Factsheet for TraesCS7D01G231400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G083400.1	Wheat	mitochondrion	80.4	65.72
TraesCS6D01G083300.1	Wheat	mitochondrion	72.7	65.7
TraesCS6D01G083100.1	Wheat	cytosol	75.19	61.84
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	64.02	53.64
TraesCS1D01G057800.1	Wheat	mitochondrion	43.92	48.76
TraesCS1D01G068600.1	Wheat	plastid	40.2	47.65
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	38.71	45.61
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	25.56	45.18
TraesCS1D01G058000.1	Wheat	cytosol	43.42	43.1
TraesCS1D01G056600.1	Wheat	mitochondrion	20.6	41.09
TraesCS6D01G076500.1	Wheat	plastid	40.69	36.2
TraesCS6D01G290900.1	Wheat	mitochondrion	50.62	27.83
Solyc06g007280.2.1	Tomato	cytosol	17.37	27.45
TraesCS1D01G056200.1	Wheat	mitochondrion	54.59	26.67
TraesCS1D01G076900.1	Wheat	plastid	43.42	26.64
TraesCS1D01G068900.1	Wheat	mitochondrion	53.6	26.57
TraesCS1D01G068800.1	Wheat	plastid	53.1	26.23
TraesCS1D01G069100.1	Wheat	mitochondrion	41.69	26.13
TraesCS1D01G068500.1	Wheat	mitochondrion	52.36	25.99
TraesCS1D01G076400.1	Wheat	cytosol	23.08	25.62
TraesCS1D01G068400.1	Wheat	mitochondrion	51.86	25.39
TraesCS2D01G532300.1	Wheat	plastid	48.14	24.94
TraesCS2D01G532600.1	Wheat	plastid	47.15	24.48
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	41.69	24.1
TraesCS1D01G076500.1	Wheat	mitochondrion	39.7	24.1
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	46.9	24.02
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	47.15	23.99
TraesCS6D01G047700.1	Wheat	mitochondrion	39.95	23.3
TraesCS2D01G532400.1	Wheat	cytosol	34.99	23.08
TraesCS1D01G058500.1	Wheat	plastid	32.26	22.81
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	40.45	22.8
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	36.72	22.46
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	36.97	22.14
TraesCS2D01G532100.1	Wheat	mitochondrion	36.48	21.24
TraesCS1D01G055300.1	Wheat	cytosol	32.26	21.04
TraesCS2D01G532500.1	Wheat	plastid	35.48	21.03
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.32	20.55
TraesCS1D01G056700.1	Wheat	cytosol	30.52	20.26
TraesCS1D01G058400.1	Wheat	cytosol	25.81	20.19
KRH09084	Soybean	plastid	25.56	20.16
KRH39054	Soybean	cytosol	24.32	19.72
AT1G62914.1	Thale cress	mitochondrion	25.81	19.7
KRH40513	Soybean	plastid	17.12	19.66
KRH39004	Soybean	cytosol	23.57	19.11
KRH39057	Soybean	cytosol	23.57	19.11
KRH39112	Soybean	cytosol	23.57	19.11
KRH39072	Soybean	cytosol	23.08	18.75
KRH39074	Soybean	cytosol	23.08	18.71
TraesCS6D01G017800.1	Wheat	cytosol	24.81	18.62
KRH09121	Soybean	mitochondrion	24.32	18.35
KRH17148	Soybean	mitochondrion	24.81	18.35
KRH08639	Soybean	mitochondrion, plastid	25.31	18.05
AT1G63400.1	Thale cress	cytosol, plastid	25.81	18.02
KRH39066	Soybean	cytosol	24.81	18.02
AT1G63080.3	Thale cress	mitochondrion	27.3	17.92
Bra036649.1-P	Field mustard	cytosol	17.37	17.9
