Factsheet for Zm00001d007548_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013757_P010
Zm00001d033159_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G62670.1	Zm00001d033159_P001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007559_P001	Maize	plastid	99.51	99.14
Zm00001d007555_P001	Maize	plastid	96.81	96.81
Zm00001d007531_P001	Maize	plastid	96.68	96.68
Zm00001d007534_P001	Maize	plastid	92.14	96.53
KXG28799	Sorghum	plastid	75.43	80.79
KXG35774	Sorghum	cytosol, mitochondrion	40.66	69.98
TraesCS2B01G126900.1	Wheat	cytosol	28.75	61.26
TraesCS1D01G058500.1	Wheat	plastid	42.01	60.0
TraesCS1B01G038400.1	Wheat	cytosol	44.23	59.21
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	50.12	58.54
TraesCS1A01G031600.1	Wheat	cytosol	47.54	58.46
TraesCS1D01G058400.1	Wheat	cytosol	36.85	58.25
TraesCS1D01G076700.1	Wheat	cytosol	23.83	58.08
TraesCS1B01G039700.1	Wheat	cytosol	43.37	58.06
TraesCS1D01G076500.1	Wheat	mitochondrion	46.81	57.38
TraesCS1A01G055600.1	Wheat	cytosol	22.85	57.23
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	55.04	56.92
TraesCS1B01G085900.1	Wheat	mitochondrion	56.76	56.76
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	48.65	56.65
TraesCS1D01G058000.1	Wheat	cytosol	28.26	56.65
TraesCS6B01G341800.2	Wheat	cytosol	27.76	56.64
TraesCS1B01G075300.1	Wheat	cytosol	41.52	56.62
TraesCS1D01G068700.1	Wheat	cytosol	30.47	56.49
TraesCS1B01G072400.1	Wheat	cytosol	48.16	56.4
TraesCS1A01G054700.2	Wheat	mitochondrion	56.14	56.28
TraesCS1D01G056200.1	Wheat	mitochondrion	57.0	56.24
TraesCS1B01G039100.1	Wheat	mitochondrion	54.05	56.19
TraesCS1D01G033000.1	Wheat	cytosol	27.89	56.19
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	54.67	56.19
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	53.81	56.15
TraesCS1A01G067600.1	Wheat	mitochondrion	56.02	56.09
TraesCS1D01G068900.1	Wheat	mitochondrion	56.02	56.09
TraesCS1B01G038500.1	Wheat	mitochondrion	54.42	56.08
TraesCS1D01G068400.1	Wheat	mitochondrion	56.63	56.01
TraesCS1A01G056000.1	Wheat	cytosol	27.64	55.97
TraesCS1A01G055800.1	Wheat	mitochondrion	52.95	55.9
TraesCS1A01G067800.1	Wheat	cytosol	25.68	55.88
TraesCS1A01G067400.1	Wheat	mitochondrion	56.63	55.88
TraesCS1B01G039200.1	Wheat	mitochondrion	53.81	55.87
TraesCS1D01G057700.1	Wheat	cytosol	22.24	55.69
TraesCS1D01G055300.1	Wheat	cytosol	42.26	55.66
HORVU1Hr1G013810.1	Barley	plastid	57.37	55.66
TraesCS1A01G073700.1	Wheat	cytosol	26.29	55.58
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.61	55.56
TraesCS1B01G092500.1	Wheat	mitochondrion	53.44	55.56
TraesCS6D01G290900.1	Wheat	mitochondrion	50.0	55.53
TraesCS1D01G068800.1	Wheat	plastid	55.65	55.51
TraesCS1D01G056600.1	Wheat	mitochondrion	13.76	55.45
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	45.82	55.42
TraesCS1B01G085400.1	Wheat	cytosol	43.49	55.23
TraesCS1D01G056700.1	Wheat	cytosol	41.15	55.19
TraesCS1D01G068500.1	Wheat	mitochondrion	55.04	55.17
TraesCS1A01G054800.1	Wheat	cytosol	39.43	55.15
TraesCS6A01G311600.1	Wheat	mitochondrion	56.63	55.14
TraesCS1B01G038300.1	Wheat	plastid	36.98	55.13
TraesCS1B01G038600.1	Wheat	cytosol	24.57	55.1
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	48.53	55.09
HORVU1Hr1G014040.1	Barley	mitochondrion	56.27	54.98
TraesCS1B01G038200.1	Wheat	mitochondrion	42.75	54.98
TraesCS1A01G055500.1	Wheat	mitochondrion	14.62	54.84
TraesCS1D01G057800.1	Wheat	mitochondrion	24.45	54.82
HORVU1Hr1G004750.6	Barley	plastid	53.69	54.76
TraesCS1B01G085300.1	Wheat	mitochondrion	53.19	54.67
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	44.59	54.67
TraesCS1A01G073800.1	Wheat	mitochondrion	22.36	54.65
TraesCS1A01G054500.1	Wheat	mitochondrion	52.33	54.62
HORVU6Hr1G076780.7	Barley	mitochondrion	55.28	54.61
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	55.53	54.46
TraesCS1B01G073100.1	Wheat	cytosol	40.54	54.46
HORVU1Hr1G010970.1	Barley	mitochondrion	55.16	54.36
HORVU0Hr1G035310.1	Barley	cytosol	38.82	54.3
TraesCS1A01G031700.1	Wheat	plastid	49.39	54.25
TraesCS1B01G315500.1	Wheat	mitochondrion	21.25	53.89
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	22.6	53.8
TraesCS1B01G073200.1	Wheat	cytosol	20.02	53.8
