Factsheet for TraesCS1D01G068700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057700.1	Wheat	cytosol	51.71	69.85
TraesCS1D01G076700.1	Wheat	cytosol	51.94	68.26
TraesCS1D01G067600.1	Wheat	cytosol	55.13	66.3
TraesCS1D01G033000.1	Wheat	cytosol	56.49	61.39
TraesCS2D01G532200.1	Wheat	cytosol	35.99	53.92
TraesCS1D01G058400.1	Wheat	cytosol	62.87	53.59
TraesCS1D01G055300.1	Wheat	cytosol	67.65	48.06
TraesCS1D01G056700.1	Wheat	cytosol	64.46	46.62
TraesCS1D01G076500.1	Wheat	mitochondrion	69.48	45.93
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	71.75	45.19
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	67.88	44.28
TraesCS1D01G068800.1	Wheat	plastid	81.32	43.75
TraesCS1D01G058500.1	Wheat	plastid	56.26	43.33
TraesCS1D01G068500.1	Wheat	mitochondrion	79.27	42.86
TraesCS1D01G068400.1	Wheat	mitochondrion	76.54	40.83
TraesCS1D01G069100.1	Wheat	mitochondrion	58.77	40.12
TraesCS1D01G068900.1	Wheat	mitochondrion	72.44	39.11
KXG35774	Sorghum	cytosol, mitochondrion	40.09	37.21
TraesCS1D01G056200.1	Wheat	mitochondrion	69.02	36.73
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	54.67	36.42
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	63.33	35.32
TraesCS2D01G532500.1	Wheat	plastid	54.21	35.0
TraesCS2D01G532400.1	Wheat	cytosol	48.29	34.7
TraesCS1D01G076400.1	Wheat	cytosol	28.47	34.44
TraesCS2D01G532100.1	Wheat	mitochondrion	54.21	34.39
TraesCS6D01G017700.1	Wheat	plastid	41.46	34.08
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	61.05	33.84
TraesCS6D01G290900.1	Wheat	mitochondrion	55.81	33.42
TraesCS6D01G017800.1	Wheat	cytosol	39.86	32.59
Zm00001d007534_P001	Maize	plastid	55.35	31.27
TraesCS2D01G532600.1	Wheat	plastid	55.13	31.19
TraesCS2D01G532300.1	Wheat	plastid	54.21	30.59
Zm00001d007548_P001	Maize	plastid	56.49	30.47
Zm00001d007555_P001	Maize	plastid	56.26	30.34
Zm00001d007559_P001	Maize	plastid	56.26	30.23
Zm00001d007531_P001	Maize	plastid	56.04	30.22
TraesCS1D01G076900.1	Wheat	plastid	44.87	29.98
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	52.16	29.9
KXG28799	Sorghum	plastid	50.11	28.95
Os04t0351333-00	Rice	cytosol	56.72	28.33
Solyc06g007810.1.1	Tomato	cytosol	16.63	27.24
CDX68679	Canola	cytosol	7.06	26.96
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	39.41	24.2
TraesCS1D01G058000.1	Wheat	cytosol	21.64	23.4
PGSC0003DMT400008759	Potato	cytosol	16.86	23.2
Bra006187.1-P	Field mustard	plastid	13.44	20.27
VIT_14s0030g02260.t01	Wine grape	cytosol	18.68	18.51
VIT_14s0081g00110.t01	Wine grape	cytosol	20.05	17.92
Bra027636.1-P	Field mustard	cytosol	13.21	17.9
TraesCS6D01G047700.1	Wheat	mitochondrion	27.33	17.37
PGSC0003DMT400052977	Potato	cytosol	15.26	17.22
Bra027029.1-P	Field mustard	mitochondrion	9.34	16.87
Bra026884.1-P	Field mustard	cytosol	16.86	16.12
KRH39074	Soybean	cytosol	18.0	15.9
Solyc06g005220.2.1	Tomato	cytosol	14.58	15.76
Bra026882.1-P	Field mustard	cytosol	19.13	15.73
KRH39004	Soybean	cytosol	17.31	15.29
KRH39054	Soybean	cytosol	17.31	15.29
KRH39057	Soybean	cytosol	17.31	15.29
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.54	15.25
