Factsheet for TraesCS1D01G057800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	43.25	68.86
TraesCS1D01G056600.1	Wheat	mitochondrion	38.02	68.32
TraesCS1D01G068600.1	Wheat	plastid	62.53	66.76
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	58.95	62.57
TraesCS1D01G058000.1	Wheat	cytosol	52.07	46.55
TraesCS7D01G231400.1	Wheat	cytosol, plastid	48.76	43.92
TraesCS6D01G083100.1	Wheat	cytosol	53.17	39.39
TraesCS6D01G083400.1	Wheat	mitochondrion	51.79	38.13
TraesCS6D01G083300.1	Wheat	mitochondrion	45.45	37.0
Os04t0349600-01	Rice	plastid	38.84	36.43
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	45.73	34.51
TraesCS6D01G290900.1	Wheat	mitochondrion	68.04	33.7
TraesCS1D01G056200.1	Wheat	mitochondrion	74.93	32.97
TraesCS1D01G068900.1	Wheat	mitochondrion	71.9	32.1
TraesCS1D01G058500.1	Wheat	plastid	49.59	31.58
TraesCS6D01G076500.1	Wheat	plastid	39.39	31.57
TraesCS1D01G076400.1	Wheat	cytosol	31.41	31.41
TraesCS1D01G068500.1	Wheat	mitochondrion	69.15	30.91
TraesCS1D01G068400.1	Wheat	mitochondrion	69.97	30.86
TraesCS1D01G069100.1	Wheat	mitochondrion	53.99	30.48
TraesCS1D01G068800.1	Wheat	plastid	68.32	30.39
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	56.75	28.73
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	53.99	28.12
TraesCS1D01G076900.1	Wheat	plastid	49.86	27.55
KXG28799	Sorghum	plastid	57.02	27.24
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	55.92	25.79
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	56.2	25.76
Zm00001d007531_P001	Maize	plastid	55.1	24.57
Zm00001d007548_P001	Maize	plastid	54.82	24.45
Zm00001d007559_P001	Maize	plastid	54.82	24.36
Zm00001d007555_P001	Maize	plastid	53.17	23.71
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	43.8	23.63
TraesCS2D01G532600.1	Wheat	plastid	49.86	23.32
TraesCS2D01G532300.1	Wheat	plastid	49.86	23.26
Zm00001d007534_P001	Maize	plastid	49.04	22.91
TraesCS1D01G076500.1	Wheat	mitochondrion	39.39	21.54
Solyc06g007280.2.1	Tomato	cytosol	14.88	21.18
TraesCS6D01G047700.1	Wheat	mitochondrion	38.02	19.97
TraesCS1D01G055300.1	Wheat	cytosol	33.88	19.9
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	41.87	19.84
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	37.74	19.16
TraesCS2D01G532400.1	Wheat	cytosol	31.13	18.49
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	32.23	17.75
TraesCS1D01G056700.1	Wheat	cytosol	29.48	17.63
TraesCS2D01G532100.1	Wheat	mitochondrion	33.06	17.34
TraesCS2D01G532500.1	Wheat	plastid	32.23	17.21
KRH40513	Soybean	plastid	15.7	16.24
TraesCS1D01G058400.1	Wheat	cytosol	22.04	15.53
AT1G62914.1	Thale cress	mitochondrion	22.31	15.34
KRH39050	Soybean	mitochondrion	22.31	15.23
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.83	15.09
KRH09084	Soybean	plastid	21.21	15.07
AT1G62670.1	Thale cress	mitochondrion	25.07	14.44
KRH17148	Soybean	mitochondrion	21.49	14.31
AT1G63400.1	Thale cress	cytosol, plastid	22.59	14.21
KRH40400	Soybean	plastid	22.59	14.21
KRH08639	Soybean	mitochondrion, plastid	22.04	14.16
KRH48615	Soybean	mitochondrion	21.21	14.13
KRH39072	Soybean	cytosol	19.28	14.11
