Factsheet for TraesCS1D01G032300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G031700.1	Wheat	plastid	80.43	85.96
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	83.59	84.12
TraesCS1D01G033000.1	Wheat	cytosol	42.05	82.43
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	71.72	81.26
HORVU1Hr1G004750.6	Barley	plastid	81.57	80.95
TraesCS1D01G058400.1	Wheat	cytosol	40.03	61.55
TraesCS1D01G068700.1	Wheat	cytosol	33.84	61.05
TraesCS1D01G076500.1	Wheat	mitochondrion	50.38	60.09
TraesCS1D01G056700.1	Wheat	cytosol	45.96	59.97
TraesCS1D01G055300.1	Wheat	cytosol	46.46	59.55
TraesCS1D01G068400.1	Wheat	mitochondrion	61.62	59.3
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	51.64	58.68
TraesCS1D01G067600.1	Wheat	cytosol	27.02	58.63
TraesCS1D01G068500.1	Wheat	mitochondrion	59.97	58.5
TraesCS1D01G068900.1	Wheat	mitochondrion	59.72	58.18
TraesCS1D01G058000.1	Wheat	cytosol	29.67	57.88
TraesCS1D01G056200.1	Wheat	mitochondrion	60.1	57.7
TraesCS1D01G068800.1	Wheat	plastid	59.34	57.6
Zm00001d007534_P001	Maize	plastid	56.31	57.4
KXG28799	Sorghum	plastid	55.05	57.37
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	47.47	57.06
TraesCS2D01G532600.1	Wheat	plastid	55.68	56.83
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	48.11	56.61
TraesCS1D01G076700.1	Wheat	cytosol	23.86	56.59
TraesCS1D01G068600.1	Wheat	plastid	24.24	56.47
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	24.37	56.43
TraesCS1D01G058500.1	Wheat	plastid	40.53	56.32
TraesCS1D01G057800.1	Wheat	mitochondrion	25.76	56.2
TraesCS6D01G290900.1	Wheat	mitochondrion	51.89	56.07
TraesCS1D01G076400.1	Wheat	cytosol	25.63	55.92
TraesCS2D01G532400.1	Wheat	cytosol	43.06	55.81
TraesCS2D01G532200.1	Wheat	cytosol	20.58	55.63
TraesCS2D01G532500.1	Wheat	plastid	47.35	55.15
TraesCS1D01G057700.1	Wheat	cytosol	22.6	55.08
TraesCS2D01G532300.1	Wheat	plastid	53.91	54.88
Zm00001d007531_P001	Maize	plastid	56.19	54.67
Zm00001d007548_P001	Maize	plastid	56.19	54.67
Zm00001d007555_P001	Maize	plastid	56.19	54.67
TraesCS2D01G532100.1	Wheat	mitochondrion	47.6	54.48
Zm00001d007559_P001	Maize	plastid	56.19	54.47
KXG35774	Sorghum	cytosol, mitochondrion	31.94	53.49
TraesCS1D01G056600.1	Wheat	mitochondrion	13.64	53.47
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	15.28	53.07
TraesCS1D01G069100.1	Wheat	mitochondrion	42.68	52.57
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	50.0	51.7
TraesCS6D01G083100.1	Wheat	cytosol	31.44	50.82
TraesCS1D01G076900.1	Wheat	plastid	41.92	50.53
TraesCS6D01G083300.1	Wheat	mitochondrion	28.28	50.22
TraesCS6D01G083400.1	Wheat	mitochondrion	30.81	49.49
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	30.05	49.48
TraesCS6D01G017700.1	Wheat	plastid	32.32	47.94
TraesCS6D01G017800.1	Wheat	cytosol	32.32	47.67
TraesCS7D01G231400.1	Wheat	cytosol, plastid	23.99	47.15
Os04t0349600-01	Rice	plastid	22.47	45.99
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	41.04	45.45
Os04t0351333-00	Rice	cytosol	48.86	44.03
TraesCS6D01G076500.1	Wheat	plastid	22.22	38.85
TraesCS6D01G047700.1	Wheat	mitochondrion	33.08	37.92
Solyc06g007280.2.1	Tomato	cytosol	10.73	33.33
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.7	32.7
KRH39004	Soybean	cytosol	20.33	32.39
KRH39054	Soybean	cytosol	20.2	32.19
KRH39072	Soybean	cytosol	20.08	32.06
KRH39057	Soybean	cytosol	20.08	31.99
KRH39074	Soybean	cytosol	19.95	31.79
KRH39112	Soybean	cytosol	19.95	31.79
VIT_14s0081g00110.t01	Wine grape	cytosol	19.44	31.36
KRH48615	Soybean	mitochondrion	21.46	31.19
PGSC0003DMT400052977	Potato	cytosol	14.9	30.33
Solyc06g005220.2.1	Tomato	cytosol	15.53	30.3
KRH09084	Soybean	plastid	19.32	29.94
VIT_14s0081g00120.t01	Wine grape	plastid	21.97	29.85
Bra036649.1-P	Field mustard	cytosol	14.65	29.67
Bra027636.1-P	Field mustard	cytosol	12.12	29.63
VIT_14s0081g00270.t01	Wine grape	plastid	21.59	29.48
KRH39066	Soybean	cytosol	20.58	29.37
AT5G16640.1	Thale cress	mitochondrion	18.69	29.37
KRH40513	Soybean	plastid	13.01	29.34
KRH09154	Soybean	mitochondrion	20.33	28.96
KRH08636	Soybean	cytosol	19.07	28.93
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.43	28.91
KRH17148	Soybean	mitochondrion	19.7	28.62
KRH08639	Soybean	mitochondrion, plastid	20.33	28.5
KRH41817	Soybean	mitochondrion	19.95	28.47
