Factsheet for HORVU1Hr1G011020.4

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011250.1	Barley	cytosol	42.1	91.19
HORVU0Hr1G035310.1	Barley	cytosol	82.94	91.07
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.78	89.9
HORVU1Hr1G010970.1	Barley	mitochondrion	96.87	74.94
HORVU0Hr1G031920.1	Barley	plastid	90.61	67.33
HORVU1Hr1G011160.2	Barley	cytosol, plastid	93.58	66.82
HORVU1Hr1G011150.1	Barley	cytosol, plastid	89.98	65.12
HORVU1Hr1G010890.5	Barley	cytosol	88.73	63.14
HORVU1Hr1G011300.3	Barley	plastid	90.3	62.72
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	70.27	54.1
HORVU1Hr1G014040.1	Barley	mitochondrion	70.11	53.78
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	58.22	53.22
HORVU6Hr1G076780.7	Barley	mitochondrion	68.08	52.79
HORVU1Hr1G013810.1	Barley	plastid	69.01	52.56
KXG35774	Sorghum	cytosol, mitochondrion	37.25	50.32
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	36.15	48.12
HORVU1Hr1G014060.1	Barley	plastid	66.98	48.09
HORVU1Hr1G018190.2	Barley	cytosol	21.28	47.72
HORVU1Hr1G004750.6	Barley	plastid	58.22	46.62
HORVU6Hr1G017870.2	Barley	mitochondrion	21.75	46.33
HORVU1Hr1G011400.44	Barley	plastid	42.57	44.16
Zm00001d007548_P001	Maize	plastid	55.56	43.61
Zm00001d007559_P001	Maize	plastid	55.56	43.45
Zm00001d007555_P001	Maize	plastid	55.09	43.24
Zm00001d007531_P001	Maize	plastid	54.93	43.12
Zm00001d007534_P001	Maize	plastid	52.11	42.86
KXG28799	Sorghum	plastid	50.7	42.63
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.92	41.64
Os04t0351333-00	Rice	cytosol	52.9	38.45
HORVU6Hr1G014310.1	Barley	mitochondrion	38.34	35.66
HORVU6Hr1G002890.6	Barley	cytosol, plastid	42.88	34.47
Solyc06g007280.2.1	Tomato	cytosol	12.36	30.98
PGSC0003DMT400052977	Potato	cytosol	18.15	29.82
Bra026884.1-P	Field mustard	cytosol	21.13	29.41
Solyc06g005220.2.1	Tomato	cytosol	18.62	29.31
KRH09082	Soybean	cytosol	18.15	28.43
Bra027029.1-P	Field mustard	mitochondrion	10.8	28.4
Bra027636.1-P	Field mustard	cytosol	14.24	28.09
KRH39054	Soybean	cytosol	21.75	27.97
CDX68679	Canola	cytosol	5.01	27.83
VIT_14s0081g00110.t01	Wine grape	cytosol	21.28	27.7
KRH39004	Soybean	cytosol	21.28	27.36
KRH39057	Soybean	cytosol	21.13	27.16
KRH39112	Soybean	cytosol	21.13	27.16
KRH39074	Soybean	cytosol	20.81	26.76
PGSC0003DMT400008759	Potato	cytosol	13.3	26.65
KRH39072	Soybean	cytosol	20.66	26.61
Solyc06g007810.1.1	Tomato	cytosol	11.11	26.49
Bra006187.1-P	Field mustard	plastid	11.89	26.12
Os04t0349600-01	Rice	plastid	15.81	26.1
KRH09084	Soybean	plastid	20.34	25.44
KRH39066	Soybean	cytosol	21.75	25.05
PGSC0003DMT400025067	Potato	cytosol	18.62	25.0
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.62	24.95
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.94	24.44
AT1G63330.2	Thale cress	cytosol	21.28	24.33
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.09	24.16
KRH08636	Soybean	cytosol	19.72	24.14
KRH09121	Soybean	mitochondrion	20.03	23.97
KRH08607	Soybean	cytosol	20.66	23.53
KRH09154	Soybean	mitochondrion	20.34	23.38
KRH17148	Soybean	mitochondrion	19.87	23.3
KRH48615	Soybean	mitochondrion	19.87	23.3
Bra031731.1-P	Field mustard	mitochondrion	18.47	23.23
VIT_14s0081g00120.t01	Wine grape	plastid	21.13	23.16
KRH41817	Soybean	mitochondrion	20.03	23.06
VIT_14s0030g02260.t01	Wine grape	cytosol	15.96	23.02
Bra036649.1-P	Field mustard	cytosol	14.08	23.02
KRH08639	Soybean	mitochondrion, plastid	20.34	23.01
KRH25652	Soybean	cytosol, golgi	19.41	22.96
PGSC0003DMT400025074	Potato	cytosol	19.72	22.83
KRH40513	Soybean	plastid	12.52	22.79
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.91	22.62