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.39	14.1
VIT_14s0030g02280.t01	Wine grape	plastid	21.76	14.08
AT1G63070.1	Thale cress	mitochondrion	22.86	14.07
KRH08277	Soybean	plastid	21.76	13.93
KRH39074	Soybean	cytosol	19.01	13.88
KRH41817	Soybean	mitochondrion	21.21	13.87
KRH09154	Soybean	mitochondrion	21.21	13.85
Bra026971.1-P	Field mustard	mitochondrion	23.97	13.83
KRH08625	Soybean	plastid	21.76	13.72
AT5G16640.1	Thale cress	mitochondrion	19.01	13.69
KRH39004	Soybean	cytosol	18.73	13.68
KRH39054	Soybean	cytosol	18.73	13.68
KRH39057	Soybean	cytosol	18.73	13.68
KRH39112	Soybean	cytosol	18.73	13.68
AT1G63080.3	Thale cress	mitochondrion	23.14	13.68
Os04t0351333-00	Rice	cytosol	33.06	13.65
KRH08628	Soybean	plastid	20.66	13.59
Bra028267.1-P	Field mustard	mitochondrion	23.42	13.58
KRH08671	Soybean	cytosol, mitochondrion	20.66	13.56
Solyc06g007740.1.1	Tomato	cytosol	22.04	13.56
AT1G63130.1	Thale cress	mitochondrion	23.42	13.49
Bra016762.1-P	Field mustard	mitochondrion	22.31	13.34
KRH09121	Soybean	mitochondrion	19.56	13.3
PGSC0003DMT400056663	Potato	plastid	21.49	13.27
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.59	13.25
AT1G63330.2	Thale cress	cytosol	20.39	13.24
PGSC0003DMT400053185	Potato	mitochondrion	21.49	13.22
AT1G12775.1	Thale cress	cytosol, mitochondrion	23.42	13.2
AT1G12300.1	Thale cress	mitochondrion	23.14	13.19
Bra021192.1-P	Field mustard	plastid	18.18	13.1
PGSC0003DMT400056665	Potato	mitochondrion	21.21	13.07
TraesCS6D01G017800.1	Wheat	cytosol	19.28	13.04
Bra026958.1-P	Field mustard	mitochondrion	22.86	13.03
KRH08636	Soybean	cytosol	18.73	13.03
Solyc06g007300.1.1	Tomato	extracellular	21.21	13.01
AT1G06580.1	Thale cress	mitochondrion	17.91	13.0
AT1G62910.1	Thale cress	mitochondrion	22.59	12.97
KRH39066	Soybean	cytosol	19.83	12.97
AT1G62590.1	Thale cress	mitochondrion	22.59	12.93
Bra026954.1-P	Field mustard	mitochondrion	23.14	12.92
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.04	12.88
AT1G62930.1	Thale cress	plastid	22.31	12.88
KRH09097	Soybean	plastid	20.66	12.86
AT1G64580.1	Thale cress	mitochondrion	18.46	12.81
Bra036649.1-P	Field mustard	cytosol	13.77	12.79
VIT_14s0081g00270.t01	Wine grape	plastid	20.39	12.76
VIT_14s0081g00120.t01	Wine grape	plastid	20.39	12.69
KRH08607	Soybean	cytosol	19.56	12.66
KRH09095	Soybean	plastid	20.39	12.65
AT1G63150.1	Thale cress	mitochondrion	21.76	12.56
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.73	12.52
AT1G64583.1	Thale cress	mitochondrion	17.63	12.5
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.36	12.48
AT4G26800.2	Thale cress	mitochondrion, plastid	17.63	12.45
Bra036651.1-P	Field mustard	mitochondrion	18.18	12.34
PGSC0003DMT400052971	Potato	mitochondrion	20.11	12.31
KRH25652	Soybean	cytosol, golgi	18.18	12.22
VIT_14s0081g00110.t01	Wine grape	cytosol	16.53	12.22
Bra031731.1-P	Field mustard	mitochondrion	17.08	12.2
PGSC0003DMT400053556	Potato	mitochondrion	15.43	12.2
PGSC0003DMT400025074	Potato	cytosol	18.46	12.14
PGSC0003DMT400008760	Potato	mitochondrion	19.56	12.12
