Factsheet for TraesCS1D01G056200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	64.48	79.05
TraesCS1D01G055300.1	Wheat	cytosol	59.15	78.96
TraesCS1D01G058000.1	Wheat	cytosol	38.67	78.57
TraesCS1A01G054800.1	Wheat	cytosol	55.27	78.35
TraesCS1D01G056700.1	Wheat	cytosol	57.09	77.59
TraesCS1B01G072300.1	Wheat	plastid	52.97	76.94
TraesCS1D01G058400.1	Wheat	cytosol	47.76	76.5
TraesCS1D01G058500.1	Wheat	plastid	52.61	76.14
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	64.24	76.04
TraesCS1D01G057800.1	Wheat	mitochondrion	32.97	74.93
TraesCS1D01G056600.1	Wheat	mitochondrion	18.06	73.76
TraesCS1D01G057700.1	Wheat	cytosol	28.97	73.54
TraesCS1D01G076700.1	Wheat	cytosol	28.97	71.56
TraesCS1D01G068900.1	Wheat	mitochondrion	69.94	70.97
TraesCS1D01G076500.1	Wheat	mitochondrion	56.61	70.33
TraesCS1D01G068400.1	Wheat	mitochondrion	70.06	70.23
TraesCS1D01G068800.1	Wheat	plastid	69.09	69.85
TraesCS1D01G068600.1	Wheat	plastid	28.48	69.12
TraesCS1D01G068500.1	Wheat	mitochondrion	68.0	69.09
TraesCS1D01G068700.1	Wheat	cytosol	36.73	69.02
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	19.03	68.86
TraesCS1D01G067600.1	Wheat	cytosol	29.82	67.4
TraesCS6D01G290900.1	Wheat	mitochondrion	59.88	67.39
TraesCS1D01G069100.1	Wheat	mitochondrion	51.76	66.41
TraesCS1D01G076400.1	Wheat	cytosol	29.09	66.12
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	26.79	64.62
TraesCS1D01G076900.1	Wheat	plastid	49.58	62.25
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	57.58	60.36
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	57.7	60.1
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	47.03	58.88
TraesCS2D01G532600.1	Wheat	plastid	55.27	58.76
TraesCS1D01G033000.1	Wheat	cytosol	28.73	58.66
KXG28799	Sorghum	plastid	53.58	58.16
TraesCS2D01G532400.1	Wheat	cytosol	42.91	57.94
TraesCS2D01G532300.1	Wheat	plastid	54.3	57.58
Zm00001d007548_P001	Maize	plastid	56.24	57.0
Zm00001d007531_P001	Maize	plastid	56.12	56.88
Zm00001d007559_P001	Maize	plastid	56.24	56.79
TraesCS2D01G532500.1	Wheat	plastid	46.79	56.76
Zm00001d007534_P001	Maize	plastid	53.45	56.76
Zm00001d007555_P001	Maize	plastid	55.88	56.63
TraesCS2D01G532200.1	Wheat	cytosol	19.76	55.63
TraesCS6D01G083300.1	Wheat	mitochondrion	30.06	55.61
TraesCS2D01G532100.1	Wheat	mitochondrion	46.3	55.2
TraesCS7D01G231400.1	Wheat	cytosol, plastid	26.67	54.59
TraesCS6D01G083400.1	Wheat	mitochondrion	32.61	54.56
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	30.67	52.6
TraesCS6D01G083100.1	Wheat	cytosol	31.15	52.45
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.0	51.7
KXG35774	Sorghum	cytosol, mitochondrion	29.58	51.59
TraesCS6D01G017800.1	Wheat	cytosol	31.15	47.86
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	39.88	46.01
TraesCS6D01G017700.1	Wheat	plastid	29.58	45.69
Os04t0351333-00	Rice	cytosol	46.91	44.03
Os04t0349600-01	Rice	plastid	20.61	43.93
TraesCS6D01G076500.1	Wheat	plastid	23.03	41.94
TraesCS6D01G047700.1	Wheat	mitochondrion	34.42	41.1
Solyc06g007280.2.1	Tomato	cytosol	11.03	35.69
KRH39054	Soybean	cytosol	20.24	33.6
KRH39057	Soybean	cytosol	19.88	33.0
KRH39074	Soybean	cytosol	19.76	32.8
KRH39112	Soybean	cytosol	19.64	32.6
KRH39004	Soybean	cytosol	19.39	32.19
Solyc06g005220.2.1	Tomato	cytosol	15.64	31.77
KRH39072	Soybean	cytosol	18.91	31.45
KRH09084	Soybean	plastid	19.39	31.31
KRH08636	Soybean	cytosol	19.39	30.65
KRH17148	Soybean	mitochondrion	20.12	30.46
KRH39066	Soybean	cytosol	20.36	30.27
VIT_14s0081g00110.t01	Wine grape	cytosol	17.82	29.94
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.3	29.9
PGSC0003DMT400008759	Potato	cytosol	11.52	29.78
KRH40513	Soybean	plastid	12.61	29.63
Solyc06g007810.1.1	Tomato	cytosol	9.58	29.48
KRH08607	Soybean	cytosol	20.0	29.41
KRH08628	Soybean	plastid	19.64	29.35
PGSC0003DMT400052977	Potato	cytosol	13.82	29.31
KRH08671	Soybean	cytosol, mitochondrion	19.64	29.29
KRH08639	Soybean	mitochondrion, plastid	19.88	29.03
Bra026882.1-P	Field mustard	cytosol	18.79	29.03
KRH08277	Soybean	plastid	19.88	28.92
Bra006187.1-P	Field mustard	plastid	10.18	28.87
Bra026884.1-P	Field mustard	cytosol	16.0	28.76
VIT_12s0028g02320.t01	Wine grape	mitochondrion	16.61	28.72
PGSC0003DMT400008757	Potato	cytosol	17.33	28.71