TraesCS1A01G067000.1	Wheat	mitochondrion	47.3	53.77
TraesCS1D01G076400.1	Wheat	cytosol	23.96	53.72
TraesCS1A01G067700.1	Wheat	extracellular	22.24	53.71
TraesCS1D01G067600.1	Wheat	cytosol	24.08	53.7
TraesCS1A01G073600.1	Wheat	mitochondrion	25.8	53.57
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.53	53.54
TraesCS1B01G084800.1	Wheat	cytosol	30.34	53.23
TraesCS1A01G057300.1	Wheat	cytosol	46.93	53.2
HORVU6Hr1G017870.2	Barley	mitochondrion	19.53	53.0
TraesCS1A01G066600.1	Wheat	mitochondrion	17.08	52.85
TraesCS1B01G086000.1	Wheat	plastid	44.47	52.77
TraesCS6B01G127200.1	Wheat	cytosol	22.24	52.62
TraesCS1D01G069100.1	Wheat	mitochondrion	41.28	52.26
TraesCS6D01G083300.1	Wheat	mitochondrion	28.62	52.24
HORVU1Hr1G011250.1	Barley	cytosol	18.92	52.2
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	14.62	52.19
HORVU0Hr1G031920.1	Barley	plastid	55.04	52.09
HORVU1Hr1G011400.44	Barley	plastid	39.19	51.79
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	30.59	51.45
TraesCS1B01G092600.1	Wheat	plastid	32.56	51.26
TraesCS1B01G071600.1	Wheat	mitochondrion	53.32	51.18
TraesCS1D01G068600.1	Wheat	plastid	21.38	51.18
TraesCS1B01G072900.2	Wheat	mitochondrion	54.79	51.09
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	31.57	50.89
TraesCS1D01G076900.1	Wheat	plastid	40.91	50.68
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.46	50.53
TraesCS6D01G083400.1	Wheat	mitochondrion	30.59	50.51
TraesCS6B01G127500.1	Wheat	cytosol	30.34	50.41
HORVU1Hr1G011160.2	Barley	cytosol, plastid	55.28	50.28
TraesCS1B01G072700.1	Wheat	cytosol	31.45	50.2
TraesCS1A01G074000.1	Wheat	mitochondrion	17.44	50.18
HORVU1Hr1G011150.1	Barley	cytosol, plastid	54.42	50.17
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.66	50.12
TraesCS1B01G072300.1	Wheat	plastid	34.89	50.0
TraesCS6D01G083100.1	Wheat	cytosol	30.1	50.0
HORVU1Hr1G014060.1	Barley	plastid	54.42	49.78
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	30.71	49.7
HORVU1Hr1G010890.5	Barley	cytosol	54.18	49.11
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	28.75	48.75
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	28.62	48.44
HORVU1Hr1G011300.3	Barley	plastid	54.42	48.15
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	44.96	47.78
Zm00001d018982_P001	Maize	mitochondrion	20.52	47.71
Zm00001d009733_P001	Maize	cytosol	44.35	45.41
Os04t0351333-00	Rice	cytosol	46.07	42.66
Os04t0349600-01	Rice	plastid	19.66	41.34
TraesCS6B01G129100.1	Wheat	cytosol, plastid	13.51	38.19
Zm00001d009735_P001	Maize	cytosol	44.23	37.0
Solyc06g007280.2.1	Tomato	cytosol	10.93	34.9
Bra027636.1-P	Field mustard	cytosol	12.78	32.1
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.3	31.24
KRH40513	Soybean	plastid	13.14	30.48
AT1G63330.2	Thale cress	cytosol	20.88	30.41
KRH39074	Soybean	cytosol	18.43	30.18
PGSC0003DMT400008759	Potato	cytosol	11.79	30.09
PGSC0003DMT400052977	Potato	cytosol	14.25	29.82
Solyc06g005220.2.1	Tomato	cytosol	14.86	29.8
KRH39004	Soybean	cytosol	18.18	29.78
KRH39057	Soybean	cytosol	18.18	29.78
VIT_14s0081g00110.t01	Wine grape	cytosol	17.94	29.74
Bra021192.1-P	Field mustard	plastid	18.3	29.56
Bra006187.1-P	Field mustard	plastid	10.57	29.55
KRH39072	Soybean	cytosol	17.94	29.44
KRH39112	Soybean	cytosol	17.94	29.38
KRH39054	Soybean	cytosol	17.81	29.18
Bra036649.1-P	Field mustard	cytosol	13.88	28.9
Bra026884.1-P	Field mustard	cytosol	16.09	28.54
Bra027029.1-P	Field mustard	mitochondrion	8.48	28.4
KRH09084	Soybean	plastid	17.81	28.38
AT1G62930.1	Thale cress	plastid	21.74	28.14
AT1G63130.1	Thale cress	mitochondrion	21.74	28.1
AT1G63080.3	Thale cress	mitochondrion	21.13	28.01
PGSC0003DMT400025067	Potato	cytosol	16.34	27.94
AT1G63400.1	Thale cress	cytosol, plastid	19.78	27.9
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.95	27.88
AT5G16640.1	Thale cress	mitochondrion	17.2	27.78
AT1G64580.1	Thale cress	mitochondrion	17.81	27.72
Bra026882.1-P	Field mustard	cytosol	18.18	27.72
PGSC0003DMT400008757	Potato	cytosol	16.95	27.71
Bra036651.1-P	Field mustard	mitochondrion	18.18	27.66
AT1G62670.1	Thale cress	mitochondrion	21.38	27.62
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.81	27.62
AT1G62590.1	Thale cress	mitochondrion	21.5	27.6