VIT_14s0030g02280.t01	Wine grape	plastid	24.81	17.83
KRH08636	Soybean	cytosol	23.08	17.82
KRH09154	Soybean	mitochondrion	24.32	17.63
Bra026958.1-P	Field mustard	mitochondrion	27.79	17.58
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.84	17.43
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.34	17.37
AT5G16640.1	Thale cress	mitochondrion	21.59	17.26
Bra021192.1-P	Field mustard	plastid	21.59	17.26
KRH09097	Soybean	plastid	24.81	17.15
KRH41817	Soybean	mitochondrion	23.57	17.12
KRH08607	Soybean	cytosol	23.82	17.11
KRH39050	Soybean	mitochondrion	22.58	17.11
VIT_14s0081g00270.t01	Wine grape	plastid	24.57	17.07
TraesCS6D01G017700.1	Wheat	plastid	22.58	17.04
KRH08628	Soybean	plastid	23.33	17.03
AT1G62930.1	Thale cress	plastid	26.55	17.01
KRH31646	Soybean	cytosol	21.84	16.99
AT1G63130.1	Thale cress	mitochondrion	26.3	16.83
AT1G63330.2	Thale cress	cytosol	23.33	16.82
AT1G12300.1	Thale cress	mitochondrion	26.55	16.8
PGSC0003DMT400053556	Potato	mitochondrion	19.11	16.78
KRH09095	Soybean	plastid	24.32	16.75
KRH08625	Soybean	plastid	23.82	16.67
Bra028267.1-P	Field mustard	mitochondrion	25.81	16.61
PGSC0003DMT400025067	Potato	cytosol	19.6	16.6
AT4G26800.2	Thale cress	mitochondrion, plastid	21.09	16.54
Bra026971.1-P	Field mustard	mitochondrion	25.81	16.53
AT1G62670.1	Thale cress	mitochondrion	25.81	16.51
Solyc06g005220.2.1	Tomato	cytosol	16.63	16.5
VIT_14s0081g00110.t01	Wine grape	cytosol	20.1	16.5
Bra036651.1-P	Field mustard	mitochondrion	21.84	16.45
AT1G64580.1	Thale cress	mitochondrion	21.34	16.44
KRH08277	Soybean	plastid	23.08	16.4
KRH48615	Soybean	mitochondrion	22.08	16.33
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.06	16.32
AT1G12775.1	Thale cress	cytosol, mitochondrion	26.05	16.3
PGSC0003DMT400025074	Potato	cytosol	22.33	16.3
AT1G12620.1	Thale cress	cytosol, mitochondrion	25.06	16.26
PGSC0003DMT400056663	Potato	plastid	23.57	16.16
PGSC0003DMT400056665	Potato	mitochondrion	23.57	16.13
VIT_14s0081g00120.t01	Wine grape	plastid	23.33	16.12
PGSC0003DMT400053185	Potato	mitochondrion	23.57	16.1
Solyc06g007740.1.1	Tomato	cytosol	23.57	16.1
KRH08671	Soybean	cytosol, mitochondrion	22.08	16.09
Bra026957.1-P	Field mustard	mitochondrion	24.07	16.09
AT1G62720.1	Thale cress	mitochondrion	19.35	16.08
PGSC0003DMT400008757	Potato	cytosol	19.85	16.06
Bra027029.1-P	Field mustard	mitochondrion	9.68	16.05
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.84	16.0
KRH40400	Soybean	plastid	22.83	15.94
Bra026882.1-P	Field mustard	cytosol	21.09	15.92
Bra027026.1-P	Field mustard	mitochondrion	20.6	15.87
AT1G62910.1	Thale cress	mitochondrion	24.81	15.82
AT1G62590.1	Thale cress	mitochondrion	24.81	15.77
Bra027636.1-P	Field mustard	cytosol	12.66	15.74
AT1G06580.1	Thale cress	mitochondrion	19.35	15.6
AT1G63070.1	Thale cress	mitochondrion	22.83	15.59
AT3G16710.1	Thale cress	mitochondrion	19.6	15.58
Solyc06g007300.1.1	Tomato	extracellular	22.83	15.54