Bra027636.1-P	Field mustard	cytosol	11.27	28.7
KRH09121	Soybean	mitochondrion	18.55	28.65
KRH08625	Soybean	plastid	20.0	28.65
KRH48615	Soybean	mitochondrion	18.91	28.62
KRH09154	Soybean	mitochondrion	19.27	28.6
AT1G63330.2	Thale cress	cytosol	19.27	28.44
VIT_14s0081g00120.t01	Wine grape	plastid	20.0	28.3
KRH40400	Soybean	plastid	19.76	28.25
KRH09082	Soybean	cytosol	13.94	28.19
PGSC0003DMT400025067	Potato	cytosol	16.12	27.94
Bra036649.1-P	Field mustard	cytosol	13.21	27.88
CDX68679	Canola	cytosol	3.88	27.83
AT5G16640.1	Thale cress	mitochondrion	16.85	27.58
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.73	27.54
AT1G63080.3	Thale cress	mitochondrion	20.48	27.52
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.48	27.47
AT1G62670.1	Thale cress	mitochondrion	20.97	27.46
AT1G12300.1	Thale cress	mitochondrion	21.09	27.32
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.33	27.24
KRH25652	Soybean	cytosol, golgi	17.82	27.22
AT1G62930.1	Thale cress	plastid	20.73	27.19
PGSC0003DMT400025074	Potato	cytosol	18.18	27.17
AT1G63130.1	Thale cress	mitochondrion	20.73	27.14
VIT_14s0081g00270.t01	Wine grape	plastid	19.03	27.07
KRH39050	Soybean	mitochondrion	17.45	27.07
Solyc06g007740.1.1	Tomato	cytosol	19.27	26.95
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.97	26.86
Bra016762.1-P	Field mustard	mitochondrion	19.76	26.85
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.12	26.82
Bra021192.1-P	Field mustard	plastid	16.36	26.79
PGSC0003DMT400053185	Potato	mitochondrion	19.15	26.78
AT1G64580.1	Thale cress	mitochondrion	16.97	26.77
Bra027029.1-P	Field mustard	mitochondrion	7.88	26.75
Bra036651.1-P	Field mustard	mitochondrion	17.33	26.73
AT1G63400.1	Thale cress	cytosol, plastid	18.67	26.69
Bra028267.1-P	Field mustard	mitochondrion	20.24	26.68
PGSC0003DMT400056665	Potato	mitochondrion	19.03	26.66
Bra026954.1-P	Field mustard	mitochondrion	20.97	26.62
Bra026971.1-P	Field mustard	mitochondrion	20.24	26.55
Bra026958.1-P	Field mustard	mitochondrion	20.48	26.53
KRH09097	Soybean	plastid	18.67	26.42
VIT_14s0030g02280.t01	Wine grape	plastid	17.94	26.38
KRH41817	Soybean	mitochondrion	17.7	26.31
AT1G63070.1	Thale cress	mitochondrion	18.79	26.27
AT1G62910.1	Thale cress	mitochondrion	20.12	26.27
PGSC0003DMT400056663	Potato	plastid	18.67	26.19
KRH09095	Soybean	plastid	18.55	26.15
AT1G62914.1	Thale cress	mitochondrion	16.73	26.14
Solyc06g007300.1.1	Tomato	extracellular	18.67	26.01
AT1G64583.1	Thale cress	mitochondrion	16.12	25.98
AT1G62590.1	Thale cress	mitochondrion	19.88	25.87
Bra031731.1-P	Field mustard	mitochondrion	15.88	25.79
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.91	25.79
PGSC0003DMT400008760	Potato	mitochondrion	18.3	25.77
KRH31646	Soybean	cytosol	16.12	25.68
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.85	25.6
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.15	25.46
AT1G63150.1	Thale cress	mitochondrion	19.39	25.44
AT1G62720.1	Thale cress	mitochondrion	14.91	25.36
PGSC0003DMT400053182	Potato	cytosol	18.3	25.21
Solyc04g080120.1.1	Tomato	extracellular	18.67	25.16
Bra026401.1-P	Field mustard	plastid	16.24	25.05
VIT_14s0081g00280.t01	Wine grape	mitochondrion	19.27	24.88
Bra027026.1-P	Field mustard	mitochondrion	15.76	24.86
AT3G16710.1	Thale cress	mitochondrion	15.27	24.85
AT1G62680.2	Thale cress	plastid	16.48	24.82
AT1G06580.1	Thale cress	mitochondrion	15.03	24.8
PGSC0003DMT400015293	Potato	mitochondrion	18.3	24.75
PGSC0003DMT400015298	Potato	mitochondrion	18.3	24.75
PGSC0003DMT400052971	Potato	mitochondrion	17.7	24.62
Bra026957.1-P	Field mustard	mitochondrion	17.82	24.38
PGSC0003DMT400053556	Potato	mitochondrion	13.45	24.18
AT1G12700.2	Thale cress	cytosol	18.06	24.11
AT5G41170.1	Thale cress	mitochondrion	15.39	24.1
Bra027726.1-P	Field mustard	mitochondrion	13.58	23.78
AT4G26800.2	Thale cress	mitochondrion, plastid	14.55	23.35
KRH08599	Soybean	cytosol, plastid	18.79	23.17
VIT_14s0030g02260.t01	Wine grape	cytosol	12.0	22.35
AT1G64100.2	Thale cress	cytosol	21.82	22.33
KRH09085	Soybean	mitochondrion	18.55	21.73
KRH12873	Soybean	cytosol	16.61	19.68
Bra027656.1-P	Field mustard	cytosol	21.58	18.92
KRH39064	Soybean	cytosol	21.09	17.96
Bra016758.1-P	Field mustard	plastid	19.64	13.98