KRH09082	Soybean	cytosol	13.9	14.95
VIT_14s0081g00120.t01	Wine grape	plastid	19.82	14.92
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.63	14.87
KRH08636	Soybean	cytosol	17.54	14.75
KRH39072	Soybean	cytosol	16.63	14.72
KRH39112	Soybean	cytosol	16.63	14.69
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.95	14.68
PGSC0003DMT400008757	Potato	cytosol	16.63	14.66
VIT_14s0081g00270.t01	Wine grape	plastid	19.36	14.66
KRH08607	Soybean	cytosol	18.22	14.26
Bra031731.1-P	Field mustard	mitochondrion	16.17	13.98
KRH08628	Soybean	plastid	17.54	13.95
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	15.26	13.93
KRH25652	Soybean	cytosol, golgi	16.86	13.7
TraesCS6D01G083300.1	Wheat	mitochondrion	13.9	13.68
KRH08671	Soybean	cytosol, mitochondrion	17.08	13.56
KRH08625	Soybean	plastid	17.77	13.54
KRH39066	Soybean	cytosol	17.08	13.51
VIT_14s0081g00280.t01	Wine grape	mitochondrion	19.59	13.46
KRH08639	Soybean	mitochondrion, plastid	17.31	13.45
PGSC0003DMT400025067	Potato	cytosol	14.58	13.45
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.58	13.42
KRH08277	Soybean	plastid	17.08	13.23
KRH17148	Soybean	mitochondrion	16.4	13.21
TraesCS6D01G083400.1	Wheat	mitochondrion	14.81	13.18
Bra036649.1-P	Field mustard	cytosol	11.62	13.04
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.58	12.93
KRH48615	Soybean	mitochondrion	15.95	12.84
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.72	12.71
PGSC0003DMT400025074	Potato	cytosol	15.95	12.68
KRH40400	Soybean	plastid	16.63	12.65
AT1G62680.2	Thale cress	plastid	15.72	12.59
KRH09154	Soybean	mitochondrion	15.95	12.59
Bra036651.1-P	Field mustard	mitochondrion	15.26	12.52
AT1G63330.2	Thale cress	cytosol	15.95	12.52
Solyc06g007740.1.1	Tomato	cytosol	16.63	12.37
Bra027726.1-P	Field mustard	mitochondrion	13.21	12.31
AT1G62930.1	Thale cress	plastid	17.54	12.24
PGSC0003DMT400056665	Potato	mitochondrion	16.4	12.22
PGSC0003DMT400053185	Potato	mitochondrion	16.4	12.2
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	14.58	12.19
AT5G41170.1	Thale cress	mitochondrion	14.58	12.14
AT3G22470.1	Thale cress	cytosol, mitochondrion	17.08	12.12
Bra026958.1-P	Field mustard	mitochondrion	17.54	12.09
AT1G63130.1	Thale cress	mitochondrion	17.31	12.06
AT3G16710.1	Thale cress	mitochondrion	13.9	12.03
PGSC0003DMT400053182	Potato	cytosol	16.4	12.02
KRH31646	Soybean	cytosol	14.12	11.97
KRH09084	Soybean	plastid	13.9	11.94
AT5G16640.1	Thale cress	mitochondrion	13.67	11.9
AT1G63070.1	Thale cress	mitochondrion	15.95	11.86
Bra027026.1-P	Field mustard	mitochondrion	14.12	11.85
AT1G12700.2	Thale cress	cytosol	16.63	11.81
AT1G12620.1	Thale cress	cytosol, mitochondrion	16.63	11.76
AT1G62910.1	Thale cress	mitochondrion	16.86	11.71
AT1G64580.1	Thale cress	mitochondrion	13.9	11.66
Bra028267.1-P	Field mustard	mitochondrion	16.63	11.66
TraesCS6D01G083100.1	Wheat	cytosol	12.98	11.63
AT1G12300.1	Thale cress	mitochondrion	16.86	11.62
PGSC0003DMT400008760	Potato	mitochondrion	15.49	11.6
Solyc04g080120.1.1	Tomato	extracellular	16.17	11.6
AT1G62670.1	Thale cress	mitochondrion	16.63	11.59
