.48	26.96
KRH39004	Soybean	cytosol	19.22	26.76
KRH09082	Soybean	cytosol	15.75	26.72
KRH39074	Soybean	cytosol	19.08	26.56
KRH39112	Soybean	cytosol	19.08	26.56
Solyc06g007810.1.1	Tomato	cytosol	10.26	26.49
Bra006187.1-P	Field mustard	plastid	11.13	26.46
Bra036649.1-P	Field mustard	cytosol	14.88	26.34
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.08	26.14
KRH09084	Soybean	plastid	19.22	26.03
Bra027029.1-P	Field mustard	mitochondrion	9.1	25.93
KRH39072	Soybean	cytosol	18.35	25.6
PGSC0003DMT400008759	Potato	cytosol	11.71	25.39
VIT_14s0081g00120.t01	Wine grape	plastid	21.39	25.39
KRH08628	Soybean	plastid	20.23	25.36
VIT_14s0081g00270.t01	Wine grape	plastid	21.24	25.34
KRH17148	Soybean	mitochondrion	19.94	25.32
KRH08636	Soybean	cytosol	19.08	25.29
KRH39050	Soybean	mitochondrion	19.36	25.19
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.08	25.14
KRH08607	Soybean	cytosol	20.38	25.13
PGSC0003DMT400025067	Potato	cytosol	17.05	24.79
KRH08671	Soybean	cytosol, mitochondrion	19.8	24.77
KRH08277	Soybean	plastid	20.23	24.69
KRH39066	Soybean	cytosol	19.8	24.68
KRH31646	Soybean	cytosol	18.35	24.52
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.49	24.44
Bra026884.1-P	Field mustard	cytosol	16.18	24.4
KRH09121	Soybean	mitochondrion	18.79	24.34
KRH08639	Soybean	mitochondrion, plastid	19.8	24.25
KRH25652	Soybean	cytosol, golgi	18.79	24.07
KRH48615	Soybean	mitochondrion	18.93	24.04
KRH08625	Soybean	plastid	19.94	23.96
KRH09154	Soybean	mitochondrion	19.22	23.92
AT5G16640.1	Thale cress	mitochondrion	17.34	23.81
KRH41817	Soybean	mitochondrion	18.93	23.6
Bra026882.1-P	Field mustard	cytosol	18.21	23.6
KRH40400	Soybean	plastid	19.65	23.57
PGSC0003DMT400025074	Potato	cytosol	18.79	23.55
PGSC0003DMT400008757	Potato	cytosol	16.76	23.29
AT1G63330.2	Thale cress	cytosol	18.79	23.26
Bra031731.1-P	Field mustard	mitochondrion	16.91	23.03
Bra036651.1-P	Field mustard	mitochondrion	17.77	22.99
PGSC0003DMT400053185	Potato	mitochondrion	19.51	22.88
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.1	22.85
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.92	22.84
TraesCS1D01G056600.1	Wheat	mitochondrion	6.65	22.77
PGSC0003DMT400052971	Potato	mitochondrion	19.51	22.77
VIT_14s0030g02280.t01	Wine grape	plastid	18.35	22.64
Solyc06g007300.1.1	Tomato	extracellular	19.22	22.47
AT1G62680.2	Thale cress	plastid	17.77	22.45
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.46	22.43
Solyc06g007740.1.1	Tomato	cytosol	19.08	22.37
Bra027026.1-P	Field mustard	mitochondrion	16.91	22.37
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	7.37	22.37
AT3G16710.1	Thale cress	mitochondrion	16.33	22.29
AT1G62720.1	Thale cress	mitochondrion	15.61	22.27
AT1G62930.1	Thale cress	plastid	20.23	22.26
Bra026971.1-P	Field mustard	mitochondrion	20.23	22.26
KRH09095	Soybean	plastid	18.79	22.22
AT1G64583.1	Thale cress	mitochondrion	16.33	22.07
AT1G62670.1	Thale cress	mitochondrion	20.09	22.06
Solyc04g080120.1.1	Tomato	extracellular	19.51	22.06
AT1G06580.1	Thale cress	mitochondrion	15.9	22.0
PGSC0003DMT400015293	Potato	mitochondrion	19.36	21.97
PGSC0003DMT400015298	Potato	mitochondrion	19.36	21.97
AT1G63130.1	Thale cress	mitochondrion	19.94	21.9
AT1G64580.1	Thale cress	mitochondrion	16.47	21.8
AT1G63400.1	Thale cress	cytosol, plastid	18.06	21.66
KRH09097	Soybean	plastid	18.21	21.61
PGSC0003DMT400053556	Potato	mitochondrion	14.31	21.57
AT1G63070.1	Thale cress	mitochondrion	18.35	21.53
AT1G63080.3	Thale cress	mitochondrion	19.08	21.5
AT1G63150.1	Thale cress	mitochondrion	19.51	21.46
Bra021192.1-P	Field mustard	plastid	15.61	21.43
AT1G62910.1	Thale cress	mitochondrion	19.51	21.36
PGSC0003DMT400056665	Potato	mitochondrion	18.06	21.22
AT1G12300.1	Thale cress	mitochondrion	19.36	21.04
VIT_14s0030g02260.t01	Wine grape	cytosol	13.44	20.99
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.64	20.84
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.64	20.77
Bra028267.1-P	Field mustard	mitochondrion	18.64	20.61
PGSC0003DMT400056663	Potato	plastid	17.49	20.58
Bra026958.1-P	Field mustard	mitochondrion	18.93	20.57
AT1G62590.1	Thale cress	mitochondrion	18.79	20.5
PGSC0003DMT400008760	Potato	mitochondrion	17.34	20.48
AT5G41170.1	Thale cress	mitochondrion	15.46	20.3
AT1G62914.1	Thale cress	mitochondrion	15.46	20.27
Bra016762.1-P	Field mustard	mitochondrion	17.77	20.26
PGSC0003DMT400053182	Potato	cytosol	17.49	20.2
AT1G12700.2	Thale cress	cytosol	17.92	20.06
KRH08599	Soybean	cytosol, plastid	19.22	19.88
Bra026954.1-P	Field mustard	mitochondrion	18.64	19.85
AT4G26800.2	Thale cress	mitochondrion, plastid	14.74	19.84
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.87	19.55
Bra026401.1-P	Field mustard	plastid	15.03	19.44
Bra026957.1-P	Field mustard	mitochondrion	16.91	19.4
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.77	19.1
Bra027726.1-P	Field mustard	mitochondrion	12.28	18.05
KRH09085	Soybean	mitochondrion	18.35	18.04
AT1G64100.2	Thale cress	cytosol	20.66	17.74
KRH12873	Soybean	cytosol	16.62	16.52
Bra027656.1-P	Field mustard	cytosol	21.68	15.94
KRH39064	Soybean	cytosol	20.38	14.55
Bra016758.1-P	Field mustard	plastid	17.92	10.7