Bra027029.1-P	Field mustard	mitochondrion	8.71	28.4
KRH08671	Soybean	cytosol, mitochondrion	19.82	28.39
Bra026884.1-P	Field mustard	cytosol	16.41	28.32
KRH08628	Soybean	plastid	19.7	28.26
PGSC0003DMT400008759	Potato	cytosol	11.36	28.21
KRH08277	Soybean	plastid	20.08	28.04
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.6	28.01
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.56	28.0
KRH31646	Soybean	cytosol	18.31	27.99
AT1G63330.2	Thale cress	cytosol	19.7	27.91
Bra006187.1-P	Field mustard	plastid	10.23	27.84
Bra021192.1-P	Field mustard	plastid	17.68	27.78
KRH40400	Soybean	plastid	20.2	27.73
Bra026882.1-P	Field mustard	cytosol	18.69	27.72
KRH08625	Soybean	plastid	20.08	27.6
PGSC0003DMT400008757	Potato	cytosol	17.3	27.51
AT3G16710.1	Thale cress	mitochondrion	17.55	27.42
KRH39050	Soybean	mitochondrion	18.31	27.26
Solyc06g007810.1.1	Tomato	cytosol	9.22	27.24
KRH09121	Soybean	mitochondrion	18.31	27.15
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.92	27.07
KRH25652	Soybean	cytosol, golgi	18.43	27.04
KRH09082	Soybean	cytosol	13.89	26.96
CDX68679	Canola	cytosol	3.91	26.96
PGSC0003DMT400025074	Potato	cytosol	18.69	26.81
AT1G06580.1	Thale cress	mitochondrion	16.92	26.8
AT1G64580.1	Thale cress	mitochondrion	17.68	26.77
KRH09097	Soybean	plastid	19.7	26.76
VIT_14s0030g02280.t01	Wine grape	plastid	18.94	26.74
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.96	26.73
Bra036651.1-P	Field mustard	mitochondrion	17.93	26.54
AT1G63150.1	Thale cress	mitochondrion	20.96	26.39
AT1G64583.1	Thale cress	mitochondrion	17.05	26.37
Bra026971.1-P	Field mustard	mitochondrion	20.83	26.23
AT1G63080.3	Thale cress	mitochondrion	20.33	26.22
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.78	26.21
KRH08607	Soybean	cytosol	18.56	26.2
Bra016762.1-P	Field mustard	mitochondrion	20.08	26.19
AT1G62670.1	Thale cress	mitochondrion	20.83	26.19
Bra031731.1-P	Field mustard	mitochondrion	16.79	26.18
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.45	26.17
AT1G62914.1	Thale cress	mitochondrion	17.42	26.14
Solyc06g007740.1.1	Tomato	cytosol	19.44	26.1
AT1G12700.2	Thale cress	cytosol	20.33	26.05
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.09	25.93
Bra028267.1-P	Field mustard	mitochondrion	20.45	25.88
AT1G63130.1	Thale cress	mitochondrion	20.58	25.87
KRH09095	Soybean	plastid	19.07	25.81
AT5G41170.1	Thale cress	mitochondrion	17.17	25.81
AT1G63070.1	Thale cress	mitochondrion	19.19	25.76
Solyc06g007300.1.1	Tomato	extracellular	19.19	25.68
PGSC0003DMT400025067	Potato	cytosol	15.4	25.63
PGSC0003DMT400053185	Potato	mitochondrion	19.07	25.59
AT1G12300.1	Thale cress	mitochondrion	20.58	25.59
AT1G62720.1	Thale cress	mitochondrion	15.66	25.57
PGSC0003DMT400053556	Potato	mitochondrion	14.77	25.49
PGSC0003DMT400056665	Potato	mitochondrion	18.94	25.47
AT1G62930.1	Thale cress	plastid	20.2	25.44
Bra027026.1-P	Field mustard	mitochondrion	16.79	25.43
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.42	25.41
AT1G62680.2	Thale cress	plastid	17.55	25.36
PGSC0003DMT400056663	Potato	plastid	18.81	25.34
PGSC0003DMT400052971	Potato	mitochondrion	18.94	25.3
Bra026958.1-P	Field mustard	mitochondrion	20.33	25.27
AT1G63400.1	Thale cress	cytosol, plastid	18.31	25.13
AT1G62910.1	Thale cress	mitochondrion	19.95	25.0
Solyc04g080120.1.1	Tomato	extracellular	19.32	25.0
AT1G62590.1	Thale cress	mitochondrion	19.95	24.92
PGSC0003DMT400008760	Potato	mitochondrion	18.43	24.91
Bra027726.1-P	Field mustard	mitochondrion	14.77	24.84
Bra026954.1-P	Field mustard	mitochondrion	20.2	24.62
PGSC0003DMT400015293	Potato	mitochondrion	18.94	24.59
PGSC0003DMT400015298	Potato	mitochondrion	18.94	24.59
Bra026957.1-P	Field mustard	mitochondrion	18.69	24.54
AT4G26800.2	Thale cress	mitochondrion, plastid	15.91	24.51
VIT_14s0030g02260.t01	Wine grape	cytosol	13.64	24.38
PGSC0003DMT400053182	Potato	cytosol	18.43	24.37
Bra026401.1-P	Field mustard	plastid	16.16	23.93
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.77	23.83
KRH08599	Soybean	cytosol, plastid	19.7	23.32
KRH09085	Soybean	mitochondrion	19.32	21.73
AT1G64100.2	Thale cress	cytosol	21.97	21.59
KRH12873	Soybean	cytosol	17.17	19.54
Bra027656.1-P	Field mustard	cytosol	23.11	19.45
KRH39064	Soybean	cytosol	22.22	18.16
Bra016758.1-P	Field mustard	plastid	20.08	13.72