VIT_14s0081g00270.t01	Wine grape	plastid	19.53	27.41
Bra026971.1-P	Field mustard	mitochondrion	21.13	27.34
AT1G63070.1	Thale cress	mitochondrion	19.78	27.29
VIT_14s0081g00120.t01	Wine grape	plastid	19.53	27.27
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.97	27.25
Solyc06g007810.1.1	Tomato	cytosol	8.97	27.24
AT1G62910.1	Thale cress	mitochondrion	21.13	27.22
AT1G62914.1	Thale cress	mitochondrion	17.57	27.08
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.06	27.07
KRH41817	Soybean	mitochondrion	18.43	27.03
AT3G16710.1	Thale cress	mitochondrion	16.83	27.02
AT1G12300.1	Thale cress	mitochondrion	21.13	27.0
KRH17148	Soybean	mitochondrion	18.06	26.97
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.71	26.93
KRH31646	Soybean	cytosol	17.08	26.83
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.39	26.82
PGSC0003DMT400025074	Potato	cytosol	18.18	26.81
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.27	26.57
Bra028267.1-P	Field mustard	mitochondrion	20.39	26.52
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.88	26.4
KRH39066	Soybean	cytosol	17.94	26.31
KRH08636	Soybean	cytosol	16.83	26.25
AT1G62680.2	Thale cress	plastid	17.57	26.09
KRH09154	Soybean	mitochondrion	17.81	26.08
AT1G63150.1	Thale cress	mitochondrion	20.15	26.07
KRH48615	Soybean	mitochondrion	17.44	26.05
KRH09082	Soybean	cytosol	13.02	25.98
AT1G64583.1	Thale cress	mitochondrion	16.34	25.98
KRH08628	Soybean	plastid	17.57	25.91
KRH08639	Soybean	mitochondrion, plastid	17.94	25.84
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.27	25.82
AT1G62720.1	Thale cress	mitochondrion	15.36	25.77
Bra027726.1-P	Field mustard	mitochondrion	14.86	25.69
Solyc06g007300.1.1	Tomato	extracellular	18.67	25.68
KRH09121	Soybean	mitochondrion	16.83	25.66
PGSC0003DMT400053185	Potato	mitochondrion	18.55	25.59
Bra026958.1-P	Field mustard	mitochondrion	20.02	25.59
KRH08671	Soybean	cytosol, mitochondrion	17.32	25.5
PGSC0003DMT400056665	Potato	mitochondrion	18.43	25.47
Solyc06g007740.1.1	Tomato	cytosol	18.43	25.42
AT1G06580.1	Thale cress	mitochondrion	15.6	25.4
KRH08277	Soybean	plastid	17.69	25.4
KRH25652	Soybean	cytosol, golgi	16.83	25.37
VIT_14s0030g02280.t01	Wine grape	plastid	17.44	25.31
CDX68679	Canola	cytosol	3.56	25.22
Bra031731.1-P	Field mustard	mitochondrion	15.72	25.2
PGSC0003DMT400056663	Potato	plastid	18.18	25.17
Bra016762.1-P	Field mustard	mitochondrion	18.67	25.04
KRH39050	Soybean	mitochondrion	16.34	25.0
AT5G41170.1	Thale cress	mitochondrion	16.09	24.86
Bra027026.1-P	Field mustard	mitochondrion	15.97	24.86
KRH08625	Soybean	plastid	17.57	24.83
KRH08607	Soybean	cytosol	17.08	24.78
AT1G12700.2	Thale cress	cytosol	18.8	24.76
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.86	24.64
KRH40400	Soybean	plastid	17.44	24.61
VIT_14s0030g02260.t01	Wine grape	cytosol	13.14	24.15
PGSC0003DMT400052971	Potato	mitochondrion	17.57	24.11
Bra026957.1-P	Field mustard	mitochondrion	17.81	24.05
Solyc04g080120.1.1	Tomato	extracellular	17.94	23.86
Bra026954.1-P	Field mustard	mitochondrion	19.04	23.85
PGSC0003DMT400015293	Potato	mitochondrion	17.81	23.77
PGSC0003DMT400015298	Potato	mitochondrion	17.81	23.77
KRH09097	Soybean	plastid	16.95	23.67
KRH09095	Soybean	plastid	16.95	23.59
PGSC0003DMT400008760	Potato	mitochondrion	16.83	23.38
PGSC0003DMT400053556	Potato	mitochondrion	13.14	23.31
PGSC0003DMT400053182	Potato	cytosol	17.08	23.21
AT4G26800.2	Thale cress	mitochondrion, plastid	14.62	23.15
Bra026401.1-P	Field mustard	plastid	15.11	22.99
KRH08599	Soybean	cytosol, plastid	18.18	22.12
AT1G64100.2	Thale cress	cytosol	21.25	21.46
KRH09085	Soybean	mitochondrion	18.55	21.45
Bra027656.1-P	Field mustard	cytosol	23.1	19.98
KRH12873	Soybean	cytosol	15.48	18.1
KRH39064	Soybean	cytosol	19.04	16.0
Bra016758.1-P	Field mustard	plastid	18.92	13.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C9W4C2	EMBL:FJ184379	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM27077.1	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001B7CD02	EnsemblPlantsGene:Zm00001d007548	EnsemblPlants:Zm00001d007548_P001	EnsemblPlants:Zm00001d007548_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr2:-:234534330..234536774