Protein Annotations

EnsemblPlants:TraesCS1D01G056200.1	EnsemblPlantsGene:TraesCS1D01G056200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:37423792..37426269

Molecular Weight (calculated)

90837.0 Da

IEP (calculated)

8.434

GRAVY (calculated)

0.023

Length

825 amino acids

Sequence
(BLAST)

001: MPRSRLRRYA STMPMSSLRP LHRSSSSTTS PARAWSPHAA FAAATERVRA GTVRPEDAHT LFDELLRQAT PVPQRSLNGF LAALARAPAS GACIRDGPAL
101: AVALFNRVCR DEAGPQVAAL TGCTYSILMD CCCRARRPDL GLALFGRFLR EGLKTDQIVA NTFLKCLCYA KRTDEAVDVL LHRMSELGCV PDAFSYNTVL
201: KSLCDNGMSQ RALDLLQRMA KEGGVCSLNL VAYNTVIHGF FKEGETGKAC SLFHEMMQQG VVPNVWTYTS IIDALCKARA MDKAELVLRQ MVAKGAQPDI
301: VTYTCMINGY ATSGRLKEAA KMFREMKSRG LTPNIVTCGS LMTYLCKHGR SKEAREIFDS MTAKGHRANV VSYCILLHGY ANEGCFADMI DLFNSMKSNG
401: IAADCRVFNI LINGYAKRGK MDEAMLIFTE MWEKGVSPDV VTYSTVIAAL SRMGRLTDAM DKFNQMISMG VQPNTAVYHS LIQGSCMHGD LIKAKELVSE
501: MMNKGIPRPS IAFFGSIINR LCKDGRVMDA HDIFDLVIDI GERPSVITFN SLIDGYCLVG KMDKAFKILD AMEVVGVESD VITYSTLLDG YFKNGRINDG
601: LTLFREMPHK GIKPDTVTYG IMLDGLFRAG RTVAVRTVFH EMIESGITVD IPTYNIVLGG LCRNNCTDEA IALFQKLGAM SVKSNIAILN TMIDGMYKVR
701: RREEANDLFA TISASGLVPN ESTYAVMIIN LLKDGAVEEA DNMFSSMEKT GIVPSSRLLN HIIRMLLEIG EIAKAGNYLS KVDGKSISLE ASTTSLMLSF
801: FSKKGKYRED MKLLPAKFQI FDGFG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.