Protein Annotations

EnsemblPlants:TraesCS1D01G032300.1	EnsemblPlantsGene:TraesCS1D01G032300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1D:-:12549602..12551980

Molecular Weight (calculated)

88109.1 Da

IEP (calculated)

8.774

GRAVY (calculated)

0.044

Length

792 amino acids

Sequence
(BLAST)

001: MPRFSSTTPM SPPRLLLRLR ARHSSSISHP SRIWDPHAAF AAATQRARSG TLTTEDAHHL FDELLRQGNP VQERPLTNFL AALARAPASA SCSDGPALAV
101: ALFGRLSRGA GRHVVQPNVF TYGVLMDCCC RAHRLDLALA FFSRLLKTGL EADQVVFSTL LKGLCHTKRA DEALDVLLHR MTELGCTPNV VAYNTIIHGF
201: FKEGQVSKAC NLFHEMAQQG VKPNVVTYNS VIDALCKAKA MDKAEYFLCQ MVDNGAVPNN VTYNSLIHGY SSSGHSKEAV RVLKEMTSKG IIPDVFTCNS
301: LMASLCKNGR SKEAAEIFDS MSMKGLKPNT VSYAIRLHGY ATEGCLVDMI NLFNSMERDC ILPDCQIFNI LINAYAKSGK LDKAMLIFKK MQKQGVSPNA
401: VTYSTVIDAF CKKGRLDDAV IKFNQMIDTG VRPDMAVYRS LIQGFCTHGD LVKAKEYVTE MMKKGMLPPD IMFFSSIMQN LCTEGRVIEA RNILDLMVHI
501: GMRPDVPIFN LLIGGYCLVC KMKNATKMFD DMVSYGLEPS NITYGILING YCKNRRIDDG LILFKEMLRK GLKPTTFNYN VILDGLFLAG RTVAAKEKFN
601: EMVESGVSMC ISTYSIVLCG LCRNNCSGEA ITLFQKLSAM DVKFNIRIVN IMIDAFFRVQ RKQEAKDLFA AITANGLVAN VFTYSLMMTN LIKEGSVEEA
701: DTLFLSMEMS GCTSNSWMLN LIIRRLLEKG EIVKAGCYMS KVDAKSYSLE AKTVSFLISL FSGKGKYREH IRLLPKKYQF LEEAATVEWF AT

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.