Molecular Weight (calculated)

90612.9 Da

IEP (calculated)

7.924

GRAVY (calculated)

0.048

Length

814 amino acids

Sequence
(BLAST)

001: MPSCARISSA VSTAAASSSS PPPHPPRCRR LAAATARVRE GTLRPEEAHD LLDELQRRGT PVLERDLNGF LAALARAPSS AACRSGPALA VALFNRAASR
101: AQGPRVLSPT SHTYAILMDC CTRAHRPELA LAFFGQLLRT GLRVNIIIAN HLLEGFCEAK RTDEALDILL HRTPELGCVP DVFSYSILLK SLCDQGKSGQ
201: ADDLLRMMAE GGAVCSPNVV AYNTVIDGFF KEGDVNKACD LFKEMVQRGI PPDLVTYNSV VHALCKARAM DKAEAFLRQM VNKRVLPNNW TYNNLIYGYS
301: STGQWKEAVR VFKEMRRHSI LPDVVTLSML MGSLCKYGKI KEARDVFDTM AMKGQNPDVF SYNIMLNGYA TKGCLVDMTD LFDLMLGDGI APDFYTFNVL
401: IKAYANCGML DKAMIIFNEM RDHGVKPDVV TYRTVIAALC RIGKMDDAME KFNQMIDQGV APDKYAYNCL IQGFCTHGSL LKAKELISEI MNNGMHLDIV
501: FFSSIINNLC KLGRVMDAQN IFDLTVNVGL HPDAVVYSML MDGYCLVGKM EKALRVFDAM VSAGIEPNVV VYCTLVNGYC KIGRIDEGLS LFREMLQRGI
601: KPSTILYSII IDGLFQAGRT VPAKVKFHEM TESGIAMDIC TYNIVLRGLF KNRCFDEAIF LFKELRAMNV KINIITLNTM IDGMFQTRRV EEAKDLFASI
701: SRSRLVPSVV TYSIMITNLI KEGLVEEAED MFSSMQNAGC EPNSRLLNHV VRELLKKNEI VRAGAYLSKI DERNFSLEHL TTMLLVDLFS SKGTCREHIR
801: FLPAKYHFLA EASP

Best Arabidopsis Sequence Match ( AT1G62930.1 )
(BLAST)

001: MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI
101: SLGERMQNLR ISYDLYSYNI LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME YQPNTVTFNT LIHGLFLHNK
201: ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
301: CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT
401: LIKGFCKAKR VEEGMELFRE MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK LEKALVVFEY LQKSKMEPDI
501: YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
601: FVGDASTISM VINMLHDGRL EKSYLEMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62930, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.