Factsheet for HORVU1Hr1G011150.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011250.1	Barley	cytosol	31.48	94.24
HORVU1Hr1G011160.2	Barley	cytosol, plastid	92.98	91.73
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	49.49	91.04
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.46	90.57
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.12	89.98
HORVU0Hr1G035310.1	Barley	cytosol	58.89	89.35
HORVU0Hr1G031920.1	Barley	plastid	86.52	88.84
HORVU1Hr1G010890.5	Barley	cytosol	89.58	88.08
HORVU1Hr1G011300.3	Barley	plastid	89.47	85.87
HORVU1Hr1G010970.1	Barley	mitochondrion	79.5	84.99
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	64.55	68.67
HORVU1Hr1G014040.1	Barley	mitochondrion	63.99	67.83
HORVU1Hr1G013810.1	Barley	plastid	63.19	66.51
HORVU6Hr1G076780.7	Barley	mitochondrion	62.06	66.5
HORVU1Hr1G011400.44	Barley	plastid	45.64	65.42
HORVU1Hr1G014060.1	Barley	plastid	62.74	62.25
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	47.57	60.09
HORVU1Hr1G004750.6	Barley	plastid	52.89	58.52
KXG28799	Sorghum	plastid	47.45	55.13
HORVU6Hr1G017870.2	Barley	mitochondrion	18.69	55.0
Zm00001d007534_P001	Maize	plastid	47.9	54.44
Zm00001d007548_P001	Maize	plastid	50.17	54.42
Zm00001d007531_P001	Maize	plastid	50.06	54.3
Zm00001d007559_P001	Maize	plastid	50.17	54.22
Zm00001d007555_P001	Maize	plastid	49.83	54.05
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	44.28	51.04
KXG35774	Sorghum	cytosol, mitochondrion	26.39	49.26
HORVU1Hr1G018190.2	Barley	cytosol	15.63	48.42
Os04t0351333-00	Rice	cytosol	43.83	44.03
Os04t0349600-01	Rice	plastid	18.91	43.15
HORVU6Hr1G014310.1	Barley	mitochondrion	32.96	42.36
HORVU6Hr1G002890.6	Barley	cytosol, plastid	36.81	40.88
Solyc06g007280.2.1	Tomato	cytosol	9.63	33.33
KRH39054	Soybean	cytosol	18.12	32.19
KRH39057	Soybean	cytosol	17.78	31.59
KRH39112	Soybean	cytosol	17.78	31.59
KRH39004	Soybean	cytosol	17.67	31.39
KRH39074	Soybean	cytosol	17.67	31.39
PGSC0003DMT400052977	Potato	cytosol	13.59	30.85
KRH08636	Soybean	cytosol	18.01	30.46
KRH39072	Soybean	cytosol	17.1	30.44
KRH39066	Soybean	cytosol	19.03	30.27
KRH09084	Soybean	plastid	17.33	29.94
AT1G63330.2	Thale cress	cytosol	18.91	29.87
Bra026884.1-P	Field mustard	cytosol	15.4	29.63
VIT_14s0081g00110.t01	Wine grape	cytosol	16.42	29.53
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.86	29.35
Solyc06g005220.2.1	Tomato	cytosol	13.48	29.31
Bra027029.1-P	Field mustard	mitochondrion	8.04	29.22
KRH08639	Soybean	mitochondrion, plastid	18.46	28.85
VIT_14s0081g00120.t01	Wine grape	plastid	19.03	28.82
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.42	28.71
KRH17148	Soybean	mitochondrion	17.67	28.62
KRH48615	Soybean	mitochondrion	17.67	28.62
KRH08671	Soybean	cytosol, mitochondrion	17.89	28.57
KRH08607	Soybean	cytosol	18.12	28.52
KRH08628	Soybean	plastid	17.78	28.44
Solyc06g007810.1.1	Tomato	cytosol	8.61	28.36
KRH09154	Soybean	mitochondrion	17.78	28.24
KRH40513	Soybean	plastid	11.21	28.21
AT5G16640.1	Thale cress	mitochondrion	16.08	28.17
AT1G63070.1	Thale cress	mitochondrion	18.8	28.14
Bra027636.1-P	Field mustard	cytosol	10.31	28.09
KRH08277	Soybean	plastid	17.89	27.87
Bra006187.1-P	Field mustard	plastid	9.17	27.84
CDX68679	Canola	cytosol	3.62	27.83
Bra026882.1-P	Field mustard	cytosol	16.76	27.72
KRH09121	Soybean	mitochondrion	16.76	27.72
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.37	27.63
Bra036649.1-P	Field mustard	cytosol	12.23	27.62
AT1G62670.1	Thale cress	mitochondrion	19.71	27.62
VIT_14s0081g00270.t01	Wine grape	plastid	18.12	27.59
KRH41817	Soybean	mitochondrion	17.33	27.57
