Factsheet for TraesCS1D01G069100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G086000.1	Wheat	plastid	85.23	79.88
TraesCS1A01G067700.1	Wheat	extracellular	40.12	76.56
TraesCS1D01G068600.1	Wheat	plastid	37.33	70.59
TraesCS1D01G056600.1	Wheat	mitochondrion	21.15	67.33
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	22.55	63.6
HORVU1Hr1G014060.1	Barley	plastid	88.02	63.6
TraesCS1A01G067800.1	Wheat	cytosol	36.86	63.37
TraesCS1D01G068700.1	Wheat	cytosol	40.12	58.77
TraesCS1D01G068500.1	Wheat	mitochondrion	73.41	58.13
TraesCS1D01G068900.1	Wheat	mitochondrion	73.09	57.81
TraesCS1D01G068400.1	Wheat	mitochondrion	73.87	57.72
TraesCS1D01G068800.1	Wheat	plastid	72.47	57.11
TraesCS6D01G290900.1	Wheat	mitochondrion	64.85	56.89
TraesCS1D01G058000.1	Wheat	cytosol	35.77	56.65
TraesCS1D01G058400.1	Wheat	cytosol	44.63	55.73
TraesCS1D01G057800.1	Wheat	mitochondrion	30.48	53.99
TraesCS1D01G076700.1	Wheat	cytosol	27.53	52.99
TraesCS1D01G076900.1	Wheat	plastid	53.03	51.9
TraesCS1D01G056200.1	Wheat	mitochondrion	66.41	51.76
TraesCS1D01G058500.1	Wheat	plastid	45.88	51.75
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	54.43	50.22
TraesCS1D01G076500.1	Wheat	mitochondrion	50.23	48.64
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	25.82	48.54
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	50.39	48.14
TraesCS1D01G055300.1	Wheat	cytosol	43.08	44.82
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	32.97	44.07
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	53.34	43.58
TraesCS6D01G083300.1	Wheat	mitochondrion	29.86	43.05
TraesCS1D01G056700.1	Wheat	cytosol	40.59	43.0
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	52.57	42.68
TraesCS6D01G083400.1	Wheat	mitochondrion	32.5	42.39
TraesCS1D01G067600.1	Wheat	cytosol	23.95	42.19
TraesCS2D01G532600.1	Wheat	plastid	50.86	42.14
TraesCS2D01G532300.1	Wheat	plastid	50.86	42.03
KXG28799	Sorghum	plastid	49.61	41.97
TraesCS7D01G231400.1	Wheat	cytosol, plastid	26.13	41.69
Zm00001d007555_P001	Maize	plastid	52.57	41.52
Zm00001d007531_P001	Maize	plastid	52.41	41.4
Zm00001d007534_P001	Maize	plastid	49.92	41.31
Zm00001d007548_P001	Maize	plastid	52.26	41.28
Zm00001d007559_P001	Maize	plastid	52.41	41.25
TraesCS1D01G057700.1	Wheat	cytosol	20.68	40.92
TraesCS6D01G083100.1	Wheat	cytosol	30.95	40.61
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	41.37	40.36
TraesCS2D01G532500.1	Wheat	plastid	42.3	40.0
TraesCS1D01G033000.1	Wheat	cytosol	24.73	39.36
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	46.19	38.77
TraesCS2D01G532400.1	Wheat	cytosol	36.55	38.46
TraesCS2D01G532100.1	Wheat	mitochondrion	41.21	38.29
KXG35774	Sorghum	cytosol, mitochondrion	27.99	38.05
Os04t0349600-01	Rice	plastid	21.77	36.18
TraesCS6D01G017700.1	Wheat	plastid	29.08	35.02
TraesCS6D01G017800.1	Wheat	cytosol	28.77	34.45
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	37.95	34.13
TraesCS6D01G076500.1	Wheat	plastid	22.55	32.01
TraesCS6D01G047700.1	Wheat	mitochondrion	34.37	31.98
Os04t0351333-00	Rice	cytosol	43.23	31.63
TraesCS1D01G076400.1	Wheat	cytosol	17.42	30.85
TraesCS2D01G532200.1	Wheat	cytosol	13.37	29.35
Bra026882.1-P	Field mustard	cytosol	22.24	26.78
KRH39054	Soybean	cytosol	20.37	26.36
KRH39074	Soybean	cytosol	20.37	26.36
KRH40513	Soybean	plastid	14.31	26.21
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.44	26.21
Bra006187.1-P	Field mustard	plastid	11.82	26.12
PGSC0003DMT400008759	Potato	cytosol	12.91	26.02
KRH39004	Soybean	cytosol	20.06	25.96
VIT_14s0081g00110.t01	Wine grape	cytosol	19.75	25.87
Bra027636.1-P	Field mustard	cytosol	12.91	25.62
KRH39072	Soybean	cytosol	19.75	25.6
KRH39057	Soybean	cytosol	19.75	25.55
KRH39112	Soybean	cytosol	19.75	25.55
Bra027029.1-P	Field mustard	mitochondrion	9.64	25.51
Solyc06g007810.1.1	Tomato	cytosol	10.58	25.37
KRH08639	Soybean	mitochondrion, plastid	22.08	25.13
Solyc06g007280.2.1	Tomato	cytosol	9.95	25.1
KRH08636	Soybean	cytosol	20.37	25.1
KRH08628	Soybean	plastid	21.46	25.0
KRH17148	Soybean	mitochondrion	21.15	24.95
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.6	24.95
KRH09084	Soybean	plastid	19.6	24.66
KRH08625	Soybean	plastid	21.93	24.48
AT5G16640.1	Thale cress	mitochondrion	18.97	24.21
VIT_14s0081g00120.t01	Wine grape	plastid	21.93	24.19
KRH08277	Soybean	plastid	21.31	24.16