PGSC0003DMT400008757	Potato	cytosol	17.53	22.49
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.09	22.47
KRH08628	Soybean	plastid	19.25	22.28
VIT_14s0081g00270.t01	Wine grape	plastid	20.19	22.24
AT5G16640.1	Thale cress	mitochondrion	17.53	22.22
Bra026882.1-P	Field mustard	cytosol	18.31	21.91
KRH08671	Soybean	cytosol, mitochondrion	18.94	21.88
KRH08277	Soybean	plastid	19.41	21.87
Bra026954.1-P	Field mustard	mitochondrion	22.22	21.85
AT1G63080.3	Thale cress	mitochondrion	20.97	21.82
AT1G63070.1	Thale cress	mitochondrion	20.03	21.69
Solyc06g007740.1.1	Tomato	cytosol	20.03	21.69
AT1G12300.1	Thale cress	mitochondrion	21.6	21.66
KRH40400	Soybean	plastid	19.56	21.66
Solyc06g007300.1.1	Tomato	extracellular	20.03	21.62
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.68	21.52
AT1G62590.1	Thale cress	mitochondrion	21.28	21.45
AT1G62670.1	Thale cress	mitochondrion	21.13	21.43
Bra016762.1-P	Field mustard	mitochondrion	20.34	21.42
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.96	21.38
AT1G62910.1	Thale cress	mitochondrion	21.13	21.36
KRH08625	Soybean	plastid	19.25	21.35
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.28	21.28
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.66	21.26
KRH31646	Soybean	cytosol	17.21	21.24
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.28	21.18
PGSC0003DMT400008760	Potato	mitochondrion	19.41	21.16
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.28	21.12
AT1G63130.1	Thale cress	mitochondrion	20.81	21.11
KRH09097	Soybean	plastid	19.25	21.1
PGSC0003DMT400052971	Potato	mitochondrion	19.56	21.08
KRH39050	Soybean	mitochondrion	17.53	21.05
AT1G12700.2	Thale cress	cytosol	20.34	21.04
PGSC0003DMT400053185	Potato	mitochondrion	19.41	21.02
AT1G62930.1	Thale cress	plastid	20.66	20.99
AT3G16710.1	Thale cress	mitochondrion	16.59	20.91
Bra026957.1-P	Field mustard	mitochondrion	19.72	20.9
PGSC0003DMT400056665	Potato	mitochondrion	19.25	20.88
Bra026958.1-P	Field mustard	mitochondrion	20.81	20.88
KRH09095	Soybean	plastid	19.09	20.85
Bra036651.1-P	Field mustard	mitochondrion	17.21	20.56
AT1G62680.2	Thale cress	plastid	17.53	20.44
Bra021192.1-P	Field mustard	plastid	16.12	20.44
VIT_14s0030g02280.t01	Wine grape	plastid	17.84	20.32
Bra028267.1-P	Field mustard	mitochondrion	19.87	20.29
PGSC0003DMT400056663	Potato	plastid	18.62	20.24
AT1G63150.1	Thale cress	mitochondrion	19.87	20.19
Bra026971.1-P	Field mustard	mitochondrion	19.87	20.19
Bra027026.1-P	Field mustard	mitochondrion	16.43	20.08
PGSC0003DMT400053182	Potato	cytosol	18.78	20.03
Solyc04g080120.1.1	Tomato	extracellular	18.94	19.77
PGSC0003DMT400015293	Potato	mitochondrion	18.62	19.51
PGSC0003DMT400015298	Potato	mitochondrion	18.62	19.51
AT1G62720.1	Thale cress	mitochondrion	14.71	19.38
AT5G41170.1	Thale cress	mitochondrion	15.96	19.35
AT1G63400.1	Thale cress	cytosol, plastid	17.37	19.24
KRH08599	Soybean	cytosol, plastid	19.56	18.68
AT1G62914.1	Thale cress	mitochondrion	15.34	18.56
AT1G64580.1	Thale cress	mitochondrion	15.18	18.55
AT1G64583.1	Thale cress	mitochondrion	14.71	18.36
Bra026401.1-P	Field mustard	plastid	15.34	18.32
AT1G64100.2	Thale cress	cytosol	22.69	17.99
KRH09085	Soybean	mitochondrion	19.56	17.76
PGSC0003DMT400053556	Potato	mitochondrion	12.68	17.65
AT1G06580.1	Thale cress	mitochondrion	13.62	17.4
AT4G26800.2	Thale cress	mitochondrion, plastid	13.62	16.93
KRH12873	Soybean	cytosol	18.31	16.81
Bra027656.1-P	Field mustard	cytosol	23.16	15.73
Bra027726.1-P	Field mustard	mitochondrion	11.58	15.71
KRH39064	Soybean	cytosol	21.91	14.45
Bra016758.1-P	Field mustard	plastid	20.97	11.56