AT1G63080.3	Thale cress	mitochondrion	16.17	11.56
AT1G62720.1	Thale cress	mitochondrion	12.76	11.55
Bra016762.1-P	Field mustard	mitochondrion	15.95	11.53
Bra021192.1-P	Field mustard	plastid	13.21	11.51
Solyc06g007300.1.1	Tomato	extracellular	15.49	11.49
AT1G63150.1	Thale cress	mitochondrion	16.4	11.45
KRH09121	Soybean	mitochondrion	13.9	11.42
AT1G06580.1	Thale cress	mitochondrion	12.98	11.4
PGSC0003DMT400056663	Potato	plastid	15.26	11.39
KRH08599	Soybean	cytosol, plastid	17.31	11.36
KRH41817	Soybean	mitochondrion	14.35	11.35
AT1G64583.1	Thale cress	mitochondrion	13.21	11.33
PGSC0003DMT400015293	Potato	mitochondrion	15.72	11.31
PGSC0003DMT400015298	Potato	mitochondrion	15.72	11.31
KRH39050	Soybean	mitochondrion	13.67	11.28
Bra026957.1-P	Field mustard	mitochondrion	15.49	11.28
AT1G12775.1	Thale cress	cytosol, mitochondrion	16.4	11.18
PGSC0003DMT400052971	Potato	mitochondrion	15.03	11.13
Bra026971.1-P	Field mustard	mitochondrion	15.95	11.13
VIT_14s0030g02280.t01	Wine grape	plastid	14.12	11.05
AT1G62590.1	Thale cress	mitochondrion	15.95	11.04
AT1G63400.1	Thale cress	cytosol, plastid	14.35	10.92
KRH40513	Soybean	plastid	8.66	10.83
Bra026954.1-P	Field mustard	mitochondrion	15.95	10.77
Bra027656.1-P	Field mustard	cytosol	21.64	10.1
KRH09097	Soybean	plastid	13.21	9.95
AT1G64100.2	Thale cress	cytosol	18.22	9.93
KRH09095	Soybean	plastid	13.21	9.91
Bra026401.1-P	Field mustard	plastid	11.85	9.72
KRH12873	Soybean	cytosol	14.58	9.2
PGSC0003DMT400053556	Potato	mitochondrion	9.57	9.15
KRH09085	Soybean	mitochondrion	13.9	8.66
AT4G26800.2	Thale cress	mitochondrion, plastid	9.79	8.37
AT1G62914.1	Thale cress	mitochondrion	10.02	8.33
KRH39064	Soybean	cytosol	18.22	8.26
Solyc06g007280.2.1	Tomato	cytosol	4.78	8.24
TraesCS6D01G076500.1	Wheat	plastid	6.83	6.62
Bra016758.1-P	Field mustard	plastid	16.17	6.13
TraesCS7D01G231400.1	Wheat	cytosol, plastid	5.47	5.96
Os04t0349600-01	Rice	plastid	3.87	4.39
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	1.82	2.34
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.23	0.44
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0
TraesCS1D01G057800.1	Wheat	mitochondrion	0.0	0.0
TraesCS1D01G068600.1	Wheat	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G068700.1	EnsemblPlantsGene:TraesCS1D01G068700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:50008490..50012227

Molecular Weight (calculated)

48282.0 Da

IEP (calculated)

5.891

GRAVY (calculated)

0.194

Length

439 amino acids

Sequence
(BLAST)

001: MMSLFNSMEG DGIVANSYVF NILINAYAKG GMMDEAMLIL TEMRGQGLSP DVFTYSTLVS AFCRMGRLAD AMDKFSQMIG TGVQPNTVVY HSLVQGLCTH
101: GDLVKAKELI SEMMNKGMIR PNIAFFNSIM DSLCNEGRVV DAHHIFDLVT DIGEKPDVIT FSTLIDGYCL VGEMEKACRV FDAMVSAGIE PDVITYSTLV
201: SGYCKSGRID DGLILFREML HKEVKPTTVT YGTVLDGLFR AWRSAAAKKV FHEMIESGIM VSISIYNIIL GGLCRNNCAD EAIVLFQKLC AMNVKFNITT
301: LNIMLNAFYK VQRRDEASDL FAALPASGLV PNASTYGVMI QNLLKEGAVE EADSMFSSME KSGCAPSSRF SNCIIRTLLE QGEIVKAGKY MSKVDGKTFL
401: LEASTTSLLM SLFSRGGKYQ EHILLLPAKY QFFSGVNHS

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.