Protein Annotations

EnsemblPlants:TraesCS2D01G532100.1	EnsemblPlantsGene:TraesCS2D01G532100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:617538824..617541142

Molecular Weight (calculated)

76157.8 Da

IEP (calculated)

8.713

GRAVY (calculated)

0.101

Length

692 amino acids

Sequence
(BLAST)

001: MPTAPRRLGC RHGARPRRNA KSAGCAPPVR RIAEPSRDSP SRPDLVVAFF GRLLRLGLRL NVISLSNLLK GLCQAKRTNE AVDLLLHRTP ELDCVPDVFS
101: YSIVINGCLK EGEVDKACNL FHEMPQLGVQ PDVVTYTSII DALSKSGAMV KAEVVLRRMV GQGIGPNVMT YTSLIHGYSA SGQWKAAVRV FKEMVSVGVL
201: PNAVTLNSFM DSLCKHRRTK EARVIFDSMA AKGQKPDIVS YSIMLNGYVK EGCFDDMTGL FNSMLQNGVV PNHHIFNILI NAYAKRGLMD EAMHMFEVMR
301: QQGVNPDVFG YQIIMDSFCK MGRMDAALDK FNQMVNQGVS PNKAVYQCLV LGSCSHGDFV KAKELICEAV NRGLCSNSVF FYPVINDLCK EGKVKEAQDM
401: FDFILGIGQR PDVIMYNSLM DGYCLVGKVE EALRVLDAMK SAGLQPTAVT YAILLNGYCK IGKIADGLSL FREMSLSGVK PTTIMYNIIL DGLFRSGRTV
501: SAKEKFNTMV ESGLPVDVRT YNIVLHGLCR NNCTGEAIEL FKKLCATNVK INVITFNTMI SAMFKTRRIG EAKDLFATIS AIGLVPSVVT YSVMMTNFIK
601: EGLLAEADDM FLAMEKAGCA PNSRLLNHVV RALLEKGAVV KAATYLAKLD AKQLSVEAST ISLIVSLFSG EGKLREHVEL LPVKYQPPEM LD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.