Bra026954.1-P	Field mustard	mitochondrion	25.06	15.54
Bra016762.1-P	Field mustard	mitochondrion	23.33	15.49
KRH09082	Soybean	cytosol	15.63	15.44
AT1G64583.1	Thale cress	mitochondrion	19.6	15.43
AT1G12700.2	Thale cress	cytosol	23.57	15.37
KRH25652	Soybean	cytosol, golgi	20.6	15.37
AT1G63150.1	Thale cress	mitochondrion	23.82	15.26
Bra026884.1-P	Field mustard	cytosol	17.12	15.03
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.82	15.02
Bra026401.1-P	Field mustard	plastid	19.85	14.95
PGSC0003DMT400008760	Potato	mitochondrion	21.59	14.85
PGSC0003DMT400052971	Potato	mitochondrion	21.84	14.84
AT5G41170.1	Thale cress	mitochondrion	19.35	14.8
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.37	14.68
PGSC0003DMT400053182	Potato	cytosol	21.59	14.52
Bra031731.1-P	Field mustard	mitochondrion	18.11	14.37
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.35	14.36
Solyc04g080120.1.1	Tomato	extracellular	21.59	14.22
AT1G62680.2	Thale cress	plastid	19.11	14.05
Bra027726.1-P	Field mustard	mitochondrion	16.38	14.01
PGSC0003DMT400015293	Potato	mitochondrion	20.84	13.77
PGSC0003DMT400015298	Potato	mitochondrion	20.84	13.77
PGSC0003DMT400052977	Potato	cytosol	13.15	13.62
KRH09085	Soybean	mitochondrion	23.08	13.21
KRH08599	Soybean	cytosol, plastid	21.59	13.0
Bra006187.1-P	Field mustard	plastid	9.18	12.71
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.14	12.42
AT1G64100.2	Thale cress	cytosol	24.07	12.03
KRH12873	Soybean	cytosol	20.35	11.78
Bra027656.1-P	Field mustard	cytosol	26.8	11.48
PGSC0003DMT400008759	Potato	cytosol	8.68	10.97
KRH39064	Soybean	cytosol	25.31	10.53
VIT_14s0030g02260.t01	Wine grape	cytosol	10.17	9.26
Bra016758.1-P	Field mustard	plastid	23.57	8.2
Solyc06g007810.1.1	Tomato	cytosol	3.97	5.97
TraesCS1D01G068700.1	Wheat	cytosol	5.96	5.47
TraesCS1D01G033000.1	Wheat	cytosol	0.99	0.99
CDX68679	Canola	cytosol	0.0	0.0
TraesCS1D01G057700.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G067600.1	Wheat	cytosol	0.0	0.0
TraesCS1D01G076700.1	Wheat	cytosol	0.0	0.0
TraesCS2D01G532200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS7D01G231400.1	EnsemblPlantsGene:TraesCS7D01G231400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:192447546..192448757

Molecular Weight (calculated)

45147.7 Da

IEP (calculated)

7.410

GRAVY (calculated)

0.169

Length

403 amino acids

Sequence
(BLAST)

001: MSHSFSSSVS SCANELLNEL HDHLGFRTLR PELAHQLFDE MLRQPVPVSV RALNDLFVAL ARAPPSTICT DGPALAIDLF NRMAQAGRRQ VIAPTIITYN
101: ILIDCCHRAC RPDLGHAFFG RLLKTGITMS VITYNSLFMC LCDMRRTKEA LNMLLHRMPD DLPNVISYSV ILKSFSDSGR SQLALDLLQM MAKKGADHSP
201: DVMSYNIVID GFFKEGEVSK ACDLFQEMIR QGIVPTKVTY ISIINALCKA RAMDKVEVVL RSMVHNGVQP EAVTYSSMIQ GYSTLGQLKE VARLLQVMRS
301: QCCMPNVVTC SSVMDYLCKH GRIKEAEEIF YSMAVNGRKP NVISYSIMLH GYAIEGTLIK MIDLCELMAR DGVVPDLRCF NILINAYAKY GMMDVAMLFF
401: EDM

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.