Bra036649.1-P	Field mustard	cytosol	14.62	24.04
VIT_14s0081g00270.t01	Wine grape	plastid	21.62	23.97
KRH41817	Soybean	mitochondrion	20.68	23.96
KRH08607	Soybean	cytosol	20.84	23.89
KRH08671	Soybean	cytosol, mitochondrion	20.53	23.87
KRH09082	Soybean	cytosol	15.09	23.77
PGSC0003DMT400052977	Potato	cytosol	14.31	23.65
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.26	23.27
KRH40400	Soybean	plastid	20.84	23.22
KRH48615	Soybean	mitochondrion	19.6	23.12
KRH39066	Soybean	cytosol	19.91	23.06
KRH09154	Soybean	mitochondrion	19.91	23.02
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.86	23.0
Solyc06g005220.2.1	Tomato	cytosol	14.46	22.91
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.66	22.86
Bra021192.1-P	Field mustard	plastid	17.88	22.82
KRH39050	Soybean	mitochondrion	18.82	22.74
KRH09121	Soybean	mitochondrion	18.82	22.66
KRH25652	Soybean	cytosol, golgi	18.97	22.59
AT1G63330.2	Thale cress	cytosol	19.6	22.54
KRH31646	Soybean	cytosol	18.04	22.39
Bra026958.1-P	Field mustard	mitochondrion	22.08	22.29
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.46	22.22
AT5G41170.1	Thale cress	mitochondrion	18.2	22.2
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.95	22.2
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.15	21.97
AT1G06580.1	Thale cress	mitochondrion	16.95	21.8
AT1G64580.1	Thale cress	mitochondrion	17.73	21.8
Bra026884.1-P	Field mustard	cytosol	15.55	21.79
VIT_14s0030g02280.t01	Wine grape	plastid	18.97	21.75
CDX68679	Canola	cytosol	3.89	21.74
KRH09095	Soybean	plastid	19.75	21.71
PGSC0003DMT400053185	Potato	mitochondrion	19.91	21.69
Solyc06g007740.1.1	Tomato	cytosol	19.91	21.69
Bra036651.1-P	Field mustard	mitochondrion	18.04	21.68
AT1G12300.1	Thale cress	mitochondrion	21.46	21.66
AT1G63400.1	Thale cress	cytosol, plastid	19.44	21.66
Bra026957.1-P	Field mustard	mitochondrion	20.22	21.56
AT1G63130.1	Thale cress	mitochondrion	21.0	21.43
Bra027026.1-P	Field mustard	mitochondrion	17.42	21.41
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.49	21.41
PGSC0003DMT400008757	Potato	cytosol	16.49	21.29
VIT_14s0030g02260.t01	Wine grape	cytosol	14.62	21.22
PGSC0003DMT400025067	Potato	cytosol	15.71	21.22
PGSC0003DMT400025074	Potato	cytosol	18.2	21.2
AT1G62930.1	Thale cress	plastid	20.68	21.14
Bra026971.1-P	Field mustard	mitochondrion	20.68	21.14
KRH09097	Soybean	plastid	19.13	21.1
Bra016762.1-P	Field mustard	mitochondrion	19.91	21.09
AT1G62720.1	Thale cress	mitochondrion	15.86	21.03
AT1G63080.3	Thale cress	mitochondrion	20.06	21.01
PGSC0003DMT400053556	Potato	mitochondrion	14.93	20.91
AT1G64583.1	Thale cress	mitochondrion	16.64	20.9
AT1G62914.1	Thale cress	mitochondrion	17.11	20.83
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.84	20.81
Bra027726.1-P	Field mustard	mitochondrion	15.24	20.81
AT1G62670.1	Thale cress	mitochondrion	20.37	20.79
Bra028267.1-P	Field mustard	mitochondrion	20.22	20.77
AT3G16710.1	Thale cress	mitochondrion	16.33	20.71
AT1G62590.1	Thale cress	mitochondrion	20.37	20.66
PGSC0003DMT400056665	Potato	mitochondrion	18.82	20.54
Bra026954.1-P	Field mustard	mitochondrion	20.68	20.46
PGSC0003DMT400056663	Potato	plastid	18.66	20.41
Solyc06g007300.1.1	Tomato	extracellular	18.66	20.27
AT1G12700.2	Thale cress	cytosol	19.44	20.23
AT1G63150.1	Thale cress	mitochondrion	19.75	20.19
AT1G62910.1	Thale cress	mitochondrion	19.75	20.09
AT1G63070.1	Thale cress	mitochondrion	18.35	20.0
PGSC0003DMT400008760	Potato	mitochondrion	18.2	19.97
Bra031731.1-P	Field mustard	mitochondrion	15.71	19.88
AT1G62680.2	Thale cress	plastid	16.8	19.71
Bra026401.1-P	Field mustard	plastid	16.33	19.63
PGSC0003DMT400053182	Potato	cytosol	18.2	19.53
Solyc04g080120.1.1	Tomato	extracellular	18.51	19.44
PGSC0003DMT400052971	Potato	mitochondrion	17.73	19.22
AT4G26800.2	Thale cress	mitochondrion, plastid	15.24	19.07
PGSC0003DMT400015293	Potato	mitochondrion	17.73	18.69
PGSC0003DMT400015298	Potato	mitochondrion	17.73	18.69
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.71	18.6
KRH08599	Soybean	cytosol, plastid	18.97	18.24
KRH09085	Soybean	mitochondrion	19.13	17.47
AT1G64100.2	Thale cress	cytosol	21.31	17.0
Bra027656.1-P	Field mustard	cytosol	22.39	15.3
KRH12873	Soybean	cytosol	15.71	14.51
KRH39064	Soybean	cytosol	21.62	14.34
Bra016758.1-P	Field mustard	plastid	20.68	11.48