PGSC0003DMT400008757	Potato	cytosol	16.53	12.05
Bra027026.1-P	Field mustard	mitochondrion	17.08	11.85
AT3G16710.1	Thale cress	mitochondrion	16.53	11.83
KRH31646	Soybean	cytosol	16.8	11.78
PGSC0003DMT400053182	Potato	cytosol	19.28	11.69
AT1G12700.2	Thale cress	cytosol	19.83	11.65
Bra026957.1-P	Field mustard	mitochondrion	19.28	11.61
Bra026401.1-P	Field mustard	plastid	17.08	11.59
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.39	11.58
Solyc06g005220.2.1	Tomato	cytosol	12.95	11.58
AT1G62720.1	Thale cress	mitochondrion	15.43	11.55
Solyc04g080120.1.1	Tomato	extracellular	19.28	11.44
Bra026882.1-P	Field mustard	cytosol	16.8	11.42
PGSC0003DMT400025067	Potato	cytosol	14.88	11.34
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.43	11.31
AT5G41170.1	Thale cress	mitochondrion	15.98	11.01
KXG35774	Sorghum	cytosol, mitochondrion	14.33	10.99
PGSC0003DMT400015293	Potato	mitochondrion	18.46	10.98
PGSC0003DMT400015298	Potato	mitochondrion	18.46	10.98
Bra027636.1-P	Field mustard	cytosol	9.64	10.8
AT1G64100.2	Thale cress	cytosol	23.97	10.79
KRH09085	Soybean	mitochondrion	20.66	10.65
AT1G62680.2	Thale cress	plastid	15.98	10.58
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.77	10.48
Bra026884.1-P	Field mustard	cytosol	12.95	10.24
KRH08599	Soybean	cytosol, plastid	18.73	10.16
TraesCS6D01G017700.1	Wheat	plastid	14.88	10.11
Bra027726.1-P	Field mustard	mitochondrion	12.95	9.98
KRH09082	Soybean	cytosol	10.74	9.56
Bra027656.1-P	Field mustard	cytosol	23.42	9.03
PGSC0003DMT400052977	Potato	cytosol	9.37	8.74
KRH12873	Soybean	cytosol	16.53	8.62
KRH39064	Soybean	cytosol	21.21	7.95
Bra026836.1-P	Field mustard	cytosol, mitochondrion	10.74	7.94
Bra016758.1-P	Field mustard	plastid	22.31	6.99
Bra006187.1-P	Field mustard	plastid	4.68	5.84
Bra027029.1-P	Field mustard	mitochondrion	3.86	5.76
VIT_14s0030g02260.t01	Wine grape	cytosol	3.86	3.16
PGSC0003DMT400008759	Potato	cytosol	2.75	3.13
TraesCS1D01G057700.1	Wheat	cytosol	0.28	0.31
TraesCS1D01G076700.1	Wheat	cytosol	0.28	0.3
TraesCS1D01G067600.1	Wheat	cytosol	0.28	0.27
TraesCS1A01G056000.1	Wheat	cytosol	0.28	0.25
CDX68679	Canola	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0
TraesCS1D01G033000.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G068700.1	Wheat	cytosol	0.0	0.0
TraesCS2D01G532200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G057800.1	EnsemblPlantsGene:TraesCS1D01G057800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:37963745..37964836

Molecular Weight (calculated)

39783.4 Da

IEP (calculated)

9.184

GRAVY (calculated)

-0.063

Length

363 amino acids

Sequence
(BLAST)

001: MSRLRPRRSS TTPMFHLLRR SSSSTSTSTP TLRPSRSWSP HAAFAAATER VRAGTLSPED AHHLFDELLR QATPVPSRSL DGFIAALARA PASAACIRDG
101: PALALGLFNR VCRDEAGARV APRTIFTYGI LMNCCCCAHR PDLGLALFGR FLRTGMKANE IIATTFLKCL CSAKRTDEAV NLLLHRIPEL GCVRNAFSYS
201: IVLKSFCENS MSQRGLDLLQ MMAKEGGACS PNVVAYSTVI HGFFKEGETG KACNLFHEMM QQGVVPTVAT YNSIIDALCK ARAMDKAEIV LRQMVDNGAQ
301: PDNWTYNCMI HGYSTSGQLR EATKMLRKMT TRGLIPDIVT CSSLMASLCK HGRSKEASDF FVP

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.