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.37	27.54
Bra027026.1-P	Field mustard	mitochondrion	16.31	27.53
AT1G63080.3	Thale cress	mitochondrion	19.14	27.52
Bra036651.1-P	Field mustard	mitochondrion	16.65	27.48
AT1G63130.1	Thale cress	mitochondrion	19.59	27.46
AT1G12300.1	Thale cress	mitochondrion	19.71	27.32
Bra026958.1-P	Field mustard	mitochondrion	19.71	27.32
KRH08625	Soybean	plastid	17.78	27.26
Bra026954.1-P	Field mustard	mitochondrion	20.05	27.23
KRH40400	Soybean	plastid	17.78	27.21
KRH09082	Soybean	cytosol	12.57	27.21
Solyc06g007300.1.1	Tomato	extracellular	18.23	27.2
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.82	27.17
Solyc06g007740.1.1	Tomato	cytosol	18.12	27.12
AT1G62590.1	Thale cress	mitochondrion	19.37	26.97
PGSC0003DMT400008759	Potato	cytosol	9.74	26.96
AT1G62680.2	Thale cress	plastid	16.65	26.82
AT1G62930.1	Thale cress	plastid	19.03	26.71
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.86	26.67
PGSC0003DMT400025074	Potato	cytosol	16.65	26.63
AT1G62910.1	Thale cress	mitochondrion	19.03	26.58
Bra026971.1-P	Field mustard	mitochondrion	18.91	26.55
AT1G12700.2	Thale cress	cytosol	18.57	26.54
Bra016762.1-P	Field mustard	mitochondrion	18.23	26.52
KRH39050	Soybean	mitochondrion	15.97	26.5
PGSC0003DMT400053185	Potato	mitochondrion	17.67	26.44
AT1G63150.1	Thale cress	mitochondrion	18.8	26.39
PGSC0003DMT400008757	Potato	cytosol	14.84	26.31
KRH25652	Soybean	cytosol, golgi	16.08	26.3
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.16	26.21
Bra031731.1-P	Field mustard	mitochondrion	15.06	26.18
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.08	26.15
Bra028267.1-P	Field mustard	mitochondrion	18.46	26.04
AT1G63400.1	Thale cress	cytosol, plastid	16.99	26.0
Bra021192.1-P	Field mustard	plastid	14.84	25.99
KRH31646	Soybean	cytosol	15.18	25.87
AT3G16710.1	Thale cress	mitochondrion	14.84	25.84
PGSC0003DMT400052971	Potato	mitochondrion	17.33	25.8
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.27	25.66
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.38	25.66
PGSC0003DMT400056665	Potato	mitochondrion	17.1	25.64
AT1G64580.1	Thale cress	mitochondrion	15.18	25.62
AT1G62914.1	Thale cress	mitochondrion	15.29	25.57
PGSC0003DMT400056663	Potato	plastid	16.99	25.51
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.46	25.51
VIT_14s0030g02280.t01	Wine grape	plastid	16.19	25.49
PGSC0003DMT400025067	Potato	cytosol	13.59	25.21
PGSC0003DMT400053182	Potato	cytosol	17.1	25.21
AT1G62720.1	Thale cress	mitochondrion	13.82	25.15
PGSC0003DMT400008760	Potato	mitochondrion	16.53	24.91
Bra026957.1-P	Field mustard	mitochondrion	16.99	24.88
KRH09097	Soybean	plastid	16.42	24.87
AT5G41170.1	Thale cress	mitochondrion	14.84	24.86
KRH09095	Soybean	plastid	16.42	24.79
AT1G64583.1	Thale cress	mitochondrion	14.16	24.41
Solyc04g080120.1.1	Tomato	extracellular	16.65	24.02
Bra026401.1-P	Field mustard	plastid	14.5	23.93
AT1G06580.1	Thale cress	mitochondrion	13.48	23.8
PGSC0003DMT400015293	Potato	mitochondrion	16.42	23.77
PGSC0003DMT400015298	Potato	mitochondrion	16.42	23.77
PGSC0003DMT400053556	Potato	mitochondrion	12.12	23.31
KRH08599	Soybean	cytosol, plastid	17.44	23.02
AT4G26800.2	Thale cress	mitochondrion, plastid	13.36	22.96
Bra027726.1-P	Field mustard	mitochondrion	12.23	22.93
VIT_14s0030g02260.t01	Wine grape	cytosol	11.44	22.8
AT1G64100.2	Thale cress	cytosol	20.39	22.33
KRH09085	Soybean	mitochondrion	16.99	21.31
KRH12873	Soybean	cytosol	14.84	18.82
Bra027656.1-P	Field mustard	cytosol	19.59	18.38
KRH39064	Soybean	cytosol	19.25	17.54
Bra016758.1-P	Field mustard	plastid	18.69	14.24