Protein Annotations

EnsemblPlants:TraesCS1D01G069100.1	EnsemblPlantsGene:TraesCS1D01G069100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:50108545..50111952

Molecular Weight (calculated)

71069.9 Da

IEP (calculated)

8.209

GRAVY (calculated)

0.053

Length

643 amino acids

Sequence
(BLAST)

001: MSRVCLRRRL SSSSFSNCTS PPSPTWSPHA AFAAATERVR AGTLSPQDAH HLFDVLFQQA IRVPERSLDG FLAALSHATS SEACRDGPAL ALTLFNRVCR
101: EEAGMRVAPH TIFTYGILMN CCCRVRRPDL GLAFFGRILR AGLKTNQIAA NTVIKCLCCA KHTDEAVNML LHRMSDLGCV PDAFSYNTVL KSLCEDGRSL
201: QALDLLLQMV APPTWWLITR SSMASLRKMV DNGVRPDEVT YTSMIHGYST LGRLKEVRKM FREMTSCGLI PDVVTWNSFM DSLCKHGRTK EAAKVFFSMA
301: AKGNKPNIVS YTILLHGYAN EGSFADMMSL FNSMKGGGIV ANCKVFNILI GAYAKRGLID EAMLILTEMR GQGLSPDVVT YSTLISAHWR MGKLTDAMDK
401: FSQMVVGMGV QPDTVFYHSL VQFLCTHGDL VKAKELISEM MNKGIARPNT ALFSSIMDSL CNEGRVIDAH HIFDLVIDIG EKPDISMFST LIDGYCLVGE
501: MDKACGVLDA MVSAGIEPNV ITYSTLVSRY CKRGRIDDGL ILFRQMLHKK VKPTTVTYET ILNGLFRAGR TADAKKMFHE MIESGIMVER REEANDLFAA
601: LPASGLVPNA STYGVMVQNL LKEGAVEEAD RMYLTTIFQG RNL

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.