Protein Annotations

EnsemblPlants:HORVU1Hr1G011020.4	EnsemblPlantsGene:HORVU1Hr1G011020	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:26210855..26213657

Molecular Weight (calculated)

70299.2 Da

IEP (calculated)

8.037

GRAVY (calculated)

0.055

Length

639 amino acids

Sequence
(BLAST)

001: XGCVPNVFSY SIVLKALCDN SMRQRALDLF QMMAKQGGGC SPDVVAYNTV IHGFFNEGET GKACSLFHEM TRQGVKPDVV TYNLIIDALC KARAMDKAEL
101: VLRQMTTDGA QPDTVTYSCM IHGYATLGRL KEAAKMFRKM KSRGLIPNIV TCNSLMASLC KHGRSKEAAE FFDSMTAKGH KPDTVSYCIL LHGHGTEGCF
201: ADMIGLFNSM KNNGIAADCR VFTILIDAYA KRGMVDDVML IFTEMQQQGV SPNVVTYSTV IAVLSRMGRL TDAMEKFNQM VARGIQPNTA VYNSIIQSFC
301: MHGGLVKAKE LVSEMINKGI PRPDIVFFNS VINSLCKDGR VMDAHDIFDL VIDIGERPDV ITFTSLIDGY CLVGKMDKAF GMLDAMELVG VEPNIVTYST
401: LVNGYCKNRR IDDGLTLFRE MLCKGVKPDT ITYNIILDGL FRSGRTVAAR KKFHEMIESG TTVTISTYGI ILGGLCRNNC ADEAIVLFQK LGAMNVKFSI
501: TILNTMINAM YKVQRKEEAK ELFAAISDSG LLPNESTYGV MIKNLLKDGA VEDANNMFSS MEKSGIVPSS RLINGIIRLL LDNGEIAKAG NYLSKVDGKR
601: ILLEASTTSL MLSLFSRKGK YHEDMTLLPA KYQFFDGCS

Best Arabidopsis Sequence Match ( AT1G62930.1 )
(BLAST)

001: MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI
101: SLGERMQNLR ISYDLYSYNI LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME YQPNTVTFNT LIHGLFLHNK
201: ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
301: CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT
401: LIKGFCKAKR VEEGMELFRE MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK LEKALVVFEY LQKSKMEPDI
501: YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
601: FVGDASTISM VINMLHDGRL EKSYLEMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62930, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.