Protein Annotations

EnsemblPlants:HORVU1Hr1G011150.1	EnsemblPlantsGene:HORVU1Hr1G011150	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000B4682BC	UniProt:A0A287EMA2	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr1H:+:26485431..26488505

Molecular Weight (calculated)

97600.5 Da

IEP (calculated)

8.882

GRAVY (calculated)

0.028

Length

883 amino acids

Sequence
(BLAST)

001: RLTICDSKIQ IESSLHRVRT RRPLPPTMSR IRLCRRSSCF LCPSSFTSPI QRPCFRRSSY IQPKSGLRLR HCSTTSMSRV RLTTLPFLVS PSWSPRDAFA
101: AATKLGRAGT LSRDDAHHMF DELFRQATPV PGRSLNGFLT ALARATSSSA CITDGPALAL ALFNRVCREQ AGPRVVPLTV HTYSILMDCC CRARRPDLGL
201: ALFGCILRTG LKIHQITANT LLKCLCYADR MEEAVNVLLH RMSELGCVPD AFSYSIVLKA LCDNSMSQRA LELFQMMAKQ GGGCSPDVVA YNTVIHGFFN
301: EGETGKACSL FHEMKRQGVV PSVATYNSII DALCKARAMD KAELILRHMT TNGAQPDTVT YTCMIRGYAT LGRLKEAAKM FRKMKSRGLI PNIVICNSFL
401: ASLCKHGRSK EAAEFFDSMT AKGHKPDIVS YCTLLHGYAS EGCFADMIGL FNSMKSNGIA ADCRVFNILI HAYAKRGMVD DAMLIFTEMQ QQGVSPNVVT
501: YSTVISAFSR MGRLTDAMEK FNQMVARGIQ PNTAVYRSII QGFCMHGGLV KAKELVSEMI NKGIPRPDIV FFNSVINSLC KDGRVMDAHD IFDLVTDIGE
601: RPDVITFTSL IDGYCLVGKM DKAFKILDAM EVVGVEPDIV TYNTLVSGYC SNRRIDNGLT LFREMLCKGV KPDTITYNII LDGLFRSGQT VAARKMFHEM
701: IESGTTVTIS TYGIILGGLC RNNCADEAIV LFQKLGAMNV KFSITILNTM IDAMYKVQRK EEAKELFAAI SDSGLVPNES TYAVMIRNLL KDGAVEDAEN
801: MFSSMDNSAI VPSSRLINDI IRMLLERGEI AKAGNYLSKV DGKGISLEAS TTSLMLSLFS RKGKHQEDIK LLPAKYQFFN GFG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.